Wall clock time and date at job start Tue Mar 31 2020 14:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35798 * 117.00505 * 2 1 4 4 C 1.38834 * 119.92632 * 0.02562 * 3 2 1 5 5 C 1.37794 * 120.15124 * 180.02562 * 4 3 2 6 6 C 1.39701 * 120.00309 * 0.02562 * 5 4 3 7 7 C 1.47609 * 120.06931 * 179.97438 * 6 5 4 8 8 O 1.21587 * 119.99550 * 180.02562 * 7 6 5 9 9 N 1.34778 * 120.00096 * 359.97438 * 7 6 5 10 10 C 1.46496 * 119.99947 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.47181 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47133 * 179.97438 * 11 10 9 13 13 C 1.50692 * 109.47205 * 179.97438 * 12 11 10 14 14 H 1.08002 * 120.00153 * 0.02562 * 13 12 11 15 15 C 1.37882 * 120.00286 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99880 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99883 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47228 * 90.00426 * 17 15 13 19 19 H 1.48510 * 109.46911 * 209.99691 * 17 15 13 20 20 H 1.48490 * 109.47585 * 329.99805 * 17 15 13 21 21 C 1.39730 * 119.85520 * 359.72272 * 6 5 4 22 22 C 1.38136 * 119.85280 * 0.52818 * 21 6 5 23 23 O 1.36007 * 120.00514 * 179.76864 * 22 21 6 24 24 C 1.42903 * 116.99577 * 359.72811 * 23 22 21 25 25 C 1.53000 * 109.46726 * 179.97438 * 24 23 22 26 26 O 1.42899 * 109.47405 * 64.99720 * 25 24 23 27 27 H 1.09000 * 109.47087 * 59.99529 * 1 2 3 28 28 H 1.08999 * 109.47623 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46795 * 300.00179 * 1 2 3 30 30 H 1.08005 * 119.92561 * 0.02562 * 4 3 2 31 31 H 1.08001 * 119.99701 * 180.02562 * 5 4 3 32 32 H 0.96997 * 119.99895 * 0.02562 * 9 7 6 33 33 H 1.09004 * 109.46999 * 300.00289 * 10 9 7 34 34 H 1.08995 * 109.47319 * 59.99668 * 10 9 7 35 35 H 1.08991 * 109.47094 * 299.99807 * 11 10 9 36 36 H 1.09003 * 109.46654 * 59.99985 * 11 10 9 37 37 H 1.09004 * 109.47429 * 300.00392 * 12 11 10 38 38 H 1.09008 * 109.46854 * 60.00184 * 12 11 10 39 39 H 0.96997 * 120.00239 * 180.02562 * 16 15 13 40 40 H 1.08002 * 120.07045 * 180.29621 * 21 6 5 41 41 H 1.09002 * 109.47382 * 59.99685 * 24 23 22 42 42 H 1.09001 * 109.46938 * 299.99671 * 24 23 22 43 43 H 1.09002 * 109.46642 * 184.99995 * 25 24 23 44 44 H 1.09002 * 109.47069 * 304.99524 * 25 24 23 45 45 H 0.96699 * 114.00112 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2099 0.0000 4 6 1.2881 2.3734 0.0005 5 6 1.9089 3.6035 0.0000 6 6 3.3037 3.6820 -0.0016 7 6 3.9703 4.9990 -0.0028 8 8 5.1843 5.0658 -0.0046 9 7 3.2332 6.1274 -0.0028 10 6 3.8949 7.4345 -0.0045 11 6 2.8382 8.5410 -0.0034 12 6 3.5292 9.9060 -0.0046 13 6 2.4885 10.9959 -0.0042 14 1 1.4391 10.7405 -0.0028 15 6 2.8758 12.3192 -0.0056 16 7 4.1537 12.6302 -0.0078 17 14 1.5857 13.6700 -0.0044 18 1 1.2460 14.0289 1.3959 19 1 2.1196 14.8651 -0.7060 20 1 0.3659 13.1903 -0.7022 21 6 4.0663 2.5112 0.0032 22 6 3.4378 1.2812 -0.0016 23 8 4.1771 0.1396 -0.0017 24 6 5.5984 0.2873 -0.0028 25 6 6.2547 -1.0949 -0.0021 26 8 5.9438 -1.7705 -1.2223 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 0.2096 2.3141 0.0014 31 1 1.3172 4.5070 0.0008 32 1 2.2647 6.0741 -0.0016 33 1 4.5184 7.5272 0.8848 34 1 4.5164 7.5260 -0.8951 35 1 2.2144 8.4484 -0.8924 36 1 2.2170 8.4493 0.8876 37 1 4.1529 9.9984 0.8846 38 1 4.1506 9.9979 -0.8954 39 1 4.4262 13.5611 -0.0084 40 1 5.1449 2.5679 0.0068 41 1 5.9075 0.8363 0.8867 42 1 5.9060 0.8355 -0.8933 43 1 7.3354 -0.9838 0.0866 44 1 5.8787 -1.6752 0.8405 45 1 6.3277 -2.6553 -1.2909 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170905531.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:12 Heat of formation + Delta-G solvation = -145.592457 kcal Electronic energy + Delta-G solvation = -26155.223154 eV Core-core repulsion = 22138.389447 eV Total energy + Delta-G solvation = -4016.833707 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.98998 -39.46928 -38.97033 -37.21598 -36.54003 -35.44230 -33.35884 -31.60424 -30.94644 -30.67458 -29.42591 -27.84942 -26.57039 -24.18640 -23.65696 -22.77667 -21.66279 -20.76753 -20.23224 -18.99522 -18.07887 -17.75393 -16.98779 -16.79127 -16.33285 -16.23976 -15.56890 -15.36638 -15.29147 -15.11595 -14.83163 -14.57766 -14.46230 -13.92001 -13.83335 -13.71091 -13.14912 -12.86252 -12.63147 -12.30097 -12.17253 -11.84937 -11.77718 -11.61026 -11.45749 -11.38658 -11.19226 -10.91079 -10.74154 -10.60962 -10.48106 -9.98235 -9.88020 -9.41168 -9.13022 -9.09269 -8.81241 -8.38027 -8.12125 -6.02592 -4.05719 0.66464 1.03264 2.80538 2.82220 2.89798 3.30152 3.32967 3.36822 3.39843 3.68146 3.77590 4.40278 4.43391 4.51461 4.55686 4.71098 4.73980 4.76871 4.82078 4.90604 4.92577 5.01172 5.12622 5.16596 5.27636 5.33162 5.36010 5.60394 5.76605 5.78051 5.88313 6.04207 6.14690 6.24483 6.45522 6.58436 6.71421 6.81645 6.98654 7.18836 7.25111 7.62574 7.67700 7.75103 7.96051 8.33210 8.38093 9.00892 9.58424 11.08678 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.019988 B = 0.002008 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.532417 B =13937.418717 C =15233.463074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.303 6.303 3 C 0.122 3.878 4 C -0.181 4.181 5 C -0.080 4.080 6 C -0.128 4.128 7 C 0.555 3.445 8 O -0.543 6.543 9 N -0.719 5.719 10 C 0.116 3.884 11 C -0.121 4.121 12 C 0.024 3.976 13 C -0.522 4.522 14 H 0.055 0.945 15 C 0.056 3.944 16 N -0.893 5.893 17 Si 0.893 3.107 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.274 1.274 21 C -0.117 4.117 22 C 0.093 3.907 23 O -0.295 6.295 24 C 0.053 3.947 25 C 0.080 3.920 26 O -0.566 6.566 27 H 0.057 0.943 28 H 0.101 0.899 29 H 0.057 0.943 30 H 0.142 0.858 31 H 0.134 0.866 32 H 0.398 0.602 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.261 0.739 40 H 0.148 0.852 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.069 0.931 44 H 0.058 0.942 45 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.495 -30.782 0.978 30.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.215 6.215 3 C 0.076 3.924 4 C -0.200 4.200 5 C -0.099 4.099 6 C -0.131 4.131 7 C 0.341 3.659 8 O -0.422 6.422 9 N -0.370 5.370 10 C -0.006 4.006 11 C -0.159 4.159 12 C -0.014 4.014 13 C -0.561 4.561 14 H 0.074 0.926 15 C -0.145 4.145 16 N -0.532 5.532 17 Si 0.721 3.279 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.137 4.137 22 C 0.048 3.952 23 O -0.209 6.209 24 C -0.022 4.022 25 C 0.002 3.998 26 O -0.371 6.371 27 H 0.076 0.924 28 H 0.119 0.881 29 H 0.075 0.925 30 H 0.160 0.840 31 H 0.152 0.848 32 H 0.233 0.767 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.038 0.962 38 H 0.038 0.962 39 H 0.071 0.929 40 H 0.166 0.834 41 H 0.098 0.902 42 H 0.091 0.909 43 H 0.087 0.913 44 H 0.076 0.924 45 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -2.798 -30.384 0.858 30.525 hybrid contribution -0.913 0.698 0.169 1.162 sum -3.712 -29.686 1.027 29.935 Atomic orbital electron populations 1.23128 0.78294 1.04183 1.01498 1.86156 1.21245 1.25829 1.88309 1.18464 0.89093 0.85319 0.99530 1.20994 1.00239 0.91082 1.07668 1.21049 0.93237 0.97663 0.97973 1.19720 0.93413 0.93365 1.06615 1.18112 0.86962 0.83934 0.76845 1.90766 1.13545 1.87553 1.50309 1.46124 1.10250 1.06396 1.74250 1.21689 0.96548 0.80203 1.02189 1.21898 0.97192 0.95927 1.00914 1.19031 0.95908 0.88766 0.97698 1.21198 0.92959 0.90960 1.50961 0.92639 1.25038 0.95281 0.98911 0.95289 1.69962 1.14601 1.18151 1.50520 0.86575 0.81685 0.81527 0.78080 1.20671 1.21206 1.19904 1.21146 1.01165 0.89649 1.01698 1.18042 0.88237 0.85995 1.02943 1.86217 1.18155 1.27548 1.89003 1.22950 0.79068 0.97561 1.02606 1.22179 0.97890 0.92167 0.87545 1.86582 1.78071 1.33747 1.38725 0.92419 0.88085 0.92455 0.84045 0.84822 0.76745 0.91569 0.91556 0.92668 0.92682 0.96244 0.96229 0.92918 0.83420 0.90233 0.90890 0.91268 0.92400 0.77269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 101.05 0.99 1.14 16 2 O -0.30 -3.26 10.26 -33.76 -0.35 -3.60 16 3 C 0.12 1.39 6.71 -38.93 -0.26 1.13 16 4 C -0.18 -1.70 9.01 -39.52 -0.36 -2.06 16 5 C -0.08 -0.82 9.53 -39.20 -0.37 -1.20 16 6 C -0.13 -1.65 5.87 -104.97 -0.62 -2.27 16 7 C 0.55 8.73 7.76 -12.44 -0.10 8.63 16 8 O -0.54 -10.43 16.34 5.29 0.09 -10.34 16 9 N -0.72 -10.58 5.51 -61.33 -0.34 -10.92 16 10 C 0.12 2.05 5.67 -4.04 -0.02 2.03 16 11 C -0.12 -2.35 5.27 -26.73 -0.14 -2.49 16 12 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 13 C -0.52 -14.53 9.11 -34.44 -0.31 -14.85 16 14 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 16 N -0.89 -26.77 13.29 55.43 0.74 -26.03 16 17 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 21 C -0.12 -1.48 8.58 -39.06 -0.33 -1.81 16 22 C 0.09 1.16 6.69 -39.19 -0.26 0.90 16 23 O -0.30 -3.63 9.88 -40.84 -0.40 -4.04 16 24 C 0.05 0.49 5.12 37.16 0.19 0.68 16 25 C 0.08 0.55 7.43 37.16 0.28 0.83 16 26 O -0.57 -4.78 13.62 -40.09 -0.55 -5.33 16 27 H 0.06 0.29 7.65 -51.93 -0.40 -0.11 16 28 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.28 7.65 -51.93 -0.40 -0.12 16 30 H 0.14 0.91 6.27 -52.48 -0.33 0.58 16 31 H 0.13 1.06 6.39 -52.49 -0.34 0.73 16 32 H 0.40 4.65 6.49 -40.82 -0.26 4.39 16 33 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.02 0.52 8.14 -51.92 -0.42 0.10 16 39 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.15 1.82 5.87 -52.49 -0.31 1.51 16 41 H 0.08 0.60 7.65 -51.93 -0.40 0.20 16 42 H 0.07 0.69 7.67 -51.93 -0.40 0.30 16 43 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.38 1.28 9.12 45.56 0.42 1.70 16 LS Contribution 380.85 15.07 5.74 5.74 Total: -1.00 -36.63 380.85 -7.41 -44.04 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -5.76 Total: 1.45 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: -1.56 Total: -7.38 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: 0.40 Total: -36.94 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: -1.21 Total: -23.32 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.63 -7.41 -44.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170905531.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.554 kcal (2) G-P(sol) polarization free energy of solvation -36.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds