Wall clock time and date at job start Tue Mar 31 2020 14:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 113.99645 * 2 1 4 4 C 1.52997 * 109.47034 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47651 * 64.99398 * 4 3 2 6 6 C 1.46499 * 120.00333 * 265.25028 * 5 4 3 7 7 C 1.50705 * 109.46954 * 269.99588 * 6 5 4 8 8 H 1.07993 * 119.99839 * 0.02562 * 7 6 5 9 9 C 1.37873 * 119.99769 * 179.97438 * 7 6 5 10 10 N 1.31513 * 120.00376 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 119.99797 * 180.02562 * 9 7 6 12 12 H 1.48507 * 109.47373 * 60.00151 * 11 9 7 13 13 H 1.48504 * 109.47137 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47269 * 300.00011 * 11 9 7 15 15 C 1.34781 * 119.99759 * 85.24628 * 5 4 3 16 16 O 1.21279 * 120.00105 * 184.72564 * 15 5 4 17 17 C 1.50697 * 119.99783 * 4.72326 * 15 5 4 18 18 H 1.09000 * 109.47607 * 320.84734 * 17 15 5 19 19 O 1.42904 * 109.47088 * 200.85025 * 17 15 5 20 20 C 1.50703 * 109.47013 * 80.85163 * 17 15 5 21 21 C 1.38282 * 119.97070 * 72.10225 * 20 17 15 22 22 C 1.38251 * 120.10735 * 179.72527 * 21 20 17 23 23 C 1.38162 * 120.05722 * 0.54614 * 22 21 20 24 24 C 1.38711 * 119.94045 * 359.72320 * 23 22 21 25 25 O 1.35906 * 120.05099 * 179.97438 * 24 23 22 26 26 C 1.42897 * 117.00005 * 0.02950 * 25 24 23 27 27 C 1.38122 * 119.97167 * 252.36914 * 20 17 15 28 28 H 1.09006 * 109.47551 * 60.00194 * 1 2 3 29 29 H 1.09004 * 109.47144 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47414 * 299.99876 * 1 2 3 31 31 H 1.08996 * 109.47486 * 59.99883 * 3 2 1 32 32 H 1.08999 * 109.47118 * 299.99622 * 3 2 1 33 33 H 1.09010 * 109.46765 * 304.99707 * 4 3 2 34 34 H 1.09000 * 109.47436 * 185.00074 * 4 3 2 35 35 H 1.08993 * 109.46958 * 29.99500 * 6 5 4 36 36 H 1.09005 * 109.47180 * 149.99753 * 6 5 4 37 37 H 0.96998 * 120.00144 * 179.97438 * 10 9 7 38 38 H 0.96700 * 113.99972 * 299.99738 * 19 17 15 39 39 H 1.08000 * 119.95054 * 359.97438 * 21 20 17 40 40 H 1.08002 * 119.97083 * 180.24957 * 22 21 20 41 41 H 1.07998 * 120.02809 * 179.70927 * 23 22 21 42 42 H 1.08999 * 109.47241 * 59.99667 * 26 25 24 43 43 H 1.09002 * 109.46658 * 179.97438 * 26 25 24 44 44 H 1.08996 * 109.47103 * 299.99352 * 26 25 24 45 45 H 1.08004 * 120.02730 * 0.02799 * 27 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1848 -0.0006 5 7 3.9757 0.5644 -1.2526 6 6 4.2056 -0.8812 -1.3127 7 6 5.6396 -1.1770 -0.9558 8 1 6.3121 -0.3691 -0.7085 9 6 6.0924 -2.4792 -0.9439 10 7 5.2730 -3.4632 -1.2436 11 14 7.8696 -2.8459 -0.5008 12 1 8.1483 -2.3566 0.8734 13 1 8.1024 -4.3114 -0.5606 14 1 8.7709 -2.1614 -1.4622 15 6 4.1692 1.3237 -2.3492 16 8 4.4503 0.8010 -3.4069 17 6 4.0363 2.8222 -2.2612 18 1 3.2007 3.0752 -1.6086 19 8 3.8009 3.3570 -3.5653 20 6 5.3069 3.4071 -1.7002 21 6 6.4536 3.4367 -2.4724 22 6 7.6192 3.9778 -1.9627 23 6 7.6440 4.4801 -0.6759 24 6 6.4965 4.4465 0.1027 25 8 6.5185 4.9395 1.3690 26 6 7.7576 5.4784 1.8339 27 6 5.3264 3.9081 -0.4132 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.6885 1.8464 0.8899 32 1 1.6885 1.8464 -0.8900 33 1 3.8513 0.5683 0.8410 34 1 3.9784 2.1766 0.0889 35 1 3.5444 -1.3838 -0.6069 36 1 4.0008 -1.2400 -2.3214 37 1 5.5917 -4.3793 -1.2356 38 1 4.5059 3.1700 -4.2002 39 1 6.4375 3.0402 -3.4769 40 1 8.5124 4.0035 -2.5692 41 1 8.5561 4.8984 -0.2765 42 1 8.0574 6.3066 1.1919 43 1 7.6371 5.8368 2.8563 44 1 8.5234 4.7031 1.8082 45 1 4.4318 3.8804 0.1912 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163247874.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:07 Heat of formation + Delta-G solvation = -157.925911 kcal Electronic energy + Delta-G solvation = -28696.875743 eV Core-core repulsion = 24679.507217 eV Total energy + Delta-G solvation = -4017.368526 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.74482 -40.68539 -38.96769 -38.54996 -37.25522 -36.48842 -34.84527 -32.81496 -31.29842 -31.15569 -29.49190 -28.27169 -27.46911 -27.09228 -24.75265 -24.05106 -23.67713 -22.41790 -20.53792 -19.32022 -18.67558 -18.57792 -17.99408 -17.22475 -17.19165 -16.96051 -16.88226 -16.62603 -16.53156 -16.26614 -15.97550 -15.38973 -15.20500 -14.88750 -14.65654 -14.34396 -14.26074 -13.75532 -13.68352 -13.40526 -13.34003 -13.06831 -12.97725 -12.84169 -12.77348 -12.66942 -12.55938 -12.25065 -12.19071 -12.00177 -11.95745 -11.71814 -11.62632 -10.66229 -10.63080 -10.54905 -9.84300 -9.46717 -9.21103 -8.19943 -6.34880 0.15705 0.41184 1.34511 1.39041 1.46365 1.62409 2.16173 2.34245 2.42427 2.66347 2.91950 3.09197 3.35426 3.47731 3.56273 3.75788 3.94978 4.08562 4.12787 4.22379 4.24535 4.27658 4.38843 4.43648 4.45713 4.51350 4.53541 4.59034 4.63574 4.77103 4.85946 4.87263 4.95957 5.12493 5.22097 5.26502 5.36683 5.47301 5.54935 5.66623 5.82925 6.08265 6.29845 6.37055 6.41957 6.68704 6.76018 7.22386 7.38541 8.87387 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.008245 B = 0.005455 C = 0.004286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3395.079207 B = 5131.450132 C = 6531.782670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.416 6.416 3 C 0.041 3.959 4 C 0.095 3.905 5 N -0.583 5.583 6 C 0.271 3.729 7 C -0.541 4.541 8 H 0.052 0.948 9 C 0.008 3.992 10 N -0.928 5.928 11 Si 0.965 3.035 12 H -0.261 1.261 13 H -0.278 1.278 14 H -0.276 1.276 15 C 0.477 3.523 16 O -0.587 6.587 17 C 0.146 3.854 18 H 0.147 0.853 19 O -0.539 6.539 20 C -0.085 4.085 21 C -0.158 4.158 22 C -0.079 4.079 23 C -0.202 4.202 24 C 0.122 3.878 25 O -0.329 6.329 26 C 0.017 3.983 27 C -0.148 4.148 28 H 0.043 0.957 29 H 0.082 0.918 30 H 0.065 0.935 31 H 0.099 0.901 32 H 0.053 0.947 33 H 0.082 0.918 34 H 0.115 0.885 35 H 0.025 0.975 36 H -0.009 1.009 37 H 0.266 0.734 38 H 0.389 0.611 39 H 0.120 0.880 40 H 0.150 0.850 41 H 0.156 0.844 42 H 0.069 0.931 43 H 0.121 0.879 44 H 0.060 0.940 45 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.151 20.816 7.244 22.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.336 6.336 3 C -0.036 4.036 4 C -0.028 4.028 5 N -0.313 5.313 6 C 0.150 3.850 7 C -0.579 4.579 8 H 0.071 0.929 9 C -0.191 4.191 10 N -0.567 5.567 11 Si 0.789 3.211 12 H -0.185 1.185 13 H -0.203 1.203 14 H -0.201 1.201 15 C 0.265 3.735 16 O -0.468 6.468 17 C 0.084 3.916 18 H 0.164 0.836 19 O -0.345 6.345 20 C -0.086 4.086 21 C -0.176 4.176 22 C -0.097 4.097 23 C -0.221 4.221 24 C 0.077 3.923 25 O -0.243 6.243 26 C -0.077 4.077 27 C -0.166 4.166 28 H 0.062 0.938 29 H 0.101 0.899 30 H 0.083 0.917 31 H 0.117 0.883 32 H 0.071 0.929 33 H 0.100 0.900 34 H 0.133 0.867 35 H 0.043 0.957 36 H 0.009 0.991 37 H 0.075 0.925 38 H 0.240 0.760 39 H 0.138 0.862 40 H 0.167 0.833 41 H 0.174 0.826 42 H 0.088 0.912 43 H 0.139 0.861 44 H 0.078 0.922 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -0.315 20.399 7.122 21.609 hybrid contribution 1.253 -0.950 -0.475 1.643 sum 0.938 19.450 6.648 20.576 Atomic orbital electron populations 1.22883 0.79843 1.03222 1.00952 1.88033 1.21327 1.28663 1.95546 1.23243 0.93056 0.85179 1.02147 1.22090 0.93498 1.00335 0.86856 1.48065 1.63851 1.09057 1.10332 1.18673 0.95183 0.75864 0.95306 1.21652 0.96623 0.92648 1.46999 0.92944 1.25849 1.02416 0.95820 0.94989 1.70072 1.37335 0.99996 1.49323 0.85513 0.79158 0.77252 0.79176 1.18548 1.20274 1.20105 1.21829 0.77022 0.90925 0.83733 1.90626 1.50578 1.75322 1.30259 1.20743 0.97313 0.86795 0.86771 0.83603 1.86518 1.50621 1.77249 1.20140 1.19872 0.95017 0.98824 0.94868 1.21037 0.93376 1.02209 1.00988 1.21182 0.97895 0.95237 0.95340 1.21589 0.98680 1.06147 0.95663 1.19009 0.94196 0.94412 0.84684 1.86047 1.37454 1.74443 1.26328 1.23371 0.84032 0.98551 1.01771 1.20357 0.98495 1.02948 0.94849 0.93795 0.89927 0.91687 0.88328 0.92870 0.89976 0.86713 0.95709 0.99083 0.92483 0.76014 0.86237 0.83271 0.82620 0.91231 0.86114 0.92181 0.82950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 11.01 113.37 1.25 1.92 16 2 O -0.42 -14.49 10.05 -148.98 -1.50 -15.98 16 3 C 0.04 1.13 6.02 71.98 0.43 1.56 16 4 C 0.09 3.16 5.42 86.38 0.47 3.62 16 5 N -0.58 -26.11 2.41 -826.15 -1.99 -28.10 16 6 C 0.27 15.48 5.07 85.63 0.43 15.91 16 7 C -0.54 -32.23 9.39 25.60 0.24 -31.98 16 8 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 9 C 0.01 0.49 5.46 84.65 0.46 0.95 16 10 N -0.93 -58.05 13.29 21.45 0.28 -57.77 16 11 Si 0.96 45.90 29.54 68.60 2.03 47.93 16 12 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 13 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 14 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 15 C 0.48 20.84 6.76 87.66 0.59 21.43 16 16 O -0.59 -31.12 15.89 15.13 0.24 -30.88 16 17 C 0.15 4.66 2.88 29.10 0.08 4.75 16 18 H 0.15 3.79 5.66 -2.39 -0.01 3.78 16 19 O -0.54 -17.02 13.05 -130.83 -1.71 -18.73 16 20 C -0.08 -2.49 4.77 -19.88 -0.09 -2.58 16 21 C -0.16 -4.59 9.18 22.28 0.20 -4.38 16 22 C -0.08 -1.89 10.04 22.25 0.22 -1.67 16 23 C -0.20 -4.41 9.04 22.36 0.20 -4.21 16 24 C 0.12 2.94 6.69 22.50 0.15 3.09 16 25 O -0.33 -6.95 10.50 -92.49 -0.97 -7.92 16 26 C 0.02 0.21 9.81 113.37 1.11 1.32 16 27 C -0.15 -3.79 8.26 22.36 0.18 -3.60 16 28 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 29 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.05 1.38 7.16 -2.39 -0.02 1.37 16 33 H 0.08 2.97 8.04 -2.38 -0.02 2.95 16 34 H 0.12 3.07 3.43 -2.39 -0.01 3.06 16 35 H 0.02 1.49 7.57 -2.39 -0.02 1.47 16 36 H -0.01 -0.59 7.36 -2.38 -0.02 -0.61 16 37 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 38 H 0.39 11.35 7.37 -74.06 -0.55 10.80 16 39 H 0.12 3.53 7.13 -2.91 -0.02 3.50 16 40 H 0.15 2.79 8.06 -2.91 -0.02 2.76 16 41 H 0.16 2.39 6.30 -2.91 -0.02 2.37 16 42 H 0.07 0.66 7.66 -2.39 -0.02 0.64 16 43 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.06 0.72 7.66 -2.39 -0.02 0.70 16 45 H 0.15 3.15 6.62 -2.91 -0.02 3.13 16 Total: -1.00 -82.53 372.70 2.80 -79.73 By element: Atomic # 1 Polarization: 25.12 SS G_CDS: 0.47 Total: 25.60 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: 5.95 Total: 6.13 kcal Atomic # 7 Polarization: -84.16 SS G_CDS: -1.71 Total: -85.87 kcal Atomic # 8 Polarization: -69.58 SS G_CDS: -3.93 Total: -73.51 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -82.53 2.80 -79.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163247874.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.200 kcal (2) G-P(sol) polarization free energy of solvation -82.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds