Wall clock time and date at job start Tue Mar 31 2020 13:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46502 * 109.46816 * 2 1 4 4 C 1.36905 * 119.99765 * 263.37764 * 3 2 1 5 5 H 1.07995 * 120.00257 * 194.49093 * 4 3 2 6 6 C 1.39020 * 120.00078 * 14.49184 * 4 3 2 7 7 N 1.31386 * 120.00115 * 20.80569 * 6 4 3 8 8 Si 1.86807 * 120.00075 * 200.81140 * 6 4 3 9 9 H 1.48502 * 109.47029 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47117 * 119.99912 * 8 6 4 11 11 H 1.48500 * 109.46966 * 239.99906 * 8 6 4 12 12 C 1.34775 * 120.00133 * 83.65089 * 3 2 1 13 13 O 1.21639 * 119.99750 * 175.00563 * 12 3 2 14 14 C 1.47292 * 119.99893 * 355.00739 * 12 3 2 15 15 C 1.39818 * 121.00651 * 83.18541 * 14 12 3 16 16 C 1.50703 * 120.49946 * 359.97438 * 15 14 12 17 17 N 1.32203 * 118.99682 * 179.97438 * 15 14 12 18 18 C 1.31993 * 121.21947 * 0.02562 * 17 15 14 19 19 C 1.50698 * 118.87397 * 180.02562 * 18 17 15 20 20 C 1.53000 * 109.47455 * 120.00048 * 19 18 17 21 21 C 1.53002 * 109.47092 * 239.99862 * 19 18 17 22 22 N 1.31658 * 122.25667 * 359.97438 * 18 17 15 23 23 C 1.33052 * 120.83603 * 359.76986 * 22 18 17 24 24 S 1.76204 * 120.65167 * 180.24349 * 23 22 18 25 25 C 1.80997 * 99.99694 * 0.24280 * 24 23 22 26 26 H 1.09002 * 109.47252 * 56.06501 * 1 2 3 27 27 H 1.09002 * 109.46605 * 176.06003 * 1 2 3 28 28 H 1.09000 * 109.47537 * 296.06048 * 1 2 3 29 29 H 1.08998 * 109.46954 * 239.99900 * 2 1 3 30 30 H 1.08997 * 109.47258 * 119.99685 * 2 1 3 31 31 H 0.96998 * 119.99796 * 180.02562 * 7 6 4 32 32 H 1.08997 * 109.46770 * 93.48252 * 16 15 14 33 33 H 1.09006 * 109.46770 * 213.47606 * 16 15 14 34 34 H 1.08999 * 109.47171 * 333.47643 * 16 15 14 35 35 H 1.09001 * 109.47363 * 359.97438 * 19 18 17 36 36 H 1.09001 * 109.47315 * 59.99382 * 20 19 18 37 37 H 1.09002 * 109.47349 * 180.02562 * 20 19 18 38 38 H 1.09005 * 109.46813 * 300.00052 * 20 19 18 39 39 H 1.09008 * 109.47127 * 299.99484 * 21 19 18 40 40 H 1.09002 * 109.47345 * 59.99883 * 21 19 18 41 41 H 1.08995 * 109.47323 * 180.02562 * 21 19 18 42 42 H 1.09008 * 109.47130 * 180.02562 * 25 24 23 43 43 H 1.09000 * 109.47491 * 300.00065 * 25 24 23 44 44 H 1.08998 * 109.47603 * 59.99946 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3753 1.9810 -1.1777 5 1 2.9475 2.8969 -1.1656 6 6 2.0014 1.4111 -2.3894 7 7 0.9964 0.5661 -2.4355 8 14 2.9279 1.8467 -3.9519 9 1 4.0088 2.8138 -3.6332 10 1 3.5201 0.6163 -4.5355 11 1 1.9908 2.4567 -4.9292 12 6 2.1212 2.0597 1.1600 13 8 2.6112 3.1729 1.1721 14 6 1.6404 1.4530 2.4131 15 6 2.4414 0.5645 3.1369 16 6 3.8211 0.2062 2.6477 17 7 1.9702 0.0436 4.2569 18 6 0.7639 0.3472 4.6981 19 6 0.2800 -0.2770 5.9816 20 6 -0.0319 0.8233 6.9980 21 6 -0.9858 -1.0914 5.7072 22 7 -0.0309 1.1774 4.0559 23 6 0.3586 1.7549 2.9223 24 16 -0.7066 2.8701 2.0701 25 6 -2.1388 2.8441 3.1765 26 1 -0.3634 0.5737 -0.8526 27 1 -0.3632 -1.0253 -0.0706 28 1 -0.3634 0.4515 0.9232 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 0.7358 0.1682 -3.2808 32 1 4.5536 0.8681 3.1096 33 1 4.0447 -0.8265 2.9157 34 1 3.8627 0.3176 1.5643 35 1 1.0538 -0.9325 6.3812 36 1 -0.8058 1.4785 6.5982 37 1 -0.3814 0.3717 7.9265 38 1 0.8699 1.4035 7.1935 39 1 -1.7599 -0.4362 5.3074 40 1 -0.7637 -1.8753 4.9831 41 1 -1.3361 -1.5425 6.6355 42 1 -2.9141 3.5016 2.7829 43 1 -2.5260 1.8275 3.2459 44 1 -1.8393 3.1870 4.1668 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154979874.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:52 Heat of formation + Delta-G solvation = -3.081208 kcal Electronic energy + Delta-G solvation = -26663.400347 eV Core-core repulsion = 23127.792013 eV Total energy + Delta-G solvation = -3535.608334 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.34133 -40.28421 -37.09750 -36.72921 -35.36969 -33.93128 -32.64696 -31.29907 -30.13837 -29.59138 -28.04014 -27.37750 -25.70426 -24.70725 -24.04045 -21.94609 -21.01627 -19.36506 -18.92591 -18.34615 -18.21883 -16.90316 -16.44252 -16.36851 -15.89393 -15.46187 -15.18594 -15.05656 -14.94561 -14.63922 -14.56121 -14.46001 -14.28614 -13.78510 -13.65767 -13.58030 -13.23954 -13.21761 -13.07269 -12.97191 -12.85684 -12.67843 -12.32741 -12.20405 -12.13463 -12.06458 -11.88266 -11.86741 -11.67474 -11.55346 -10.92591 -10.67006 -10.45878 -10.36015 -9.72909 -8.86540 -8.31982 -5.90047 -0.40442 -0.22453 0.26244 1.15618 1.35445 1.45763 1.58591 1.83858 2.25931 2.43961 2.73290 2.94306 3.02831 3.06912 3.49763 3.77472 3.97342 4.05393 4.18720 4.19098 4.28216 4.32657 4.33135 4.47596 4.50695 4.64626 4.76014 4.80498 4.82997 4.83633 4.86892 4.94251 4.95495 5.01969 5.07676 5.25221 5.34014 5.34464 5.42243 5.43573 5.67728 5.89406 6.04229 6.48930 6.89251 7.12506 7.38832 7.95426 8.64539 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.017691 B = 0.004663 C = 0.004326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.351994 B = 6003.757325 C = 6471.273579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.133 3.867 3 N -0.422 5.422 4 C -0.346 4.346 5 H 0.077 0.923 6 C 0.010 3.990 7 N -0.866 5.866 8 Si 0.985 3.015 9 H -0.276 1.276 10 H -0.265 1.265 11 H -0.276 1.276 12 C 0.489 3.511 13 O -0.624 6.624 14 C -0.206 4.206 15 C 0.205 3.795 16 C -0.105 4.105 17 N -0.530 5.530 18 C 0.332 3.668 19 C -0.023 4.023 20 C -0.134 4.134 21 C -0.134 4.134 22 N -0.516 5.516 23 C 0.181 3.819 24 S -0.062 6.062 25 C -0.129 4.129 26 H 0.077 0.923 27 H 0.052 0.948 28 H 0.027 0.973 29 H 0.084 0.916 30 H 0.041 0.959 31 H 0.275 0.725 32 H 0.097 0.903 33 H 0.111 0.889 34 H 0.065 0.935 35 H 0.106 0.894 36 H 0.057 0.943 37 H 0.095 0.905 38 H 0.043 0.957 39 H 0.057 0.943 40 H 0.044 0.956 41 H 0.094 0.906 42 H 0.127 0.873 43 H 0.094 0.906 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.857 -5.887 13.593 15.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.010 3.990 3 N -0.137 5.137 4 C -0.473 4.473 5 H 0.095 0.905 6 C -0.194 4.194 7 N -0.503 5.503 8 Si 0.808 3.192 9 H -0.201 1.201 10 H -0.190 1.190 11 H -0.202 1.202 12 C 0.276 3.724 13 O -0.512 6.512 14 C -0.221 4.221 15 C 0.058 3.942 16 C -0.163 4.163 17 N -0.246 5.246 18 C 0.061 3.939 19 C -0.043 4.043 20 C -0.192 4.192 21 C -0.192 4.192 22 N -0.235 5.235 23 C -0.075 4.075 24 S 0.177 5.823 25 C -0.298 4.298 26 H 0.095 0.905 27 H 0.071 0.929 28 H 0.046 0.954 29 H 0.102 0.898 30 H 0.059 0.941 31 H 0.086 0.914 32 H 0.115 0.885 33 H 0.130 0.870 34 H 0.084 0.916 35 H 0.125 0.875 36 H 0.077 0.923 37 H 0.113 0.887 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.063 0.937 41 H 0.113 0.887 42 H 0.146 0.854 43 H 0.113 0.887 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.022 -5.218 13.186 15.407 hybrid contribution 0.639 0.155 -0.798 1.034 sum -5.383 -5.063 12.388 14.425 Atomic orbital electron populations 1.22071 0.95424 1.00882 1.01231 1.21319 0.95577 0.82193 0.99888 1.43793 1.53561 1.11567 1.04825 1.19649 1.33976 1.10459 0.83224 0.90522 1.25930 0.95616 0.96624 1.01201 1.70168 1.22416 1.29824 1.27933 0.85022 0.78330 0.78441 0.77374 1.20113 1.19029 1.20184 1.17501 0.85752 0.85441 0.83690 1.90592 1.51576 1.22156 1.86877 1.21258 0.96753 1.03794 1.00323 1.22064 0.96421 0.87369 0.88311 1.20881 0.89377 1.04786 1.01207 1.68165 1.15800 1.26862 1.13803 1.24041 0.85274 0.88550 0.95998 1.20175 0.99596 0.97448 0.87110 1.21766 1.01467 0.97437 0.98511 1.21762 0.95388 0.98971 1.03049 1.68538 1.35899 1.12263 1.06789 1.23741 0.93831 0.96108 0.93855 1.86920 1.13045 1.50401 1.31944 1.23583 0.96838 1.07525 1.01849 0.90453 0.92945 0.95413 0.89757 0.94100 0.91440 0.88458 0.87011 0.91585 0.87546 0.92345 0.88661 0.93812 0.92363 0.93675 0.88717 0.85436 0.88750 0.88735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.04 9.52 71.98 0.69 -5.35 16 2 C 0.13 6.12 4.83 86.38 0.42 6.54 16 3 N -0.42 -21.91 2.46 -639.40 -1.57 -23.48 16 4 C -0.35 -19.27 9.40 84.09 0.79 -18.48 16 5 H 0.08 4.64 7.31 -2.91 -0.02 4.62 16 6 C 0.01 0.51 4.92 84.95 0.42 0.93 16 7 N -0.87 -43.00 8.43 21.68 0.18 -42.82 16 8 Si 0.98 40.95 29.60 68.60 2.03 42.98 16 9 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 10 H -0.27 -10.40 7.11 99.48 0.71 -9.69 16 11 H -0.28 -11.23 7.11 99.48 0.71 -10.53 16 12 C 0.49 25.38 4.72 86.62 0.41 25.79 16 13 O -0.62 -37.28 16.72 -4.16 -0.07 -37.35 16 14 C -0.21 -9.11 3.92 -19.79 -0.08 -9.19 16 15 C 0.21 7.91 6.01 42.89 0.26 8.17 16 16 C -0.11 -3.51 9.50 71.24 0.68 -2.83 16 17 N -0.53 -18.26 10.21 -175.15 -1.79 -20.04 16 18 C 0.33 10.43 6.35 138.73 0.88 11.31 16 19 C -0.02 -0.49 3.25 -11.54 -0.04 -0.53 16 20 C -0.13 -2.43 9.08 71.98 0.65 -1.78 16 21 C -0.13 -2.44 9.08 71.98 0.65 -1.78 16 22 N -0.52 -17.48 8.64 -182.76 -1.58 -19.06 16 23 C 0.18 7.27 5.78 85.23 0.49 7.76 16 24 S -0.06 -2.37 20.89 -56.49 -1.18 -3.55 16 25 C -0.13 -3.21 9.69 113.37 1.10 -2.11 16 26 H 0.08 3.81 6.11 -2.39 -0.01 3.80 16 27 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.03 1.17 5.17 -2.39 -0.01 1.16 16 29 H 0.08 4.06 6.13 -2.39 -0.01 4.04 16 30 H 0.04 1.74 5.73 -2.39 -0.01 1.72 16 31 H 0.28 12.72 8.31 -92.71 -0.77 11.95 16 32 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 33 H 0.11 3.00 8.14 -2.38 -0.02 2.98 16 34 H 0.07 2.50 6.31 -2.39 -0.02 2.49 16 35 H 0.11 2.09 8.09 -2.39 -0.02 2.07 16 36 H 0.06 1.15 8.00 -2.39 -0.02 1.14 16 37 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.04 0.88 8.14 -2.38 -0.02 0.86 16 39 H 0.06 1.16 8.00 -2.38 -0.02 1.14 16 40 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.13 2.46 8.14 -2.39 -0.02 2.44 16 43 H 0.09 2.23 8.14 -2.40 -0.02 2.21 16 44 H 0.09 2.20 8.14 -2.40 -0.02 2.19 16 Total: -1.00 -67.62 364.90 4.35 -63.28 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: 1.01 Total: 21.60 kcal Atomic # 6 Polarization: 11.13 SS G_CDS: 7.32 Total: 18.44 kcal Atomic # 7 Polarization: -100.64 SS G_CDS: -4.76 Total: -105.40 kcal Atomic # 8 Polarization: -37.28 SS G_CDS: -0.07 Total: -37.35 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.98 kcal Atomic # 16 Polarization: -2.37 SS G_CDS: -1.18 Total: -3.55 kcal Total: -67.62 4.35 -63.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154979874.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.194 kcal (2) G-P(sol) polarization free energy of solvation -67.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds