Wall clock time and date at job start Tue Mar 31 2020 13:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46502 * 109.46816 * 2 1 4 4 C 1.36905 * 119.99765 * 263.37764 * 3 2 1 5 5 H 1.07995 * 120.00257 * 194.49093 * 4 3 2 6 6 C 1.39020 * 120.00078 * 14.49184 * 4 3 2 7 7 N 1.31386 * 120.00115 * 20.80569 * 6 4 3 8 8 Si 1.86807 * 120.00075 * 200.81140 * 6 4 3 9 9 H 1.48502 * 109.47029 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47117 * 119.99912 * 8 6 4 11 11 H 1.48500 * 109.46966 * 239.99906 * 8 6 4 12 12 C 1.34775 * 120.00133 * 83.65089 * 3 2 1 13 13 O 1.21639 * 119.99750 * 175.00563 * 12 3 2 14 14 C 1.47292 * 119.99893 * 355.00739 * 12 3 2 15 15 C 1.39818 * 121.00651 * 83.18541 * 14 12 3 16 16 C 1.50703 * 120.49946 * 359.97438 * 15 14 12 17 17 N 1.32203 * 118.99682 * 179.97438 * 15 14 12 18 18 C 1.31993 * 121.21947 * 0.02562 * 17 15 14 19 19 C 1.50698 * 118.87397 * 180.02562 * 18 17 15 20 20 C 1.53000 * 109.47455 * 120.00048 * 19 18 17 21 21 C 1.53002 * 109.47092 * 239.99862 * 19 18 17 22 22 N 1.31658 * 122.25667 * 359.97438 * 18 17 15 23 23 C 1.33052 * 120.83603 * 359.76986 * 22 18 17 24 24 S 1.76204 * 120.65167 * 180.24349 * 23 22 18 25 25 C 1.80997 * 99.99694 * 0.24280 * 24 23 22 26 26 H 1.09002 * 109.47252 * 56.06501 * 1 2 3 27 27 H 1.09002 * 109.46605 * 176.06003 * 1 2 3 28 28 H 1.09000 * 109.47537 * 296.06048 * 1 2 3 29 29 H 1.08998 * 109.46954 * 239.99900 * 2 1 3 30 30 H 1.08997 * 109.47258 * 119.99685 * 2 1 3 31 31 H 0.96998 * 119.99796 * 180.02562 * 7 6 4 32 32 H 1.08997 * 109.46770 * 93.48252 * 16 15 14 33 33 H 1.09006 * 109.46770 * 213.47606 * 16 15 14 34 34 H 1.08999 * 109.47171 * 333.47643 * 16 15 14 35 35 H 1.09001 * 109.47363 * 359.97438 * 19 18 17 36 36 H 1.09001 * 109.47315 * 59.99382 * 20 19 18 37 37 H 1.09002 * 109.47349 * 180.02562 * 20 19 18 38 38 H 1.09005 * 109.46813 * 300.00052 * 20 19 18 39 39 H 1.09008 * 109.47127 * 299.99484 * 21 19 18 40 40 H 1.09002 * 109.47345 * 59.99883 * 21 19 18 41 41 H 1.08995 * 109.47323 * 180.02562 * 21 19 18 42 42 H 1.09008 * 109.47130 * 180.02562 * 25 24 23 43 43 H 1.09000 * 109.47491 * 300.00065 * 25 24 23 44 44 H 1.08998 * 109.47603 * 59.99946 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3753 1.9810 -1.1777 5 1 2.9475 2.8969 -1.1656 6 6 2.0014 1.4111 -2.3894 7 7 0.9964 0.5661 -2.4355 8 14 2.9279 1.8467 -3.9519 9 1 4.0088 2.8138 -3.6332 10 1 3.5201 0.6163 -4.5355 11 1 1.9908 2.4567 -4.9292 12 6 2.1212 2.0597 1.1600 13 8 2.6112 3.1729 1.1721 14 6 1.6404 1.4530 2.4131 15 6 2.4414 0.5645 3.1369 16 6 3.8211 0.2062 2.6477 17 7 1.9702 0.0436 4.2569 18 6 0.7639 0.3472 4.6981 19 6 0.2800 -0.2770 5.9816 20 6 -0.0319 0.8233 6.9980 21 6 -0.9858 -1.0914 5.7072 22 7 -0.0309 1.1774 4.0559 23 6 0.3586 1.7549 2.9223 24 16 -0.7066 2.8701 2.0701 25 6 -2.1388 2.8441 3.1765 26 1 -0.3634 0.5737 -0.8526 27 1 -0.3632 -1.0253 -0.0706 28 1 -0.3634 0.4515 0.9232 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 0.7358 0.1682 -3.2808 32 1 4.5536 0.8681 3.1096 33 1 4.0447 -0.8265 2.9157 34 1 3.8627 0.3176 1.5643 35 1 1.0538 -0.9325 6.3812 36 1 -0.8058 1.4785 6.5982 37 1 -0.3814 0.3717 7.9265 38 1 0.8699 1.4035 7.1935 39 1 -1.7599 -0.4362 5.3074 40 1 -0.7637 -1.8753 4.9831 41 1 -1.3361 -1.5425 6.6355 42 1 -2.9141 3.5016 2.7829 43 1 -2.5260 1.8275 3.2459 44 1 -1.8393 3.1870 4.1668 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154979874.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:53 Heat of formation + Delta-G solvation = 13.697793 kcal Electronic energy + Delta-G solvation = -26662.672755 eV Core-core repulsion = 23127.792013 eV Total energy + Delta-G solvation = -3534.880742 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.88463 -38.47861 -35.63995 -35.07669 -33.99154 -32.11904 -31.12009 -29.44792 -28.91356 -28.26531 -27.21194 -25.65225 -24.12346 -23.32239 -22.23760 -20.57860 -19.45353 -17.95916 -17.05566 -16.88136 -16.38367 -15.21056 -15.11507 -14.79716 -14.33455 -14.14647 -13.89048 -13.51847 -13.49370 -13.29367 -13.13679 -13.04619 -12.65628 -12.55614 -12.38066 -12.16331 -11.94411 -11.88828 -11.83580 -11.34329 -11.26093 -11.15141 -11.05003 -10.91698 -10.74324 -10.54437 -10.36953 -10.23734 -10.19506 -9.87622 -9.12395 -9.02822 -8.98001 -8.50952 -7.79041 -7.37405 -6.38934 -3.87975 1.07768 1.24254 1.70042 2.40520 3.09045 3.23338 3.30277 3.65484 3.82263 3.97876 4.09749 4.39191 4.72261 4.91445 4.97568 5.07360 5.10329 5.15569 5.30125 5.33017 5.42514 5.57257 5.62330 5.68342 5.78941 5.79906 5.82421 5.89354 5.90957 6.05884 6.11870 6.17213 6.18853 6.31861 6.55804 6.60620 6.64428 6.79408 7.13073 7.20441 7.42967 7.78252 8.01121 8.31063 8.43162 9.08470 9.32258 9.87308 10.58878 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.017691 B = 0.004663 C = 0.004326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.351994 B = 6003.757325 C = 6471.273579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.126 3.874 3 N -0.418 5.418 4 C -0.305 4.305 5 H 0.106 0.894 6 C 0.033 3.967 7 N -0.861 5.861 8 Si 0.922 3.078 9 H -0.267 1.267 10 H -0.280 1.280 11 H -0.282 1.282 12 C 0.485 3.515 13 O -0.575 6.575 14 C -0.170 4.170 15 C 0.206 3.794 16 C -0.108 4.108 17 N -0.528 5.528 18 C 0.332 3.668 19 C -0.022 4.022 20 C -0.139 4.139 21 C -0.139 4.139 22 N -0.524 5.524 23 C 0.179 3.821 24 S 0.003 5.997 25 C -0.153 4.153 26 H 0.102 0.898 27 H 0.032 0.968 28 H 0.025 0.975 29 H 0.097 0.903 30 H 0.026 0.974 31 H 0.268 0.732 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.053 0.947 39 H 0.065 0.935 40 H 0.054 0.946 41 H 0.062 0.938 42 H 0.099 0.901 43 H 0.086 0.914 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.632 -4.130 12.015 13.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.002 3.998 3 N -0.135 5.135 4 C -0.433 4.433 5 H 0.124 0.876 6 C -0.171 4.171 7 N -0.500 5.500 8 Si 0.749 3.251 9 H -0.191 1.191 10 H -0.206 1.206 11 H -0.208 1.208 12 C 0.271 3.729 13 O -0.460 6.460 14 C -0.185 4.185 15 C 0.059 3.941 16 C -0.165 4.165 17 N -0.245 5.245 18 C 0.061 3.939 19 C -0.043 4.043 20 C -0.197 4.197 21 C -0.197 4.197 22 N -0.243 5.243 23 C -0.077 4.077 24 S 0.242 5.758 25 C -0.323 4.323 26 H 0.121 0.879 27 H 0.051 0.949 28 H 0.044 0.956 29 H 0.115 0.885 30 H 0.045 0.955 31 H 0.078 0.922 32 H 0.105 0.895 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.112 0.888 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.118 0.882 43 H 0.105 0.895 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.767 -3.418 11.603 13.002 hybrid contribution 0.354 -0.367 -0.397 0.646 sum -4.413 -3.784 11.207 12.625 Atomic orbital electron populations 1.22248 0.96120 1.00231 1.02304 1.21361 0.95156 0.83302 0.99964 1.43714 1.53818 1.10884 1.05082 1.19782 1.31908 1.10036 0.81575 0.87592 1.25282 0.95469 0.97025 0.99283 1.70102 1.22760 1.30272 1.26859 0.85930 0.79801 0.78455 0.80960 1.19127 1.20592 1.20767 1.17170 0.86900 0.86086 0.82788 1.90655 1.49462 1.19989 1.85896 1.21479 0.95043 1.01211 1.00731 1.21747 0.95902 0.88234 0.88238 1.20848 0.90219 1.02799 1.02670 1.68006 1.15167 1.26821 1.14504 1.22963 0.85895 0.89828 0.95215 1.19901 0.98535 0.96788 0.89051 1.21777 1.02085 0.98077 0.97757 1.21776 0.96606 0.99648 1.01684 1.68407 1.36097 1.12131 1.07686 1.23709 0.94323 0.96287 0.93410 1.86712 1.09754 1.50163 1.29156 1.23526 0.99408 1.06326 1.02993 0.87931 0.94876 0.95643 0.88462 0.95528 0.92172 0.89524 0.89884 0.89375 0.88765 0.91637 0.91858 0.92824 0.91629 0.92706 0.91889 0.88218 0.89475 0.89605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.29 9.52 37.16 0.35 -2.94 16 2 C 0.13 2.84 4.83 -4.04 -0.02 2.82 16 3 N -0.42 -10.43 2.46 -116.08 -0.29 -10.71 16 4 C -0.31 -8.13 9.40 -15.00 -0.14 -8.28 16 5 H 0.11 2.99 7.31 -52.49 -0.38 2.61 16 6 C 0.03 0.83 4.92 -17.45 -0.09 0.74 16 7 N -0.86 -21.28 8.43 55.50 0.47 -20.81 16 8 Si 0.92 19.75 29.60 -169.99 -5.03 14.72 16 9 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 10 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 11 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 12 C 0.48 12.02 4.72 -12.58 -0.06 11.96 16 13 O -0.58 -16.18 16.72 5.24 0.09 -16.09 16 14 C -0.17 -3.67 3.92 -104.51 -0.41 -4.08 16 15 C 0.21 3.98 6.01 -81.84 -0.49 3.48 16 16 C -0.11 -1.81 9.50 36.01 0.34 -1.46 16 17 N -0.53 -9.47 10.21 -6.71 -0.07 -9.54 16 18 C 0.33 5.51 6.35 -157.14 -1.00 4.51 16 19 C -0.02 -0.27 3.25 -91.77 -0.30 -0.57 16 20 C -0.14 -1.49 9.08 37.16 0.34 -1.15 16 21 C -0.14 -1.50 9.08 37.16 0.34 -1.17 16 22 N -0.52 -9.19 8.64 -9.12 -0.08 -9.26 16 23 C 0.18 3.58 5.78 -15.90 -0.09 3.48 16 24 S 0.00 0.05 20.89 -107.50 -2.25 -2.19 16 25 C -0.15 -2.04 9.69 101.05 0.98 -1.06 16 26 H 0.10 2.50 6.11 -51.93 -0.32 2.18 16 27 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.02 0.53 5.17 -51.93 -0.27 0.26 16 29 H 0.10 2.31 6.13 -51.93 -0.32 1.99 16 30 H 0.03 0.56 5.73 -51.93 -0.30 0.26 16 31 H 0.27 6.27 8.31 -40.82 -0.34 5.93 16 32 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.09 1.62 6.31 -51.93 -0.33 1.30 16 35 H 0.09 1.09 8.09 -51.93 -0.42 0.67 16 36 H 0.06 0.74 8.00 -51.93 -0.42 0.33 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.75 8.00 -51.92 -0.42 0.34 16 40 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.10 1.08 8.14 -51.91 -0.42 0.66 16 43 H 0.09 1.13 8.14 -51.92 -0.42 0.71 16 44 H 0.08 1.09 8.14 -51.92 -0.42 0.67 16 LS Contribution 364.90 15.07 5.50 5.50 Total: -1.00 -29.79 364.90 -8.43 -38.21 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -6.53 Total: 3.87 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: -0.24 Total: 6.31 kcal Atomic # 7 Polarization: -50.36 SS G_CDS: 0.03 Total: -50.32 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: 0.09 Total: -16.09 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.03 Total: 14.72 kcal Atomic # 16 Polarization: 0.05 SS G_CDS: -2.25 Total: -2.19 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.79 -8.43 -38.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154979874.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.911 kcal (2) G-P(sol) polarization free energy of solvation -29.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds