Wall clock time and date at job start Tue Mar 31 2020 14:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35238 * 126.69175 * 2 1 4 4 C 1.42054 * 103.95452 * 179.97438 * 3 2 1 5 5 N 1.39351 * 126.89837 * 179.97438 * 4 3 2 6 6 C 1.34779 * 119.99944 * 0.02562 * 5 4 3 7 7 O 1.21351 * 120.00237 * 359.72464 * 6 5 4 8 8 C 1.49384 * 119.99818 * 179.72250 * 6 5 4 9 9 O 1.21350 * 120.00277 * 354.25272 * 8 6 5 10 10 N 1.34783 * 119.99796 * 174.24524 * 8 6 5 11 11 C 1.46503 * 119.99748 * 4.02986 * 10 8 6 12 12 C 1.50697 * 109.47060 * 83.07703 * 11 10 8 13 13 H 1.07993 * 120.00371 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99873 * 179.97438 * 12 11 10 15 15 N 1.31519 * 120.00046 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 120.00176 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47007 * 59.99956 * 16 14 12 18 18 H 1.48500 * 109.47424 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47349 * 300.00153 * 16 14 12 20 20 C 1.46502 * 119.99811 * 184.02465 * 10 8 6 21 21 C 1.52993 * 109.46781 * 90.00507 * 20 10 8 22 22 C 1.53002 * 109.46802 * 179.97438 * 21 20 10 23 23 C 1.53004 * 109.46823 * 65.00021 * 22 21 20 24 24 C 1.52999 * 109.47277 * 184.99602 * 22 21 20 25 25 N 1.30746 * 106.19965 * 0.23090 * 4 3 2 26 26 O 1.20917 * 111.47282 * 359.59235 * 25 4 3 27 27 H 1.08999 * 109.47459 * 89.99355 * 1 2 3 28 28 H 1.08997 * 109.47203 * 209.99945 * 1 2 3 29 29 H 1.09006 * 109.47174 * 329.99636 * 1 2 3 30 30 H 1.08003 * 128.02235 * 359.96031 * 3 2 1 31 31 H 0.97002 * 119.99959 * 179.72765 * 5 4 3 32 32 H 1.09001 * 109.46365 * 203.07428 * 11 10 8 33 33 H 1.08998 * 109.46887 * 323.07157 * 11 10 8 34 34 H 0.96995 * 120.00231 * 180.02562 * 15 14 12 35 35 H 1.08996 * 109.46801 * 210.00233 * 20 10 8 36 36 H 1.08997 * 109.46863 * 329.99944 * 20 10 8 37 37 H 1.09005 * 109.47094 * 299.99471 * 21 20 10 38 38 H 1.08997 * 109.47882 * 60.00061 * 21 20 10 39 39 H 1.08994 * 109.47100 * 305.00168 * 22 21 20 40 40 H 1.09010 * 109.46875 * 179.97438 * 23 22 21 41 41 H 1.08994 * 109.47123 * 299.99708 * 23 22 21 42 42 H 1.08994 * 109.47163 * 60.00185 * 23 22 21 43 43 H 1.09001 * 109.46986 * 60.00203 * 24 22 21 44 44 H 1.09001 * 109.47694 * 179.97438 * 24 22 21 45 45 H 1.09004 * 109.47346 * 300.00301 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3151 1.0844 0.0000 4 6 3.6252 0.5354 0.0006 5 7 4.8276 1.2398 0.0004 6 6 4.8190 2.5876 0.0000 7 8 3.7642 3.1877 -0.0052 8 6 6.1079 3.3427 0.0060 9 8 7.1595 2.7472 0.1164 10 7 6.1028 4.6854 -0.1115 11 6 4.8315 5.4119 -0.1561 12 6 4.3314 5.6360 1.2477 13 1 4.9032 5.2732 2.0890 14 6 3.1439 6.3043 1.4581 15 7 2.4474 6.7458 0.4335 16 14 2.5237 6.5815 3.1981 17 1 3.5218 7.3755 3.9587 18 1 1.2350 7.3181 3.1528 19 1 2.3209 5.2709 3.8660 20 6 7.3687 5.4181 -0.1943 21 6 7.7880 5.5476 -1.6600 22 6 9.1097 6.3134 -1.7466 23 6 10.2175 5.4958 -1.0793 24 6 9.4659 6.5516 -3.2154 25 7 3.4763 -0.7636 -0.0041 26 8 2.3080 -1.0752 0.0005 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5139 30 1 2.0303 2.1262 -0.0006 31 1 5.6707 0.7601 0.0048 32 1 4.9799 6.3738 -0.6469 33 1 4.0990 4.8285 -0.7140 34 1 1.6122 7.2163 0.5815 35 1 7.2424 6.4113 0.2365 36 1 8.1380 4.8779 0.3574 37 1 7.9143 4.5543 -2.0909 38 1 7.0187 6.0878 -2.2117 39 1 9.0084 7.2717 -1.2373 40 1 11.1593 6.0412 -1.1414 41 1 9.9638 5.3261 -0.0330 42 1 10.3188 4.5375 -1.5887 43 1 8.6767 7.1340 -3.6908 44 1 10.4072 7.0976 -3.2771 45 1 9.5672 5.5932 -3.7247 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171548713.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:36 Heat of formation + Delta-G solvation = -3.904599 kcal Electronic energy + Delta-G solvation = -28037.617041 eV Core-core repulsion = 24059.220131 eV Total energy + Delta-G solvation = -3978.396910 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.67906 -40.40903 -38.38411 -36.68587 -35.74781 -34.52605 -33.46522 -32.53414 -31.70442 -29.46542 -27.71422 -27.13057 -27.08931 -25.36568 -23.51640 -23.09967 -22.17817 -20.62772 -19.88845 -19.28868 -17.51834 -17.21959 -17.14290 -16.56892 -16.47391 -15.78229 -15.27095 -15.12613 -14.87531 -14.32553 -14.15308 -13.64639 -13.54554 -13.42824 -13.30577 -13.25241 -13.18395 -12.44162 -12.41569 -12.32254 -12.15127 -11.78064 -11.67614 -11.40883 -11.12166 -11.08098 -11.07288 -10.89795 -10.81655 -10.57469 -10.48700 -10.32581 -10.00630 -9.72770 -9.23503 -8.89692 -8.62868 -8.35573 -7.90318 -6.09504 -4.12804 1.47253 1.88646 2.46362 2.64762 3.27327 3.27875 3.31951 3.35489 3.77391 3.85965 4.38177 4.48841 4.81732 4.99824 5.03626 5.04757 5.07658 5.23830 5.26653 5.34562 5.38612 5.50640 5.65185 5.65292 5.72858 5.80031 5.87442 5.89140 5.91543 6.01510 6.14380 6.18026 6.22026 6.30338 6.50586 6.54171 6.60526 6.62703 7.14570 7.32551 7.37649 7.79101 8.00107 8.10919 8.18502 8.46505 8.53308 8.88700 9.50575 10.98945 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.009140 B = 0.004545 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3062.640721 B = 6159.143775 C = 8477.956273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.032 4.032 3 C -0.222 4.222 4 C 0.257 3.743 5 N -0.620 5.620 6 C 0.500 3.500 7 O -0.429 6.429 8 C 0.513 3.487 9 O -0.555 6.555 10 N -0.554 5.554 11 C 0.220 3.780 12 C -0.522 4.522 13 H 0.054 0.946 14 C 0.071 3.929 15 N -0.889 5.889 16 Si 0.893 3.107 17 H -0.277 1.277 18 H -0.286 1.286 19 H -0.277 1.277 20 C 0.114 3.886 21 C -0.129 4.129 22 C -0.094 4.094 23 C -0.148 4.148 24 C -0.145 4.145 25 N -0.397 5.397 26 O 0.090 5.910 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.195 0.805 31 H 0.424 0.576 32 H 0.034 0.966 33 H 0.074 0.926 34 H 0.263 0.737 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.049 0.951 41 H 0.059 0.941 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.051 0.949 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.359 -6.691 -4.568 8.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.095 4.095 3 C -0.244 4.244 4 C 0.008 3.992 5 N -0.275 5.275 6 C 0.281 3.719 7 O -0.294 6.294 8 C 0.295 3.705 9 O -0.436 6.436 10 N -0.284 5.284 11 C 0.102 3.898 12 C -0.560 4.560 13 H 0.072 0.928 14 C -0.132 4.132 15 N -0.527 5.527 16 Si 0.720 3.280 17 H -0.203 1.203 18 H -0.211 1.211 19 H -0.203 1.203 20 C -0.009 4.009 21 C -0.167 4.167 22 C -0.113 4.113 23 C -0.205 4.205 24 C -0.202 4.202 25 N -0.115 5.115 26 O 0.031 5.969 27 H 0.105 0.895 28 H 0.099 0.901 29 H 0.112 0.888 30 H 0.212 0.788 31 H 0.261 0.739 32 H 0.052 0.948 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.070 0.930 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.751 -7.341 -4.576 9.429 hybrid contribution -0.310 0.791 1.059 1.358 sum 3.441 -6.550 -3.517 8.192 Atomic orbital electron populations 1.20313 0.83888 1.04586 1.04018 1.24388 0.96392 0.85870 1.02875 1.22908 0.89230 1.02555 1.09746 1.20494 0.88503 0.88746 1.01436 1.42297 1.06344 1.06212 1.72682 1.20543 0.91693 0.81127 0.78551 1.90867 1.31993 1.65959 1.40601 1.19391 0.87705 0.83879 0.79519 1.90674 1.32228 1.68840 1.51907 1.48270 1.10238 1.04490 1.65375 1.20129 0.78394 0.92477 0.98814 1.21192 1.06457 1.36801 0.91583 0.92802 1.24796 0.96151 0.95366 0.96891 1.69907 1.15028 1.37974 1.29802 0.86651 0.78123 0.78334 0.84854 1.20310 1.21141 1.20292 1.21596 0.85555 0.97343 0.96413 1.22007 0.96692 1.00749 0.97280 1.21047 0.94759 0.99171 0.96289 1.21890 0.97703 0.99875 1.01081 1.21823 1.00997 1.01406 0.96021 1.74011 0.97527 1.13144 1.26852 1.84752 1.10454 1.32386 1.69323 0.89481 0.90055 0.88809 0.78768 0.73873 0.94802 0.90825 0.92723 0.89759 0.90178 0.91885 0.91438 0.91004 0.93169 0.92232 0.92727 0.92689 0.92960 0.92874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.63 10.45 36.01 0.38 -0.25 16 2 C -0.03 -0.43 7.47 -35.38 -0.26 -0.70 16 3 C -0.22 -3.74 9.79 -39.19 -0.38 -4.12 16 4 C 0.26 4.54 8.17 -154.94 -1.27 3.27 16 5 N -0.62 -10.94 5.41 -11.86 -0.06 -11.01 16 6 C 0.50 10.06 7.73 -11.62 -0.09 9.97 16 7 O -0.43 -9.67 9.66 5.50 0.05 -9.61 16 8 C 0.51 10.47 7.67 -11.61 -0.09 10.38 16 9 O -0.56 -11.31 16.04 5.50 0.09 -11.22 16 10 N -0.55 -11.36 2.48 -175.60 -0.43 -11.80 16 11 C 0.22 5.26 4.77 -5.19 -0.02 5.23 16 12 C -0.52 -13.78 8.34 -34.44 -0.29 -14.06 16 13 H 0.05 1.46 7.81 -52.49 -0.41 1.05 16 14 C 0.07 1.90 5.46 -17.82 -0.10 1.81 16 15 N -0.89 -24.77 13.29 55.43 0.74 -24.04 16 16 Si 0.89 21.07 29.54 -169.99 -5.02 16.04 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 C 0.11 1.95 5.16 -4.04 -0.02 1.93 16 21 C -0.13 -1.89 5.01 -26.73 -0.13 -2.02 16 22 C -0.09 -1.12 2.92 -90.62 -0.26 -1.39 16 23 C -0.15 -1.70 8.95 37.16 0.33 -1.37 16 24 C -0.15 -1.54 9.19 37.16 0.34 -1.20 16 25 N -0.40 -6.68 12.10 31.18 0.38 -6.30 16 26 O 0.09 1.35 11.19 17.07 0.19 1.54 16 27 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.20 3.60 6.22 -52.48 -0.33 3.28 16 31 H 0.42 6.71 8.31 -40.82 -0.34 6.37 16 32 H 0.03 0.84 8.02 -51.93 -0.42 0.42 16 33 H 0.07 1.89 5.39 -51.93 -0.28 1.61 16 34 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 35 H 0.08 1.43 8.07 -51.93 -0.42 1.01 16 36 H 0.08 1.35 5.79 -51.93 -0.30 1.05 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.05 0.50 8.14 -51.92 -0.42 0.07 16 41 H 0.06 0.72 6.56 -51.93 -0.34 0.38 16 42 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 376.15 15.07 5.67 5.67 Total: -1.00 -30.05 376.15 -6.89 -36.95 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -6.62 Total: 6.29 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: -1.87 Total: 7.48 kcal Atomic # 7 Polarization: -53.76 SS G_CDS: 0.61 Total: -53.14 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: 0.33 Total: -19.29 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.05 -6.89 -36.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171548713.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.041 kcal (2) G-P(sol) polarization free energy of solvation -30.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds