Wall clock time and date at job start Tue Mar 31 2020 13:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.40067 * 126.04691 * 2 1 4 4 C 1.30849 * 108.37391 * 179.97438 * 3 2 1 5 5 C 1.50698 * 125.83432 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.46824 * 145.03062 * 5 4 3 7 7 C 1.52997 * 109.46991 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.47131 * 299.99311 * 7 6 5 9 9 C 1.53002 * 109.46972 * 60.00459 * 8 7 6 10 10 C 1.52997 * 109.46817 * 299.99733 * 9 8 7 11 11 C 1.39760 * 108.32381 * 0.26467 * 4 3 2 12 12 C 1.35262 * 126.04645 * 179.97438 * 2 1 3 13 13 N 1.39474 * 126.21648 * 0.07514 * 12 2 1 14 14 C 1.34773 * 120.00004 * 180.02562 * 13 12 2 15 15 O 1.21296 * 119.99876 * 359.97438 * 14 13 12 16 16 C 1.50700 * 120.00243 * 179.97438 * 14 13 12 17 17 S 1.81000 * 109.47185 * 179.97438 * 16 14 13 18 18 C 1.76205 * 99.99850 * 180.02562 * 17 16 14 19 19 H 1.08000 * 119.99834 * 359.97438 * 18 17 16 20 20 C 1.38796 * 119.99687 * 180.02562 * 18 17 16 21 21 N 1.31624 * 120.00417 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99775 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47274 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47134 * 119.99649 * 22 20 18 25 25 H 1.48502 * 109.47495 * 239.99844 * 22 20 18 26 26 H 1.09007 * 109.46842 * 90.02856 * 1 2 3 27 27 H 1.08992 * 109.47369 * 210.02248 * 1 2 3 28 28 H 1.09003 * 109.47373 * 330.02818 * 1 2 3 29 29 H 1.08993 * 109.47304 * 25.02255 * 5 4 3 30 30 H 1.09002 * 109.46719 * 299.99679 * 6 5 4 31 31 H 1.08993 * 109.47839 * 59.99520 * 6 5 4 32 32 H 1.09001 * 109.47289 * 179.97438 * 7 6 5 33 33 H 1.09000 * 109.47611 * 59.99933 * 7 6 5 34 34 H 1.08996 * 109.47452 * 300.00000 * 8 7 6 35 35 H 1.09000 * 109.47054 * 180.02562 * 8 7 6 36 36 H 1.09002 * 109.47070 * 179.97438 * 9 8 7 37 37 H 1.08996 * 109.47407 * 59.99513 * 9 8 7 38 38 H 1.09001 * 109.47502 * 300.00518 * 10 9 8 39 39 H 1.09001 * 109.47289 * 180.02562 * 10 9 8 40 40 H 1.07998 * 126.08134 * 179.74076 * 11 4 3 41 41 H 0.97004 * 120.00224 * 359.97438 * 13 12 2 42 42 H 1.09000 * 109.47156 * 300.00308 * 16 14 13 43 43 H 1.09001 * 109.46572 * 59.99763 * 16 14 13 44 44 H 0.97002 * 120.00545 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1325 0.0000 4 6 3.5360 0.7353 0.0006 5 6 4.7475 1.6315 0.0002 6 6 5.8603 0.9850 0.8277 7 6 7.0905 1.8946 0.8268 8 6 7.5750 2.0957 -0.6104 9 6 6.4623 2.7422 -1.4379 10 6 5.2321 1.8326 -1.4371 11 6 3.5519 -0.6622 -0.0052 12 6 2.2610 -1.0936 0.0005 13 7 1.8361 -2.4221 -0.0004 14 6 2.7424 -3.4195 0.0008 15 8 3.9277 -3.1618 0.0021 16 6 2.2834 -4.8549 0.0004 17 16 3.7250 -5.9494 0.0014 18 6 2.9193 -7.5164 0.0000 19 1 1.8406 -7.5690 -0.0007 20 6 3.6711 -8.6832 0.0009 21 7 4.9858 -8.6191 0.0022 22 14 2.8170 -10.3445 0.0001 23 1 1.3456 -10.1447 -0.0020 24 1 3.2145 -11.1049 -1.2120 25 1 3.2120 -11.1048 1.2130 26 1 -0.3633 -0.0005 -1.0277 27 1 -0.3634 -0.8897 0.5141 28 1 -0.3634 0.8902 0.5134 29 1 4.4857 2.5964 0.4341 30 1 5.5149 0.8413 1.8515 31 1 6.1220 0.0200 0.3937 32 1 7.8831 1.4343 1.4167 33 1 6.8291 2.8598 1.2606 34 1 7.8365 1.1306 -1.0441 35 1 8.4518 2.7434 -0.6109 36 1 6.8076 2.8859 -2.4618 37 1 6.2008 3.7074 -1.0042 38 1 5.4935 0.8674 -1.8708 39 1 4.4394 2.2929 -2.0270 40 1 4.4318 -1.2883 -0.0102 41 1 0.8882 -2.6282 -0.0011 42 1 1.6822 -5.0443 0.8897 43 1 1.6843 -5.0444 -0.8903 44 1 5.5112 -9.4345 0.0024 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000150989415.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:00 Heat of formation + Delta-G solvation = 21.653391 kcal Electronic energy + Delta-G solvation = -24536.819902 eV Core-core repulsion = 21002.284141 eV Total energy + Delta-G solvation = -3534.535761 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.52661 -39.31631 -38.35501 -34.87006 -33.44404 -32.50600 -30.88099 -30.81005 -30.25395 -28.07410 -26.35190 -25.56550 -23.22693 -22.63513 -21.91300 -20.21327 -20.14921 -19.22785 -17.97558 -17.46857 -16.42266 -15.93721 -15.42532 -15.24307 -14.92980 -14.87201 -14.30763 -14.28295 -14.19796 -13.96735 -13.67074 -13.25620 -13.03378 -12.73170 -12.69297 -12.55689 -12.27050 -12.22543 -12.10577 -11.32545 -11.15520 -11.12543 -11.10546 -10.84825 -10.80308 -10.67671 -10.40148 -10.29017 -10.13823 -9.90017 -9.54527 -9.14669 -8.77265 -8.36005 -7.97891 -6.60345 -6.29406 -4.01346 1.79665 2.12197 2.73134 2.90721 3.15392 3.17205 3.22163 3.26662 3.48382 4.11724 4.29214 4.62402 4.66439 4.73620 4.78887 4.93584 5.03608 5.06336 5.13993 5.17965 5.22688 5.39383 5.42695 5.45846 5.48020 5.58063 5.65559 5.67539 5.68543 5.74221 5.94178 5.95804 5.99764 6.07159 6.12321 6.14561 6.17067 6.28476 6.29744 6.46634 6.85184 7.05259 7.34299 7.52596 7.84637 8.25284 8.27680 9.16227 10.77981 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.015739 B = 0.002737 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.635104 B =10227.918259 C =11696.899133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.397 5.397 3 N -0.299 5.299 4 C 0.095 3.905 5 C 0.000 4.000 6 C -0.112 4.112 7 C -0.118 4.118 8 C -0.122 4.122 9 C -0.117 4.117 10 C -0.109 4.109 11 C -0.275 4.275 12 C 0.314 3.686 13 N -0.656 5.656 14 C 0.538 3.462 15 O -0.478 6.478 16 C -0.150 4.150 17 S -0.051 6.051 18 C -0.538 4.538 19 H 0.074 0.926 20 C 0.074 3.926 21 N -0.866 5.866 22 Si 0.920 3.080 23 H -0.272 1.272 24 H -0.279 1.279 25 H -0.279 1.279 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.069 0.931 39 H 0.061 0.939 40 H 0.175 0.825 41 H 0.408 0.592 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.002 20.854 -0.383 21.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.185 5.185 3 N -0.122 5.122 4 C -0.071 4.071 5 C -0.021 4.021 6 C -0.150 4.150 7 C -0.155 4.155 8 C -0.160 4.160 9 C -0.154 4.154 10 C -0.147 4.147 11 C -0.307 4.307 12 C 0.094 3.906 13 N -0.306 5.306 14 C 0.324 3.676 15 O -0.348 6.348 16 C -0.301 4.301 17 S 0.175 5.825 18 C -0.686 4.686 19 H 0.092 0.908 20 C -0.135 4.135 21 N -0.501 5.501 22 Si 0.746 3.254 23 H -0.196 1.196 24 H -0.205 1.205 25 H -0.205 1.205 26 H 0.090 0.910 27 H 0.098 0.902 28 H 0.109 0.891 29 H 0.099 0.901 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.192 0.808 41 H 0.243 0.757 42 H 0.114 0.886 43 H 0.114 0.886 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.802 22.072 -0.378 22.400 hybrid contribution -2.277 -2.280 0.002 3.222 sum -6.079 19.792 -0.377 20.708 Atomic orbital electron populations 1.21752 0.74885 1.04216 1.03114 1.48379 1.05965 1.02348 1.61780 1.77331 1.01301 1.05181 1.28347 1.22140 0.92893 0.93920 0.98165 1.19508 0.89237 0.96522 0.96823 1.21568 0.93965 0.99455 1.00004 1.21524 0.97551 0.99713 0.96722 1.21566 0.97643 1.01115 0.95641 1.21522 0.95307 0.98641 0.99956 1.21541 0.97293 1.00570 0.95293 1.21556 0.95979 0.94091 1.19026 1.18105 0.90974 0.80407 1.01097 1.43164 1.11112 1.01921 1.74372 1.20502 0.85731 0.86268 0.75082 1.90660 1.16286 1.83236 1.44628 1.23525 1.07825 0.93265 1.05486 1.85463 1.02956 0.97326 1.96758 1.22885 0.95112 0.91297 1.59295 0.90752 1.24995 0.94888 0.99247 0.94399 1.70011 1.04448 1.29028 1.46595 0.86100 0.79348 0.81969 0.77973 1.19616 1.20511 1.20507 0.90963 0.90229 0.89068 0.90131 0.91701 0.90711 0.91754 0.92188 0.91618 0.92256 0.91978 0.92102 0.91230 0.92001 0.80805 0.75728 0.88630 0.88625 0.92108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.82 11.28 59.85 0.68 1.50 16 2 N -0.40 -5.22 4.02 -67.18 -0.27 -5.49 16 3 N -0.30 -4.41 12.56 33.65 0.42 -3.99 16 4 C 0.10 1.38 6.12 -82.44 -0.50 0.87 16 5 C 0.00 -0.01 2.65 -91.77 -0.24 -0.25 16 6 C -0.11 -1.25 4.80 -26.73 -0.13 -1.38 16 7 C -0.12 -1.07 5.92 -26.73 -0.16 -1.23 16 8 C -0.12 -1.06 5.92 -26.73 -0.16 -1.22 16 9 C -0.12 -1.01 5.92 -26.73 -0.16 -1.17 16 10 C -0.11 -1.16 5.18 -26.73 -0.14 -1.29 16 11 C -0.28 -4.47 8.82 -39.78 -0.35 -4.82 16 12 C 0.31 4.69 7.66 -153.16 -1.17 3.52 16 13 N -0.66 -8.96 5.42 -11.46 -0.06 -9.02 16 14 C 0.54 9.48 7.81 -10.99 -0.09 9.39 16 15 O -0.48 -10.10 12.99 5.54 0.07 -10.03 16 16 C -0.15 -2.79 6.16 36.01 0.22 -2.57 16 17 S -0.05 -1.32 20.57 -107.50 -2.21 -3.53 16 18 C -0.54 -14.70 9.50 30.94 0.29 -14.41 16 19 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 20 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 21 N -0.87 -25.38 13.22 55.49 0.73 -24.64 16 22 Si 0.92 20.80 29.55 -169.99 -5.02 15.77 16 23 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 26 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 27 H 0.08 0.46 7.50 -51.93 -0.39 0.07 16 28 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.94 7.30 -51.93 -0.38 0.56 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.17 3.15 5.20 -52.49 -0.27 2.88 16 41 H 0.41 3.95 7.97 -40.82 -0.33 3.62 16 42 H 0.10 1.60 8.14 -51.92 -0.42 1.18 16 43 H 0.10 1.60 8.14 -51.91 -0.42 1.18 16 44 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 370.97 15.07 5.59 5.59 Total: -1.00 -33.78 370.97 -9.58 -43.36 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -6.83 Total: 3.08 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: -2.00 Total: -11.10 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: 0.82 Total: -43.14 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.07 Total: -10.03 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: -1.32 SS G_CDS: -2.21 Total: -3.53 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.78 -9.58 -43.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000150989415.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.018 kcal (2) G-P(sol) polarization free energy of solvation -33.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds