Wall clock time and date at job start Tue Mar 31 2020 13:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.46681 * 2 1 4 4 C 1.46500 * 119.99692 * 269.99902 * 3 2 1 5 5 C 1.50710 * 109.47046 * 270.00163 * 4 3 2 6 6 H 1.08004 * 119.99712 * 359.97438 * 5 4 3 7 7 C 1.37874 * 119.99742 * 180.02562 * 5 4 3 8 8 N 1.31509 * 120.00433 * 0.02562 * 7 5 4 9 9 Si 1.86808 * 119.99733 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46926 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.46979 * 119.99840 * 9 7 5 12 12 H 1.48504 * 109.46844 * 240.00224 * 9 7 5 13 13 C 1.34776 * 120.00350 * 90.00152 * 3 2 1 14 14 O 1.21576 * 120.00221 * 179.97438 * 13 3 2 15 15 N 1.34780 * 119.99701 * 359.97438 * 13 3 2 16 16 C 1.39003 * 120.00063 * 179.97438 * 15 13 3 17 17 N 1.29392 * 124.99386 * 179.97438 * 16 15 13 18 18 C 1.33040 * 117.46180 * 180.20632 * 17 16 15 19 19 C 1.33065 * 113.27002 * 359.25972 * 18 17 16 20 20 S 1.71011 * 124.98821 * 359.96553 * 16 15 13 21 21 C 1.52155 * 124.89237 * 180.84099 * 19 18 17 22 22 C 1.53380 * 107.39195 * 293.46710 * 21 19 18 23 23 C 1.51026 * 110.97030 * 80.22297 * 22 21 19 24 24 C 1.50939 * 116.04735 * 288.08526 * 23 22 21 25 25 C 1.52884 * 123.37718 * 179.01055 * 18 17 16 26 26 H 1.08995 * 109.47413 * 299.99682 * 1 2 3 27 27 H 1.09000 * 109.47533 * 60.00506 * 1 2 3 28 28 H 1.09005 * 109.46824 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47049 * 239.99675 * 2 1 3 30 30 H 1.09000 * 109.46726 * 119.99940 * 2 1 3 31 31 H 1.08992 * 109.47634 * 30.00070 * 4 3 2 32 32 H 1.08997 * 109.47075 * 150.00734 * 4 3 2 33 33 H 0.96998 * 120.00217 * 179.97438 * 8 7 5 34 34 H 0.96999 * 120.00111 * 0.02562 * 15 13 3 35 35 H 1.09002 * 109.87423 * 173.99341 * 21 19 18 36 36 H 1.09001 * 109.93305 * 52.97773 * 21 19 18 37 37 H 1.08997 * 109.18015 * 319.84220 * 22 21 19 38 38 H 1.09001 * 109.14034 * 200.58062 * 22 21 19 39 39 H 1.09000 * 108.16574 * 49.79419 * 23 22 21 40 40 H 1.09004 * 108.16267 * 166.37700 * 23 22 21 41 41 H 1.09000 * 109.06718 * 193.05205 * 24 23 22 42 42 H 1.08997 * 109.06792 * 311.99830 * 24 23 22 43 43 H 1.08999 * 109.86132 * 4.68829 * 25 18 17 44 44 H 1.08995 * 109.85544 * 125.70793 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2623 2.0718 -1.2688 5 6 3.6857 1.8350 -1.7038 6 1 4.3428 1.2309 -1.0957 7 6 4.1492 2.3905 -2.8775 8 7 3.3495 3.1273 -3.6172 9 14 5.9138 2.0976 -3.4164 10 1 6.6014 1.2425 -2.4158 11 1 5.9217 1.4190 -4.7372 12 1 6.6209 3.3990 -3.5241 13 6 2.2429 2.0167 1.1672 14 8 2.6485 3.1628 1.1671 15 7 2.0178 1.3815 2.3344 16 6 2.2500 2.0366 3.5382 17 7 2.0669 1.5212 4.7108 18 6 2.3337 2.2865 5.7658 19 6 2.7763 3.4978 5.4381 20 16 2.8198 3.6421 3.6869 21 6 3.1769 4.5768 6.4333 22 6 1.9078 5.0056 7.1803 23 6 1.5691 4.0247 8.2777 24 6 1.0403 2.6843 7.8285 25 6 2.1449 1.8229 7.2105 26 1 -0.3634 0.5137 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.5816 1.6877 -2.0284 32 1 2.0954 3.1410 -1.1385 33 1 3.6758 3.5183 -4.4427 34 1 1.6946 0.4669 2.3344 35 1 3.6015 5.4299 5.9040 36 1 3.9059 4.1790 7.1393 37 1 1.0774 5.0556 6.4760 38 1 2.0663 5.9914 7.6176 39 1 2.4678 3.8542 8.8704 40 1 0.8231 4.4845 8.9260 41 1 0.6197 2.1614 8.6875 42 1 0.2550 2.8409 7.0890 43 1 1.8494 0.7739 7.2272 44 1 3.0731 1.9559 7.7662 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000138368654.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:30 Heat of formation + Delta-G solvation = 5.735799 kcal Electronic energy + Delta-G solvation = -25182.153476 eV Core-core repulsion = 21646.927476 eV Total energy + Delta-G solvation = -3535.226000 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.34401 -39.62634 -36.93032 -35.68159 -34.37371 -32.75029 -32.25031 -30.32667 -30.19331 -27.29880 -25.20442 -24.96193 -23.26982 -23.17678 -22.22223 -20.60347 -20.18686 -18.92978 -17.72285 -16.98740 -16.69782 -16.50351 -15.53843 -15.24814 -15.03691 -14.62498 -14.29616 -14.13532 -13.98761 -13.81513 -13.53503 -13.27286 -12.94894 -12.76384 -12.43752 -12.17583 -12.14243 -11.85292 -11.39740 -11.32030 -11.13386 -11.02308 -10.90061 -10.82709 -10.79978 -10.69413 -10.61523 -10.22170 -10.14058 -9.73115 -9.42821 -9.36591 -8.75877 -8.50091 -8.08721 -7.63305 -6.11107 -4.16194 1.14549 1.49997 2.22031 2.75641 2.92201 3.26628 3.34693 3.38898 3.66145 4.13889 4.40977 4.53201 4.61244 4.68089 4.86666 5.05428 5.14803 5.20550 5.23675 5.32203 5.44931 5.45793 5.54565 5.57187 5.59873 5.68133 5.87700 5.88414 5.95082 5.98897 6.02175 6.06870 6.09338 6.21924 6.26791 6.36122 6.50124 6.63079 7.16183 7.29871 7.43586 7.84942 8.01339 8.13175 8.31520 8.77724 8.93340 9.49289 10.96904 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.019486 B = 0.003183 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.580561 B = 8793.701790 C = 9611.478473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.103 3.897 3 N -0.594 5.594 4 C 0.259 3.741 5 C -0.530 4.530 6 H 0.059 0.941 7 C 0.063 3.937 8 N -0.893 5.893 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.696 3.304 14 O -0.551 6.551 15 N -0.644 5.644 16 C 0.278 3.722 17 N -0.534 5.534 18 C 0.088 3.912 19 C -0.302 4.302 20 S 0.250 5.750 21 C -0.029 4.029 22 C -0.113 4.113 23 C -0.116 4.116 24 C -0.112 4.112 25 C -0.035 4.035 26 H 0.050 0.950 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.092 0.908 30 H 0.060 0.940 31 H 0.039 0.961 32 H 0.047 0.953 33 H 0.264 0.736 34 H 0.413 0.587 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.058 0.942 40 H 0.056 0.944 41 H 0.066 0.934 42 H 0.062 0.938 43 H 0.078 0.922 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.307 -2.206 20.251 21.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.021 4.021 3 N -0.328 5.328 4 C 0.141 3.859 5 C -0.569 4.569 6 H 0.077 0.923 7 C -0.139 4.139 8 N -0.532 5.532 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.208 1.208 13 C 0.396 3.604 14 O -0.428 6.428 15 N -0.298 5.298 16 C -0.092 4.092 17 N -0.258 5.258 18 C -0.043 4.043 19 C -0.424 4.424 20 S 0.502 5.498 21 C -0.069 4.069 22 C -0.152 4.152 23 C -0.154 4.154 24 C -0.150 4.150 25 C -0.075 4.075 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.111 0.889 30 H 0.078 0.922 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.252 0.748 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.097 0.903 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.954 -1.065 19.131 19.791 hybrid contribution 0.622 -1.225 0.236 1.394 sum -4.332 -2.290 19.367 19.977 Atomic orbital electron populations 1.22250 0.96271 1.01838 1.02658 1.21479 0.93890 0.83807 1.02949 1.47608 1.66046 1.13488 1.05678 1.19350 0.96589 0.93571 0.76423 1.21461 0.96798 1.32201 1.06411 0.92324 1.24913 0.97931 0.94791 0.96298 1.69929 1.35655 1.33227 1.14377 0.86433 0.84501 0.78127 0.78315 1.19803 1.20928 1.20791 1.15885 0.79694 0.84861 0.79927 1.90826 1.51761 1.16361 1.83830 1.42268 1.68389 1.17667 1.01504 1.22902 1.01395 0.96263 0.88612 1.66147 1.26029 1.37435 0.96156 1.20150 1.00379 0.89608 0.94161 1.26371 1.14107 1.01036 1.00902 1.85188 1.60917 1.08490 0.95188 1.20289 0.97157 0.94759 0.94703 1.21243 0.97888 0.98279 0.97752 1.20787 1.01112 0.95377 0.98125 1.21121 0.98082 0.95386 1.00421 1.20548 0.99128 0.99788 0.87999 0.93054 0.91591 0.91752 0.88948 0.92185 0.94341 0.93451 0.92655 0.74768 0.90995 0.90494 0.91750 0.91567 0.92348 0.92515 0.91530 0.91881 0.90323 0.90388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 10.24 37.16 0.38 -1.83 16 2 C 0.10 1.57 5.89 -4.04 -0.02 1.55 16 3 N -0.59 -12.13 2.46 -180.80 -0.44 -12.57 16 4 C 0.26 6.48 5.16 -5.19 -0.03 6.46 16 5 C -0.53 -14.56 9.39 -34.44 -0.32 -14.89 16 6 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -25.84 13.29 55.43 0.74 -25.10 16 9 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 10 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 C 0.70 14.50 8.24 -86.92 -0.72 13.79 16 14 O -0.55 -13.30 13.39 5.30 0.07 -13.23 16 15 N -0.64 -11.18 5.27 -17.51 -0.09 -11.27 16 16 C 0.28 4.89 8.20 -87.53 -0.72 4.17 16 17 N -0.53 -8.80 10.59 -10.47 -0.11 -8.91 16 18 C 0.09 1.26 6.04 -82.77 -0.50 0.76 16 19 C -0.30 -4.21 5.68 -35.38 -0.20 -4.41 16 20 S 0.25 4.27 20.23 -107.50 -2.17 2.09 16 21 C -0.03 -0.31 5.94 -26.96 -0.16 -0.47 16 22 C -0.11 -1.02 5.62 -27.53 -0.15 -1.18 16 23 C -0.12 -0.93 5.12 -28.76 -0.15 -1.08 16 24 C -0.11 -1.01 5.57 -27.71 -0.15 -1.16 16 25 C -0.03 -0.37 5.95 -26.74 -0.16 -0.53 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.09 1.44 8.07 -51.93 -0.42 1.02 16 30 H 0.06 0.78 6.36 -51.93 -0.33 0.45 16 31 H 0.04 0.96 8.07 -51.93 -0.42 0.54 16 32 H 0.05 1.33 7.42 -51.93 -0.39 0.95 16 33 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 34 H 0.41 6.06 6.55 -40.82 -0.27 5.79 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.08 0.71 7.88 -51.93 -0.41 0.30 16 37 H 0.06 0.67 7.91 -51.93 -0.41 0.26 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.42 7.70 -51.93 -0.40 0.02 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.67 7.90 -51.93 -0.41 0.26 16 43 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.08 0.72 7.88 -51.93 -0.41 0.31 16 LS Contribution 365.58 15.07 5.51 5.51 Total: -1.00 -31.74 365.58 -11.31 -43.05 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -6.79 Total: 1.11 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: -3.00 Total: 2.84 kcal Atomic # 7 Polarization: -57.95 SS G_CDS: 0.09 Total: -57.86 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.07 Total: -13.23 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: 4.27 SS G_CDS: -2.17 Total: 2.09 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.74 -11.31 -43.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000138368654.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.786 kcal (2) G-P(sol) polarization free energy of solvation -31.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds