Wall clock time and date at job start Tue Mar 31 2020 13:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.46681 * 2 1 4 4 C 1.46500 * 119.99692 * 269.99902 * 3 2 1 5 5 C 1.50710 * 109.47046 * 270.00163 * 4 3 2 6 6 H 1.08004 * 119.99712 * 359.97438 * 5 4 3 7 7 C 1.37874 * 119.99742 * 180.02562 * 5 4 3 8 8 N 1.31509 * 120.00433 * 0.02562 * 7 5 4 9 9 Si 1.86808 * 119.99733 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46926 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.46979 * 119.99840 * 9 7 5 12 12 H 1.48504 * 109.46844 * 240.00224 * 9 7 5 13 13 C 1.34776 * 120.00350 * 90.00152 * 3 2 1 14 14 O 1.21576 * 120.00221 * 179.97438 * 13 3 2 15 15 N 1.34780 * 119.99701 * 359.97438 * 13 3 2 16 16 C 1.39003 * 120.00063 * 179.97438 * 15 13 3 17 17 N 1.29392 * 124.99386 * 179.97438 * 16 15 13 18 18 C 1.33040 * 117.46180 * 180.20632 * 17 16 15 19 19 C 1.33065 * 113.27002 * 359.25972 * 18 17 16 20 20 S 1.71011 * 124.98821 * 359.96553 * 16 15 13 21 21 C 1.52155 * 124.89237 * 180.84099 * 19 18 17 22 22 C 1.53380 * 107.39195 * 293.46710 * 21 19 18 23 23 C 1.51026 * 110.97030 * 80.22297 * 22 21 19 24 24 C 1.50939 * 116.04735 * 288.08526 * 23 22 21 25 25 C 1.52884 * 123.37718 * 179.01055 * 18 17 16 26 26 H 1.08995 * 109.47413 * 299.99682 * 1 2 3 27 27 H 1.09000 * 109.47533 * 60.00506 * 1 2 3 28 28 H 1.09005 * 109.46824 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47049 * 239.99675 * 2 1 3 30 30 H 1.09000 * 109.46726 * 119.99940 * 2 1 3 31 31 H 1.08992 * 109.47634 * 30.00070 * 4 3 2 32 32 H 1.08997 * 109.47075 * 150.00734 * 4 3 2 33 33 H 0.96998 * 120.00217 * 179.97438 * 8 7 5 34 34 H 0.96999 * 120.00111 * 0.02562 * 15 13 3 35 35 H 1.09002 * 109.87423 * 173.99341 * 21 19 18 36 36 H 1.09001 * 109.93305 * 52.97773 * 21 19 18 37 37 H 1.08997 * 109.18015 * 319.84220 * 22 21 19 38 38 H 1.09001 * 109.14034 * 200.58062 * 22 21 19 39 39 H 1.09000 * 108.16574 * 49.79419 * 23 22 21 40 40 H 1.09004 * 108.16267 * 166.37700 * 23 22 21 41 41 H 1.09000 * 109.06718 * 193.05205 * 24 23 22 42 42 H 1.08997 * 109.06792 * 311.99830 * 24 23 22 43 43 H 1.08999 * 109.86132 * 4.68829 * 25 18 17 44 44 H 1.08995 * 109.85544 * 125.70793 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2623 2.0718 -1.2688 5 6 3.6857 1.8350 -1.7038 6 1 4.3428 1.2309 -1.0957 7 6 4.1492 2.3905 -2.8775 8 7 3.3495 3.1273 -3.6172 9 14 5.9138 2.0976 -3.4164 10 1 6.6014 1.2425 -2.4158 11 1 5.9217 1.4190 -4.7372 12 1 6.6209 3.3990 -3.5241 13 6 2.2429 2.0167 1.1672 14 8 2.6485 3.1628 1.1671 15 7 2.0178 1.3815 2.3344 16 6 2.2500 2.0366 3.5382 17 7 2.0669 1.5212 4.7108 18 6 2.3337 2.2865 5.7658 19 6 2.7763 3.4978 5.4381 20 16 2.8198 3.6421 3.6869 21 6 3.1769 4.5768 6.4333 22 6 1.9078 5.0056 7.1803 23 6 1.5691 4.0247 8.2777 24 6 1.0403 2.6843 7.8285 25 6 2.1449 1.8229 7.2105 26 1 -0.3634 0.5137 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.5816 1.6877 -2.0284 32 1 2.0954 3.1410 -1.1385 33 1 3.6758 3.5183 -4.4427 34 1 1.6946 0.4669 2.3344 35 1 3.6015 5.4299 5.9040 36 1 3.9059 4.1790 7.1393 37 1 1.0774 5.0556 6.4760 38 1 2.0663 5.9914 7.6176 39 1 2.4678 3.8542 8.8704 40 1 0.8231 4.4845 8.9260 41 1 0.6197 2.1614 8.6875 42 1 0.2550 2.8409 7.0890 43 1 1.8494 0.7739 7.2272 44 1 3.0731 1.9559 7.7662 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000138368654.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:29 Heat of formation + Delta-G solvation = -12.059322 kcal Electronic energy + Delta-G solvation = -25182.925130 eV Core-core repulsion = 21646.927476 eV Total energy + Delta-G solvation = -3535.997654 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.81620 -40.86365 -37.96189 -37.23379 -35.83447 -34.74044 -33.06957 -31.74636 -31.29424 -29.14087 -26.27402 -26.14791 -24.92354 -24.41363 -23.51387 -21.81951 -21.16882 -20.22770 -19.10646 -18.66544 -18.23860 -18.00462 -16.99876 -16.82682 -16.22755 -15.96080 -15.57064 -15.32336 -15.24720 -14.86528 -14.65910 -14.45951 -14.36935 -13.80673 -13.78850 -13.57165 -13.33809 -13.13529 -13.02525 -12.75423 -12.58344 -12.39107 -12.24725 -12.16894 -11.98100 -11.83426 -11.71828 -11.49207 -11.47364 -11.29354 -10.91321 -10.66343 -10.64673 -10.07935 -9.71541 -8.96609 -8.23421 -6.37585 -0.12726 0.21564 0.96566 1.30390 1.36777 1.39581 1.50929 1.62994 2.14243 2.37362 2.72710 3.07275 3.46273 3.80966 3.96530 3.98040 4.12304 4.19486 4.27394 4.32631 4.42066 4.50039 4.64019 4.73427 4.74518 4.80377 4.87197 4.90974 4.94545 5.01341 5.07061 5.16999 5.24143 5.29250 5.29956 5.31710 5.34612 5.46168 5.51613 5.54760 5.62447 5.81906 6.02486 6.62249 6.69867 6.86979 7.20657 7.36155 8.83619 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.019486 B = 0.003183 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.580561 B = 8793.701790 C = 9611.478473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.096 3.904 3 N -0.599 5.599 4 C 0.278 3.722 5 C -0.543 4.543 6 H 0.052 0.948 7 C 0.013 3.987 8 N -0.925 5.925 9 Si 0.965 3.035 10 H -0.270 1.270 11 H -0.269 1.269 12 H -0.282 1.282 13 C 0.694 3.306 14 O -0.593 6.593 15 N -0.629 5.629 16 C 0.255 3.745 17 N -0.531 5.531 18 C 0.070 3.930 19 C -0.279 4.279 20 S 0.193 5.807 21 C -0.031 4.031 22 C -0.111 4.111 23 C -0.117 4.117 24 C -0.109 4.109 25 C -0.031 4.031 26 H 0.050 0.950 27 H 0.048 0.952 28 H 0.100 0.900 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.035 0.965 32 H 0.006 0.994 33 H 0.268 0.732 34 H 0.425 0.575 35 H 0.073 0.927 36 H 0.099 0.901 37 H 0.043 0.957 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.089 0.911 42 H 0.040 0.960 43 H 0.079 0.921 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.847 -3.410 22.943 23.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.026 4.026 3 N -0.333 5.333 4 C 0.157 3.843 5 C -0.582 4.582 6 H 0.070 0.930 7 C -0.187 4.187 8 N -0.564 5.564 9 Si 0.789 3.211 10 H -0.195 1.195 11 H -0.194 1.194 12 H -0.208 1.208 13 C 0.394 3.606 14 O -0.472 6.472 15 N -0.285 5.285 16 C -0.114 4.114 17 N -0.255 5.255 18 C -0.060 4.060 19 C -0.401 4.401 20 S 0.444 5.556 21 C -0.071 4.071 22 C -0.149 4.149 23 C -0.155 4.155 24 C -0.147 4.147 25 C -0.071 4.071 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.119 0.881 29 H 0.108 0.892 30 H 0.106 0.894 31 H 0.053 0.947 32 H 0.024 0.976 33 H 0.077 0.923 34 H 0.267 0.733 35 H 0.092 0.908 36 H 0.117 0.883 37 H 0.062 0.938 38 H 0.106 0.894 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.108 0.892 42 H 0.059 0.941 43 H 0.098 0.902 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.525 -2.329 21.870 22.454 hybrid contribution 0.440 -0.835 -0.466 1.053 sum -4.085 -3.165 21.404 22.019 Atomic orbital electron populations 1.22173 0.94164 1.03890 1.01804 1.21804 0.95590 0.81040 1.04173 1.47475 1.66321 1.15224 1.04234 1.18789 0.95561 0.91653 0.78290 1.21705 0.97792 1.32160 1.06559 0.93006 1.25762 1.02097 0.94434 0.96374 1.70034 1.37569 1.33984 1.14852 0.85412 0.79312 0.77980 0.78352 1.19451 1.19405 1.20762 1.15945 0.79434 0.84485 0.80724 1.90807 1.53357 1.18198 1.84808 1.41847 1.68134 1.17904 1.00601 1.22981 1.03175 0.96341 0.88880 1.66200 1.25214 1.37844 0.96216 1.20883 1.00167 0.89597 0.95329 1.26700 1.12541 1.01887 0.98927 1.85333 1.61808 1.09623 0.98838 1.20526 0.98515 0.93793 0.94298 1.21247 0.96139 0.99887 0.97628 1.20794 1.02377 0.94438 0.97849 1.21123 0.96902 0.96117 1.00513 1.20727 1.00744 1.00117 0.85499 0.93097 0.93245 0.88146 0.89213 0.89420 0.94749 0.97611 0.92320 0.73310 0.90806 0.88260 0.93816 0.89437 0.90575 0.91016 0.89223 0.94098 0.90194 0.88317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.01 10.24 71.98 0.74 -3.27 16 2 C 0.10 2.89 5.89 86.38 0.51 3.40 16 3 N -0.60 -25.21 2.46 -844.21 -2.07 -27.29 16 4 C 0.28 14.55 5.16 85.64 0.44 15.00 16 5 C -0.54 -30.71 9.39 25.60 0.24 -30.47 16 6 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 7 C 0.01 0.73 5.46 84.65 0.46 1.19 16 8 N -0.92 -54.77 13.29 21.45 0.28 -54.48 16 9 Si 0.96 44.52 29.54 68.60 2.03 46.55 16 10 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 12 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 13 C 0.69 30.03 8.24 179.05 1.48 31.50 16 14 O -0.59 -30.25 13.39 -3.96 -0.05 -30.30 16 15 N -0.63 -22.20 5.27 -327.59 -1.73 -23.93 16 16 C 0.26 9.13 8.20 179.27 1.47 10.60 16 17 N -0.53 -17.24 10.59 -187.05 -1.98 -19.23 16 18 C 0.07 1.92 6.04 41.92 0.25 2.17 16 19 C -0.28 -7.56 5.68 24.99 0.14 -7.41 16 20 S 0.19 6.81 20.23 -56.49 -1.14 5.67 16 21 C -0.03 -0.59 5.94 30.44 0.18 -0.41 16 22 C -0.11 -1.73 5.62 30.08 0.17 -1.56 16 23 C -0.12 -1.45 5.12 29.28 0.15 -1.30 16 24 C -0.11 -1.64 5.57 29.96 0.17 -1.47 16 25 C -0.03 -0.57 5.95 30.59 0.18 -0.39 16 26 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 29 H 0.09 2.76 8.07 -2.39 -0.02 2.74 16 30 H 0.09 2.14 6.36 -2.39 -0.02 2.13 16 31 H 0.03 1.81 8.07 -2.39 -0.02 1.79 16 32 H 0.01 0.35 7.42 -2.39 -0.02 0.33 16 33 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 34 H 0.43 12.26 6.55 -92.71 -0.61 11.65 16 35 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.10 1.49 7.88 -2.39 -0.02 1.47 16 37 H 0.04 0.87 7.91 -2.39 -0.02 0.85 16 38 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.08 0.72 7.70 -2.39 -0.02 0.71 16 40 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.04 0.80 7.90 -2.39 -0.02 0.79 16 43 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.10 1.43 7.88 -2.39 -0.02 1.41 16 Total: -1.00 -71.78 365.58 2.31 -69.47 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: 0.40 Total: 15.96 kcal Atomic # 6 Polarization: 10.99 SS G_CDS: 6.58 Total: 17.57 kcal Atomic # 7 Polarization: -119.43 SS G_CDS: -5.50 Total: -124.92 kcal Atomic # 8 Polarization: -30.25 SS G_CDS: -0.05 Total: -30.30 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Atomic # 16 Polarization: 6.81 SS G_CDS: -1.14 Total: 5.67 kcal Total: -71.78 2.31 -69.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000138368654.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.409 kcal (2) G-P(sol) polarization free energy of solvation -71.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds