Wall clock time and date at job start Tue Mar 31 2020 14:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35238 * 126.69175 * 2 1 4 4 C 1.42054 * 103.95452 * 179.97438 * 3 2 1 5 5 N 1.39351 * 126.89837 * 179.97438 * 4 3 2 6 6 C 1.34779 * 119.99944 * 0.02562 * 5 4 3 7 7 O 1.21351 * 120.00237 * 359.72464 * 6 5 4 8 8 C 1.49384 * 119.99818 * 179.72250 * 6 5 4 9 9 O 1.21350 * 120.00277 * 354.25272 * 8 6 5 10 10 N 1.34783 * 119.99796 * 174.24524 * 8 6 5 11 11 C 1.46503 * 119.99748 * 4.02986 * 10 8 6 12 12 C 1.50697 * 109.47060 * 83.07703 * 11 10 8 13 13 H 1.07993 * 120.00371 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99873 * 179.97438 * 12 11 10 15 15 N 1.31519 * 120.00046 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 120.00176 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47007 * 59.99956 * 16 14 12 18 18 H 1.48500 * 109.47424 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47349 * 300.00153 * 16 14 12 20 20 C 1.46502 * 119.99811 * 184.02465 * 10 8 6 21 21 C 1.52993 * 109.46781 * 90.00507 * 20 10 8 22 22 C 1.53002 * 109.46802 * 179.97438 * 21 20 10 23 23 C 1.53004 * 109.46823 * 65.00021 * 22 21 20 24 24 C 1.52999 * 109.47277 * 184.99602 * 22 21 20 25 25 N 1.30746 * 106.19965 * 0.23090 * 4 3 2 26 26 O 1.20917 * 111.47282 * 359.59235 * 25 4 3 27 27 H 1.08999 * 109.47459 * 89.99355 * 1 2 3 28 28 H 1.08997 * 109.47203 * 209.99945 * 1 2 3 29 29 H 1.09006 * 109.47174 * 329.99636 * 1 2 3 30 30 H 1.08003 * 128.02235 * 359.96031 * 3 2 1 31 31 H 0.97002 * 119.99959 * 179.72765 * 5 4 3 32 32 H 1.09001 * 109.46365 * 203.07428 * 11 10 8 33 33 H 1.08998 * 109.46887 * 323.07157 * 11 10 8 34 34 H 0.96995 * 120.00231 * 180.02562 * 15 14 12 35 35 H 1.08996 * 109.46801 * 210.00233 * 20 10 8 36 36 H 1.08997 * 109.46863 * 329.99944 * 20 10 8 37 37 H 1.09005 * 109.47094 * 299.99471 * 21 20 10 38 38 H 1.08997 * 109.47882 * 60.00061 * 21 20 10 39 39 H 1.08994 * 109.47100 * 305.00168 * 22 21 20 40 40 H 1.09010 * 109.46875 * 179.97438 * 23 22 21 41 41 H 1.08994 * 109.47123 * 299.99708 * 23 22 21 42 42 H 1.08994 * 109.47163 * 60.00185 * 23 22 21 43 43 H 1.09001 * 109.46986 * 60.00203 * 24 22 21 44 44 H 1.09001 * 109.47694 * 179.97438 * 24 22 21 45 45 H 1.09004 * 109.47346 * 300.00301 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3151 1.0844 0.0000 4 6 3.6252 0.5354 0.0006 5 7 4.8276 1.2398 0.0004 6 6 4.8190 2.5876 0.0000 7 8 3.7642 3.1877 -0.0052 8 6 6.1079 3.3427 0.0060 9 8 7.1595 2.7472 0.1164 10 7 6.1028 4.6854 -0.1115 11 6 4.8315 5.4119 -0.1561 12 6 4.3314 5.6360 1.2477 13 1 4.9032 5.2732 2.0890 14 6 3.1439 6.3043 1.4581 15 7 2.4474 6.7458 0.4335 16 14 2.5237 6.5815 3.1981 17 1 3.5218 7.3755 3.9587 18 1 1.2350 7.3181 3.1528 19 1 2.3209 5.2709 3.8660 20 6 7.3687 5.4181 -0.1943 21 6 7.7880 5.5476 -1.6600 22 6 9.1097 6.3134 -1.7466 23 6 10.2175 5.4958 -1.0793 24 6 9.4659 6.5516 -3.2154 25 7 3.4763 -0.7636 -0.0041 26 8 2.3080 -1.0752 0.0005 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5139 30 1 2.0303 2.1262 -0.0006 31 1 5.6707 0.7601 0.0048 32 1 4.9799 6.3738 -0.6469 33 1 4.0990 4.8285 -0.7140 34 1 1.6122 7.2163 0.5815 35 1 7.2424 6.4113 0.2365 36 1 8.1380 4.8779 0.3574 37 1 7.9143 4.5543 -2.0909 38 1 7.0187 6.0878 -2.2117 39 1 9.0084 7.2717 -1.2373 40 1 11.1593 6.0412 -1.1414 41 1 9.9638 5.3261 -0.0330 42 1 10.3188 4.5375 -1.5887 43 1 8.6767 7.1340 -3.6908 44 1 10.4072 7.0976 -3.2771 45 1 9.5672 5.5932 -3.7247 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171548713.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:35 Heat of formation + Delta-G solvation = -20.764858 kcal Electronic energy + Delta-G solvation = -28038.348156 eV Core-core repulsion = 24059.220131 eV Total energy + Delta-G solvation = -3979.128025 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.97098 -42.02157 -39.94287 -38.03979 -37.16461 -36.07299 -34.58575 -34.48656 -33.06877 -30.86746 -29.01418 -28.68858 -27.98962 -26.84937 -25.02858 -24.82227 -23.54570 -21.98739 -20.99350 -20.77121 -18.92224 -18.80148 -18.58453 -18.32954 -17.95855 -17.26694 -16.91425 -16.71349 -16.18357 -16.01314 -15.55375 -15.10520 -14.75240 -14.54850 -14.49475 -14.40644 -14.29606 -13.97001 -13.77497 -13.61956 -13.28615 -13.14306 -12.93433 -12.90731 -12.77994 -12.69245 -12.38894 -12.27876 -12.24752 -11.99300 -11.89204 -11.59236 -11.52567 -11.42995 -10.72633 -10.43679 -10.27588 -9.99764 -9.61700 -8.15213 -6.24786 0.03761 0.54225 0.97531 1.23196 1.39600 1.40930 1.48043 2.11725 2.16314 2.32242 2.46165 3.13930 3.17957 3.35448 3.80920 3.91618 3.93358 4.03693 4.06096 4.27577 4.34097 4.52225 4.64817 4.69343 4.73139 4.74915 4.81445 4.85114 4.88176 4.91435 5.04132 5.11171 5.12917 5.14005 5.26731 5.31405 5.39116 5.45169 5.48697 5.55393 5.73562 5.81831 6.09339 6.23495 6.57789 6.77331 6.93906 7.21185 7.41671 8.92484 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.009140 B = 0.004545 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3062.640721 B = 6159.143775 C = 8477.956273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.000 4.000 3 C -0.257 4.257 4 C 0.237 3.763 5 N -0.609 5.609 6 C 0.501 3.499 7 O -0.458 6.458 8 C 0.512 3.488 9 O -0.555 6.555 10 N -0.558 5.558 11 C 0.239 3.761 12 C -0.529 4.529 13 H 0.043 0.957 14 C 0.027 3.973 15 N -0.916 5.916 16 Si 0.948 3.052 17 H -0.270 1.270 18 H -0.278 1.278 19 H -0.281 1.281 20 C 0.110 3.890 21 C -0.119 4.119 22 C -0.091 4.091 23 C -0.146 4.146 24 C -0.142 4.142 25 N -0.404 5.404 26 O 0.100 5.900 27 H 0.110 0.890 28 H 0.109 0.891 29 H 0.099 0.901 30 H 0.175 0.825 31 H 0.431 0.569 32 H 0.023 0.977 33 H 0.056 0.944 34 H 0.265 0.735 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.049 0.951 42 H 0.049 0.951 43 H 0.053 0.947 44 H 0.069 0.931 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.240 -7.296 -4.294 9.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.064 4.064 3 C -0.280 4.280 4 C -0.012 4.012 5 N -0.264 5.264 6 C 0.282 3.718 7 O -0.326 6.326 8 C 0.294 3.706 9 O -0.436 6.436 10 N -0.287 5.287 11 C 0.119 3.881 12 C -0.567 4.567 13 H 0.061 0.939 14 C -0.173 4.173 15 N -0.555 5.555 16 Si 0.774 3.226 17 H -0.195 1.195 18 H -0.203 1.203 19 H -0.207 1.207 20 C -0.011 4.011 21 C -0.158 4.158 22 C -0.110 4.110 23 C -0.203 4.203 24 C -0.200 4.200 25 N -0.121 5.121 26 O 0.040 5.960 27 H 0.128 0.872 28 H 0.127 0.873 29 H 0.117 0.883 30 H 0.192 0.808 31 H 0.270 0.730 32 H 0.041 0.959 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.088 0.912 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.682 -7.971 -4.304 9.778 hybrid contribution -0.307 0.877 0.955 1.333 sum 3.374 -7.094 -3.349 8.539 Atomic orbital electron populations 1.20622 0.80072 1.06199 1.05926 1.25085 0.98012 0.84213 0.99102 1.22791 0.89779 1.02620 1.12811 1.20674 0.88598 0.89273 1.02627 1.42083 1.07033 1.05487 1.71787 1.20522 0.91198 0.81816 0.78266 1.90868 1.32676 1.66717 1.42316 1.19463 0.87874 0.83886 0.79405 1.90662 1.32210 1.68734 1.52010 1.48240 1.10344 1.04650 1.65482 1.19674 0.79405 0.91733 0.97323 1.21360 1.06581 1.36550 0.92256 0.93865 1.25475 0.96353 0.95245 1.00227 1.69998 1.15381 1.38633 1.31473 0.85769 0.77983 0.78026 0.80790 1.19512 1.20297 1.20653 1.21807 0.84107 0.96919 0.98274 1.21927 0.98068 1.00659 0.95129 1.21048 0.93278 0.98965 0.97665 1.21870 0.98332 0.99854 1.00267 1.21798 1.01833 1.01671 0.94665 1.74010 0.98518 1.12523 1.27012 1.84733 1.10105 1.32594 1.68591 0.87201 0.87274 0.88281 0.80769 0.72999 0.95905 0.92630 0.92593 0.89789 0.89771 0.92692 0.92293 0.90488 0.91203 0.93144 0.93148 0.92809 0.91194 0.92894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.06 10.45 71.24 0.74 -0.31 16 2 C 0.00 -0.01 7.47 24.99 0.19 0.18 16 3 C -0.26 -8.75 9.79 22.52 0.22 -8.53 16 4 C 0.24 8.41 8.17 134.16 1.10 9.51 16 5 N -0.61 -21.92 5.41 -310.81 -1.68 -23.60 16 6 C 0.50 20.80 7.73 87.25 0.67 21.47 16 7 O -0.46 -21.53 9.66 -3.25 -0.03 -21.56 16 8 C 0.51 21.29 7.67 87.25 0.67 21.96 16 9 O -0.55 -22.66 16.04 -3.25 -0.05 -22.71 16 10 N -0.56 -23.42 2.48 -827.83 -2.05 -25.47 16 11 C 0.24 11.75 4.77 85.63 0.41 12.16 16 12 C -0.53 -28.48 8.34 25.60 0.21 -28.26 16 13 H 0.04 2.37 7.81 -2.91 -0.02 2.35 16 14 C 0.03 1.48 5.46 84.65 0.46 1.94 16 15 N -0.92 -51.75 13.29 21.45 0.28 -51.46 16 16 Si 0.95 43.30 29.54 68.60 2.03 45.33 16 17 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 18 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 19 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 20 C 0.11 3.82 5.16 86.38 0.45 4.26 16 21 C -0.12 -3.50 5.01 30.59 0.15 -3.35 16 22 C -0.09 -2.07 2.92 -10.79 -0.03 -2.10 16 23 C -0.15 -3.14 8.95 71.98 0.64 -2.49 16 24 C -0.14 -2.78 9.19 71.98 0.66 -2.12 16 25 N -0.40 -13.30 12.10 -56.34 -0.68 -13.99 16 26 O 0.10 2.84 11.19 71.24 0.80 3.63 16 27 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 30 H 0.18 6.76 6.22 -2.91 -0.02 6.74 16 31 H 0.43 13.80 8.31 -92.71 -0.77 13.03 16 32 H 0.02 1.17 8.02 -2.39 -0.02 1.15 16 33 H 0.06 2.99 5.39 -2.41 -0.01 2.98 16 34 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 35 H 0.08 2.88 8.07 -2.39 -0.02 2.87 16 36 H 0.08 2.84 5.79 -2.39 -0.01 2.83 16 37 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 38 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 41 H 0.05 1.16 6.56 -2.39 -0.02 1.15 16 42 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 Total: -1.00 -64.96 376.15 5.40 -59.56 By element: Atomic # 1 Polarization: 25.71 SS G_CDS: 0.24 Total: 25.96 kcal Atomic # 6 Polarization: 17.77 SS G_CDS: 6.55 Total: 24.32 kcal Atomic # 7 Polarization: -110.39 SS G_CDS: -4.13 Total: -114.52 kcal Atomic # 8 Polarization: -41.35 SS G_CDS: 0.71 Total: -40.64 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -64.96 5.40 -59.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171548713.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.792 kcal (2) G-P(sol) polarization free energy of solvation -64.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds