Wall clock time and date at job start Tue Mar 31 2020 14:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35798 * 117.00505 * 2 1 4 4 C 1.38834 * 119.92632 * 0.02562 * 3 2 1 5 5 C 1.37794 * 120.15124 * 180.02562 * 4 3 2 6 6 C 1.39701 * 120.00309 * 0.02562 * 5 4 3 7 7 C 1.47609 * 120.06931 * 179.97438 * 6 5 4 8 8 O 1.21587 * 119.99550 * 180.02562 * 7 6 5 9 9 N 1.34778 * 120.00096 * 359.97438 * 7 6 5 10 10 C 1.46496 * 119.99947 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.47181 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47133 * 179.97438 * 11 10 9 13 13 C 1.50692 * 109.47205 * 179.97438 * 12 11 10 14 14 H 1.08002 * 120.00153 * 0.02562 * 13 12 11 15 15 C 1.37882 * 120.00286 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99880 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99883 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47228 * 90.00426 * 17 15 13 19 19 H 1.48510 * 109.46911 * 209.99691 * 17 15 13 20 20 H 1.48490 * 109.47585 * 329.99805 * 17 15 13 21 21 C 1.39730 * 119.85520 * 359.72272 * 6 5 4 22 22 C 1.38136 * 119.85280 * 0.52818 * 21 6 5 23 23 O 1.36007 * 120.00514 * 179.76864 * 22 21 6 24 24 C 1.42903 * 116.99577 * 359.72811 * 23 22 21 25 25 C 1.53000 * 109.46726 * 179.97438 * 24 23 22 26 26 O 1.42899 * 109.47405 * 64.99720 * 25 24 23 27 27 H 1.09000 * 109.47087 * 59.99529 * 1 2 3 28 28 H 1.08999 * 109.47623 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46795 * 300.00179 * 1 2 3 30 30 H 1.08005 * 119.92561 * 0.02562 * 4 3 2 31 31 H 1.08001 * 119.99701 * 180.02562 * 5 4 3 32 32 H 0.96997 * 119.99895 * 0.02562 * 9 7 6 33 33 H 1.09004 * 109.46999 * 300.00289 * 10 9 7 34 34 H 1.08995 * 109.47319 * 59.99668 * 10 9 7 35 35 H 1.08991 * 109.47094 * 299.99807 * 11 10 9 36 36 H 1.09003 * 109.46654 * 59.99985 * 11 10 9 37 37 H 1.09004 * 109.47429 * 300.00392 * 12 11 10 38 38 H 1.09008 * 109.46854 * 60.00184 * 12 11 10 39 39 H 0.96997 * 120.00239 * 180.02562 * 16 15 13 40 40 H 1.08002 * 120.07045 * 180.29621 * 21 6 5 41 41 H 1.09002 * 109.47382 * 59.99685 * 24 23 22 42 42 H 1.09001 * 109.46938 * 299.99671 * 24 23 22 43 43 H 1.09002 * 109.46642 * 184.99995 * 25 24 23 44 44 H 1.09002 * 109.47069 * 304.99524 * 25 24 23 45 45 H 0.96699 * 114.00112 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2099 0.0000 4 6 1.2881 2.3734 0.0005 5 6 1.9089 3.6035 0.0000 6 6 3.3037 3.6820 -0.0016 7 6 3.9703 4.9990 -0.0028 8 8 5.1843 5.0658 -0.0046 9 7 3.2332 6.1274 -0.0028 10 6 3.8949 7.4345 -0.0045 11 6 2.8382 8.5410 -0.0034 12 6 3.5292 9.9060 -0.0046 13 6 2.4885 10.9959 -0.0042 14 1 1.4391 10.7405 -0.0028 15 6 2.8758 12.3192 -0.0056 16 7 4.1537 12.6302 -0.0078 17 14 1.5857 13.6700 -0.0044 18 1 1.2460 14.0289 1.3959 19 1 2.1196 14.8651 -0.7060 20 1 0.3659 13.1903 -0.7022 21 6 4.0663 2.5112 0.0032 22 6 3.4378 1.2812 -0.0016 23 8 4.1771 0.1396 -0.0017 24 6 5.5984 0.2873 -0.0028 25 6 6.2547 -1.0949 -0.0021 26 8 5.9438 -1.7705 -1.2223 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 0.2096 2.3141 0.0014 31 1 1.3172 4.5070 0.0008 32 1 2.2647 6.0741 -0.0016 33 1 4.5184 7.5272 0.8848 34 1 4.5164 7.5260 -0.8951 35 1 2.2144 8.4484 -0.8924 36 1 2.2170 8.4493 0.8876 37 1 4.1529 9.9984 0.8846 38 1 4.1506 9.9979 -0.8954 39 1 4.4262 13.5611 -0.0084 40 1 5.1449 2.5679 0.0068 41 1 5.9075 0.8363 0.8867 42 1 5.9060 0.8355 -0.8933 43 1 7.3354 -0.9838 0.0866 44 1 5.8787 -1.6752 0.8405 45 1 6.3277 -2.6553 -1.2909 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170905531.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:11 Heat of formation + Delta-G solvation = -173.249070 kcal Electronic energy + Delta-G solvation = -26156.422435 eV Core-core repulsion = 22138.389447 eV Total energy + Delta-G solvation = -4018.032988 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.85721 -40.63493 -39.71370 -37.96140 -37.30524 -36.97995 -35.22789 -33.19236 -31.86853 -31.58641 -30.24461 -28.83386 -27.95406 -25.45729 -24.51896 -24.11583 -22.49150 -22.28720 -21.48974 -19.91982 -18.70718 -18.63616 -18.50797 -17.82374 -17.60497 -17.05648 -16.72463 -16.68794 -16.37560 -16.22532 -15.87094 -15.52100 -15.41378 -15.23389 -14.97501 -14.45532 -14.24309 -13.95714 -13.77663 -13.69408 -13.45777 -13.32224 -12.83534 -12.74822 -12.54478 -12.38196 -12.31319 -12.13211 -12.04225 -11.98400 -11.66867 -11.61719 -11.25443 -11.01963 -10.98655 -10.54575 -10.19914 -9.89318 -8.97165 -8.18627 -6.30000 -0.27068 0.21151 1.42572 1.43913 1.54835 1.74035 2.03346 2.14090 2.24910 2.43271 2.70732 3.15185 3.27973 3.62893 3.67837 3.84231 3.93341 4.06444 4.10931 4.12419 4.18488 4.21694 4.39048 4.42590 4.45074 4.49714 4.55218 4.61392 4.70163 4.78450 4.85522 4.94578 4.96931 5.08893 5.15868 5.18896 5.36750 5.46151 5.53357 5.71589 5.85095 5.99191 6.22915 6.47000 6.51132 6.87646 6.88165 7.14983 7.39506 8.93466 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.019988 B = 0.002008 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.532417 B =13937.418717 C =15233.463074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.324 6.324 3 C 0.121 3.879 4 C -0.172 4.172 5 C -0.068 4.068 6 C -0.149 4.149 7 C 0.555 3.445 8 O -0.587 6.587 9 N -0.706 5.706 10 C 0.129 3.871 11 C -0.102 4.102 12 C 0.023 3.977 13 C -0.540 4.540 14 H 0.068 0.932 15 C -0.005 4.005 16 N -0.935 5.935 17 Si 0.968 3.032 18 H -0.273 1.273 19 H -0.286 1.286 20 H -0.259 1.259 21 C -0.124 4.124 22 C 0.075 3.925 23 O -0.312 6.312 24 C 0.044 3.956 25 C 0.081 3.919 26 O -0.594 6.594 27 H 0.071 0.929 28 H 0.117 0.883 29 H 0.073 0.927 30 H 0.179 0.821 31 H 0.162 0.838 32 H 0.415 0.585 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.070 0.930 36 H 0.071 0.929 37 H -0.008 1.008 38 H -0.008 1.008 39 H 0.263 0.737 40 H 0.139 0.861 41 H 0.090 0.910 42 H 0.061 0.939 43 H 0.097 0.903 44 H 0.066 0.934 45 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.675 -31.729 1.185 32.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.237 6.237 3 C 0.074 3.926 4 C -0.190 4.190 5 C -0.087 4.087 6 C -0.152 4.152 7 C 0.344 3.656 8 O -0.469 6.469 9 N -0.358 5.358 10 C 0.005 3.995 11 C -0.140 4.140 12 C -0.015 4.015 13 C -0.578 4.578 14 H 0.086 0.914 15 C -0.203 4.203 16 N -0.576 5.576 17 Si 0.792 3.208 18 H -0.198 1.198 19 H -0.212 1.212 20 H -0.183 1.183 21 C -0.144 4.144 22 C 0.029 3.971 23 O -0.227 6.227 24 C -0.031 4.031 25 C 0.004 3.996 26 O -0.403 6.403 27 H 0.090 0.910 28 H 0.135 0.865 29 H 0.092 0.908 30 H 0.196 0.804 31 H 0.179 0.821 32 H 0.254 0.746 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.011 0.989 38 H 0.010 0.990 39 H 0.071 0.929 40 H 0.157 0.843 41 H 0.108 0.892 42 H 0.080 0.920 43 H 0.115 0.885 44 H 0.084 0.916 45 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -6.024 -31.373 1.066 31.964 hybrid contribution 0.060 0.866 0.099 0.874 sum -5.965 -30.507 1.165 31.107 Atomic orbital electron populations 1.23482 0.75828 1.05916 1.02926 1.86138 1.23857 1.25740 1.87985 1.18743 0.88960 0.86360 0.98571 1.21351 1.01858 0.89781 1.06017 1.21339 0.92006 0.99246 0.96106 1.19531 0.94688 0.91535 1.09449 1.18544 0.86499 0.84935 0.75644 1.90741 1.15578 1.88201 1.52384 1.45844 1.11082 1.04980 1.73919 1.21294 0.95906 0.81362 1.00907 1.21608 0.97094 0.92907 1.02361 1.18951 0.95381 0.92090 0.95090 1.21684 0.93940 0.91797 1.50335 0.91377 1.26045 0.97491 1.01889 0.94860 1.70113 1.16952 1.18766 1.51733 0.85403 0.79033 0.77908 0.78421 1.19849 1.21168 1.18339 1.21104 1.00977 0.90071 1.02255 1.18250 0.89152 0.85837 1.03818 1.86194 1.19511 1.27849 1.89146 1.23207 0.77995 0.99336 1.02595 1.22283 0.99191 0.90853 0.87283 1.86519 1.78843 1.35417 1.39499 0.91013 0.86460 0.90822 0.80412 0.82068 0.74635 0.92973 0.93058 0.91143 0.91072 0.98941 0.98981 0.92857 0.84286 0.89177 0.92040 0.88510 0.91568 0.74982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.81 113.37 1.11 1.22 16 2 O -0.32 -6.40 10.26 -77.27 -0.79 -7.19 16 3 C 0.12 2.55 6.71 22.69 0.15 2.70 16 4 C -0.17 -2.68 9.01 22.31 0.20 -2.48 16 5 C -0.07 -1.21 9.53 22.52 0.21 -1.00 16 6 C -0.15 -3.76 5.87 -20.09 -0.12 -3.88 16 7 C 0.55 17.49 7.76 86.72 0.67 18.16 16 8 O -0.59 -23.43 16.34 -3.99 -0.07 -23.50 16 9 N -0.71 -20.01 5.51 -466.20 -2.57 -22.58 16 10 C 0.13 4.58 5.67 86.38 0.49 5.07 16 11 C -0.10 -3.86 5.27 30.59 0.16 -3.70 16 12 C 0.02 1.17 4.97 29.85 0.15 1.32 16 13 C -0.54 -29.85 9.11 25.60 0.23 -29.62 16 14 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 15 C -0.01 -0.30 5.46 84.66 0.46 0.16 16 16 N -0.94 -57.10 13.29 21.45 0.28 -56.82 16 17 Si 0.97 43.56 29.54 68.60 2.03 45.59 16 18 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 19 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 20 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 21 C -0.12 -3.22 8.58 22.61 0.19 -3.02 16 22 C 0.07 1.86 6.69 22.53 0.15 2.01 16 23 O -0.31 -7.84 9.88 -73.48 -0.73 -8.56 16 24 C 0.04 0.83 5.12 71.98 0.37 1.20 16 25 C 0.08 1.08 7.43 71.98 0.53 1.62 16 26 O -0.59 -9.85 13.62 -144.34 -1.97 -11.82 16 27 H 0.07 0.45 7.65 -2.39 -0.02 0.44 16 28 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.07 0.43 7.65 -2.39 -0.02 0.41 16 30 H 0.18 1.41 6.27 -2.91 -0.02 1.40 16 31 H 0.16 1.89 6.39 -2.91 -0.02 1.87 16 32 H 0.42 8.60 6.49 -92.71 -0.60 8.00 16 33 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 34 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 37 H -0.01 -0.44 8.14 -2.38 -0.02 -0.46 16 38 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 39 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 40 H 0.14 3.69 5.87 -2.91 -0.02 3.68 16 41 H 0.09 1.44 7.65 -2.39 -0.02 1.42 16 42 H 0.06 1.27 7.67 -2.39 -0.02 1.25 16 43 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.40 2.43 9.12 -74.06 -0.68 1.75 16 Total: -1.00 -81.50 380.85 0.92 -80.58 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -0.25 Total: 14.54 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: 4.98 Total: -10.25 kcal Atomic # 7 Polarization: -77.11 SS G_CDS: -2.28 Total: -79.39 kcal Atomic # 8 Polarization: -47.52 SS G_CDS: -3.55 Total: -51.07 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -81.50 0.92 -80.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170905531.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.665 kcal (2) G-P(sol) polarization free energy of solvation -81.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds