Wall clock time and date at job start Tue Mar 31 2020 14:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 113.99645 * 2 1 4 4 C 1.52997 * 109.47034 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47651 * 64.99398 * 4 3 2 6 6 C 1.46499 * 120.00333 * 265.25028 * 5 4 3 7 7 C 1.50705 * 109.46954 * 269.99588 * 6 5 4 8 8 H 1.07993 * 119.99839 * 0.02562 * 7 6 5 9 9 C 1.37873 * 119.99769 * 179.97438 * 7 6 5 10 10 N 1.31513 * 120.00376 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 119.99797 * 180.02562 * 9 7 6 12 12 H 1.48507 * 109.47373 * 60.00151 * 11 9 7 13 13 H 1.48504 * 109.47137 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47269 * 300.00011 * 11 9 7 15 15 C 1.34781 * 119.99759 * 85.24628 * 5 4 3 16 16 O 1.21279 * 120.00105 * 184.72564 * 15 5 4 17 17 C 1.50697 * 119.99783 * 4.72326 * 15 5 4 18 18 H 1.09000 * 109.47607 * 320.84734 * 17 15 5 19 19 O 1.42904 * 109.47088 * 200.85025 * 17 15 5 20 20 C 1.50703 * 109.47013 * 80.85163 * 17 15 5 21 21 C 1.38282 * 119.97070 * 72.10225 * 20 17 15 22 22 C 1.38251 * 120.10735 * 179.72527 * 21 20 17 23 23 C 1.38162 * 120.05722 * 0.54614 * 22 21 20 24 24 C 1.38711 * 119.94045 * 359.72320 * 23 22 21 25 25 O 1.35906 * 120.05099 * 179.97438 * 24 23 22 26 26 C 1.42897 * 117.00005 * 0.02950 * 25 24 23 27 27 C 1.38122 * 119.97167 * 252.36914 * 20 17 15 28 28 H 1.09006 * 109.47551 * 60.00194 * 1 2 3 29 29 H 1.09004 * 109.47144 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47414 * 299.99876 * 1 2 3 31 31 H 1.08996 * 109.47486 * 59.99883 * 3 2 1 32 32 H 1.08999 * 109.47118 * 299.99622 * 3 2 1 33 33 H 1.09010 * 109.46765 * 304.99707 * 4 3 2 34 34 H 1.09000 * 109.47436 * 185.00074 * 4 3 2 35 35 H 1.08993 * 109.46958 * 29.99500 * 6 5 4 36 36 H 1.09005 * 109.47180 * 149.99753 * 6 5 4 37 37 H 0.96998 * 120.00144 * 179.97438 * 10 9 7 38 38 H 0.96700 * 113.99972 * 299.99738 * 19 17 15 39 39 H 1.08000 * 119.95054 * 359.97438 * 21 20 17 40 40 H 1.08002 * 119.97083 * 180.24957 * 22 21 20 41 41 H 1.07998 * 120.02809 * 179.70927 * 23 22 21 42 42 H 1.08999 * 109.47241 * 59.99667 * 26 25 24 43 43 H 1.09002 * 109.46658 * 179.97438 * 26 25 24 44 44 H 1.08996 * 109.47103 * 299.99352 * 26 25 24 45 45 H 1.08004 * 120.02730 * 0.02799 * 27 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1848 -0.0006 5 7 3.9757 0.5644 -1.2526 6 6 4.2056 -0.8812 -1.3127 7 6 5.6396 -1.1770 -0.9558 8 1 6.3121 -0.3691 -0.7085 9 6 6.0924 -2.4792 -0.9439 10 7 5.2730 -3.4632 -1.2436 11 14 7.8696 -2.8459 -0.5008 12 1 8.1483 -2.3566 0.8734 13 1 8.1024 -4.3114 -0.5606 14 1 8.7709 -2.1614 -1.4622 15 6 4.1692 1.3237 -2.3492 16 8 4.4503 0.8010 -3.4069 17 6 4.0363 2.8222 -2.2612 18 1 3.2007 3.0752 -1.6086 19 8 3.8009 3.3570 -3.5653 20 6 5.3069 3.4071 -1.7002 21 6 6.4536 3.4367 -2.4724 22 6 7.6192 3.9778 -1.9627 23 6 7.6440 4.4801 -0.6759 24 6 6.4965 4.4465 0.1027 25 8 6.5185 4.9395 1.3690 26 6 7.7576 5.4784 1.8339 27 6 5.3264 3.9081 -0.4132 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.6885 1.8464 0.8899 32 1 1.6885 1.8464 -0.8900 33 1 3.8513 0.5683 0.8410 34 1 3.9784 2.1766 0.0889 35 1 3.5444 -1.3838 -0.6069 36 1 4.0008 -1.2400 -2.3214 37 1 5.5917 -4.3793 -1.2356 38 1 4.5059 3.1700 -4.2002 39 1 6.4375 3.0402 -3.4769 40 1 8.5124 4.0035 -2.5692 41 1 8.5561 4.8984 -0.2765 42 1 8.0574 6.3066 1.1919 43 1 7.6371 5.8368 2.8563 44 1 8.5234 4.7031 1.8082 45 1 4.4318 3.8804 0.1912 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000163247874.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:07 Heat of formation + Delta-G solvation = -131.448409 kcal Electronic energy + Delta-G solvation = -28695.727593 eV Core-core repulsion = 24679.507217 eV Total energy + Delta-G solvation = -4016.220375 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.52806 -39.44292 -37.78357 -37.31927 -35.96815 -34.82890 -32.72920 -31.63614 -30.31387 -29.61910 -27.95044 -27.33352 -26.17840 -25.74607 -22.90293 -22.74504 -22.55589 -21.27468 -18.97840 -18.30676 -17.21442 -16.67376 -16.40647 -16.18062 -16.06537 -15.84283 -15.78580 -15.49730 -15.11936 -14.74078 -14.55493 -13.99094 -13.75074 -13.67319 -13.29990 -13.20452 -12.80905 -12.51277 -12.34937 -12.21305 -11.86274 -11.79366 -11.65213 -11.52462 -11.22169 -11.18488 -11.09264 -10.90451 -10.81940 -10.55131 -10.37819 -10.11001 -9.59519 -9.43675 -9.21278 -8.57079 -8.35566 -8.21555 -7.63904 -5.96742 -4.01068 1.20566 1.43365 3.06681 3.28620 3.34614 3.38661 3.41857 3.68733 3.85612 4.04060 4.48561 4.58174 4.66776 4.70484 4.92405 4.92929 4.98391 4.98752 5.13875 5.26867 5.28798 5.32223 5.37045 5.39356 5.44211 5.49762 5.55985 5.60794 5.65220 5.66105 5.85925 5.92943 6.19752 6.24616 6.38789 6.51197 6.65067 7.18163 7.29923 7.39740 7.55103 7.60216 7.62785 8.00420 8.32067 8.42259 8.89210 9.06895 9.62616 11.11298 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.008245 B = 0.005455 C = 0.004286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3395.079207 B = 5131.450132 C = 6531.782670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.371 6.371 3 C 0.040 3.960 4 C 0.099 3.901 5 N -0.578 5.578 6 C 0.249 3.751 7 C -0.526 4.526 8 H 0.055 0.945 9 C 0.062 3.938 10 N -0.893 5.893 11 Si 0.894 3.106 12 H -0.278 1.278 13 H -0.286 1.286 14 H -0.278 1.278 15 C 0.486 3.514 16 O -0.534 6.534 17 C 0.128 3.872 18 H 0.120 0.880 19 O -0.536 6.536 20 C -0.068 4.068 21 C -0.134 4.134 22 C -0.074 4.074 23 C -0.205 4.205 24 C 0.128 3.872 25 O -0.317 6.317 26 C 0.028 3.972 27 C -0.139 4.139 28 H 0.037 0.963 29 H 0.084 0.916 30 H 0.036 0.964 31 H 0.055 0.945 32 H 0.046 0.954 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.044 0.956 36 H 0.041 0.959 37 H 0.263 0.737 38 H 0.384 0.616 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.127 0.873 42 H 0.054 0.946 43 H 0.099 0.901 44 H 0.056 0.944 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.035 18.388 5.138 19.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.289 6.289 3 C -0.038 4.038 4 C -0.025 4.025 5 N -0.309 5.309 6 C 0.130 3.870 7 C -0.565 4.565 8 H 0.073 0.927 9 C -0.140 4.140 10 N -0.532 5.532 11 Si 0.722 3.278 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.203 1.203 15 C 0.271 3.729 16 O -0.412 6.412 17 C 0.065 3.935 18 H 0.138 0.862 19 O -0.342 6.342 20 C -0.069 4.069 21 C -0.152 4.152 22 C -0.093 4.093 23 C -0.224 4.224 24 C 0.083 3.917 25 O -0.231 6.231 26 C -0.067 4.067 27 C -0.158 4.158 28 H 0.055 0.945 29 H 0.103 0.897 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.115 0.885 34 H 0.103 0.897 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.072 0.928 38 H 0.233 0.767 39 H 0.145 0.855 40 H 0.145 0.855 41 H 0.145 0.855 42 H 0.072 0.928 43 H 0.117 0.883 44 H 0.075 0.925 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.482 17.922 4.980 18.660 hybrid contribution 1.620 -0.246 0.144 1.645 sum 0.139 17.677 5.124 18.405 Atomic orbital electron populations 1.22714 0.81922 1.02645 0.99237 1.88092 1.18834 1.26806 1.95154 1.23168 0.95198 0.85651 0.99747 1.21784 0.91242 0.99717 0.89762 1.48121 1.63698 1.10958 1.08120 1.19338 0.96157 0.72404 0.99077 1.21413 0.95918 0.92348 1.46796 0.92678 1.24898 0.97584 0.96095 0.95374 1.69934 1.35058 0.99518 1.48641 0.86622 0.85225 0.77081 0.78844 1.20318 1.21193 1.20320 1.20828 0.78564 0.88641 0.84896 1.90667 1.48396 1.73740 1.28369 1.20846 0.95418 0.91106 0.86126 0.86204 1.86545 1.50051 1.77737 1.19862 1.19966 0.95605 0.97404 0.93934 1.20873 0.92370 1.01127 1.00873 1.20884 0.97802 0.95915 0.94651 1.21231 0.97775 1.07196 0.96192 1.18862 0.94163 0.94731 0.83952 1.86057 1.35288 1.74530 1.27182 1.23042 0.85333 0.98052 1.00289 1.20166 0.97228 1.03067 0.95331 0.94487 0.89734 0.94586 0.92722 0.93611 0.88510 0.89717 0.93783 0.94062 0.92768 0.76669 0.85491 0.85503 0.85486 0.92779 0.88300 0.92548 0.84774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.37 -6.46 10.05 -35.23 -0.35 -6.81 16 3 C 0.04 0.59 6.02 37.16 0.22 0.81 16 4 C 0.10 1.68 5.42 -4.05 -0.02 1.66 16 5 N -0.58 -12.55 2.41 -175.06 -0.42 -12.97 16 6 C 0.25 6.73 5.07 -5.19 -0.03 6.71 16 7 C -0.53 -15.18 9.39 -34.44 -0.32 -15.51 16 8 H 0.05 1.59 7.81 -52.49 -0.41 1.18 16 9 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 10 N -0.89 -27.10 13.29 55.43 0.74 -26.36 16 11 Si 0.89 22.24 29.54 -169.99 -5.02 17.22 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 15 C 0.49 10.29 6.76 -10.98 -0.07 10.21 16 16 O -0.53 -13.42 15.89 -13.43 -0.21 -13.63 16 17 C 0.13 2.07 2.88 -29.03 -0.08 1.99 16 18 H 0.12 1.67 5.66 -51.93 -0.29 1.38 16 19 O -0.54 -8.51 13.05 -54.22 -0.71 -9.21 16 20 C -0.07 -1.03 4.77 -104.65 -0.50 -1.53 16 21 C -0.13 -1.98 9.18 -39.56 -0.36 -2.34 16 22 C -0.07 -0.96 10.04 -39.60 -0.40 -1.36 16 23 C -0.21 -2.53 9.04 -39.43 -0.36 -2.88 16 24 C 0.13 1.70 6.69 -39.22 -0.26 1.44 16 25 O -0.32 -3.83 10.50 -19.44 -0.20 -4.04 16 26 C 0.03 0.22 9.81 101.05 0.99 1.22 16 27 C -0.14 -1.93 8.26 -39.44 -0.33 -2.26 16 28 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.64 7.16 -51.93 -0.37 0.27 16 33 H 0.10 1.74 8.04 -51.92 -0.42 1.33 16 34 H 0.08 1.21 3.43 -51.93 -0.18 1.03 16 35 H 0.04 1.24 7.57 -51.93 -0.39 0.85 16 36 H 0.04 1.27 7.36 -51.93 -0.38 0.88 16 37 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 38 H 0.38 5.43 7.37 45.56 0.34 5.77 16 39 H 0.13 1.81 7.13 -52.49 -0.37 1.44 16 40 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 41 H 0.13 1.22 6.30 -52.49 -0.33 0.89 16 42 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 43 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.06 0.43 7.66 -51.93 -0.40 0.04 16 45 H 0.13 1.59 6.62 -52.48 -0.35 1.24 16 LS Contribution 372.70 15.07 5.62 5.62 Total: -1.00 -36.19 372.70 -6.70 -42.89 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -5.63 Total: 5.90 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -0.50 Total: 1.41 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 0.31 Total: -39.34 kcal Atomic # 8 Polarization: -32.22 SS G_CDS: -1.48 Total: -33.69 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.19 -6.70 -42.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163247874.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.558 kcal (2) G-P(sol) polarization free energy of solvation -36.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds