Wall clock time and date at job start Tue Mar 31 2020 13:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42890 * 109.47401 * 2 1 4 4 C 1.35987 * 117.00214 * 179.97438 * 3 2 1 5 5 C 1.38691 * 120.00081 * 359.72510 * 4 3 2 6 6 C 1.38132 * 120.00456 * 179.76226 * 5 4 3 7 7 C 1.38704 * 119.99545 * 0.51660 * 6 5 4 8 8 O 1.35976 * 120.00217 * 179.72232 * 7 6 5 9 9 C 1.42910 * 116.99877 * 0.02562 * 8 7 6 10 10 C 1.52997 * 109.47275 * 180.02562 * 9 8 7 11 11 N 1.46500 * 109.46938 * 65.00008 * 10 9 8 12 12 C 1.36939 * 120.00038 * 89.99961 * 11 10 9 13 13 H 1.07990 * 120.00175 * 359.00036 * 12 11 10 14 14 C 1.38820 * 119.99821 * 178.99772 * 12 11 10 15 15 N 1.31619 * 119.99748 * 28.17626 * 14 12 11 16 16 Si 1.86798 * 119.99810 * 208.17124 * 14 12 11 17 17 H 1.48495 * 109.46998 * 90.00331 * 16 14 12 18 18 H 1.48497 * 109.46880 * 210.00368 * 16 14 12 19 19 H 1.48504 * 109.47099 * 330.00366 * 16 14 12 20 20 C 1.46502 * 119.99924 * 270.00024 * 11 10 9 21 21 C 1.50700 * 109.47429 * 96.72854 * 20 11 10 22 22 O 1.20827 * 119.99896 * 359.97438 * 21 20 11 23 23 O 1.34223 * 120.00488 * 179.97438 * 21 20 11 24 24 C 1.45205 * 117.00479 * 179.97438 * 23 21 20 25 25 C 1.38703 * 119.99760 * 359.73690 * 7 6 5 26 26 C 1.38123 * 120.00241 * 0.02562 * 25 7 6 27 27 H 1.09000 * 109.47173 * 60.00161 * 1 2 3 28 28 H 1.09006 * 109.47193 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47417 * 299.99794 * 1 2 3 30 30 H 1.09003 * 109.47527 * 239.99609 * 2 1 3 31 31 H 1.09005 * 109.46889 * 120.00219 * 2 1 3 32 32 H 1.08003 * 119.99864 * 0.02562 * 5 4 3 33 33 H 1.07990 * 120.00546 * 180.23361 * 6 5 4 34 34 H 1.09001 * 109.46785 * 300.00067 * 9 8 7 35 35 H 1.09001 * 109.46979 * 59.99884 * 9 8 7 36 36 H 1.08996 * 109.47071 * 184.99568 * 10 9 8 37 37 H 1.09001 * 109.46984 * 305.00310 * 10 9 8 38 38 H 0.97005 * 119.99336 * 179.97438 * 15 14 12 39 39 H 1.09001 * 109.47332 * 216.72447 * 20 11 10 40 40 H 1.08994 * 109.47241 * 336.72539 * 20 11 10 41 41 H 1.08994 * 109.47546 * 179.97438 * 24 23 21 42 42 H 1.09003 * 109.46750 * 300.00430 * 24 23 21 43 43 H 1.08995 * 109.46602 * 59.99603 * 24 23 21 44 44 H 1.07997 * 119.99649 * 179.97438 * 25 7 6 45 45 H 1.07997 * 120.00109 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3545 1.5253 0.0005 5 6 4.1993 0.4254 0.0068 6 6 5.5687 0.6063 0.0024 7 6 6.0989 1.8880 0.0025 8 8 7.4470 2.0662 0.0039 9 6 8.2570 0.8888 0.0046 10 6 9.7344 1.2863 0.0067 11 7 10.0526 1.9763 1.2592 12 6 10.4798 1.2608 2.3458 13 1 10.5667 0.1861 2.2845 14 6 10.8012 1.9169 3.5262 15 7 10.2167 3.0576 3.8252 16 14 12.0631 1.1806 4.6902 17 1 13.4154 1.6810 4.3350 18 1 11.7398 1.5754 6.0848 19 1 12.0374 -0.2998 4.5761 20 6 9.9138 3.4320 1.3493 21 6 8.5801 3.7724 1.9629 22 8 7.8231 2.8897 2.2910 23 8 8.2332 5.0562 2.1451 24 6 6.9336 5.3098 2.7410 25 6 5.2540 2.9880 0.0016 26 6 3.8846 2.8070 0.0010 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 3.7865 -0.5726 0.0109 33 1 6.2266 -0.2501 0.0035 34 1 8.0387 0.2982 0.8943 35 1 8.0405 0.2983 -0.8857 36 1 10.3513 0.3921 -0.0822 37 1 9.9333 1.9502 -0.8345 38 1 10.4411 3.5159 4.6503 39 1 10.7132 3.8355 1.9707 40 1 9.9756 3.8653 0.3511 41 1 6.7792 6.3849 2.8322 42 1 6.1547 4.8827 2.1093 43 1 6.8915 4.8519 3.7292 44 1 5.6668 3.9859 0.0021 45 1 3.2268 3.6635 0.0007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174569964.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:28 Heat of formation + Delta-G solvation = -98.276063 kcal Electronic energy + Delta-G solvation = -28711.531373 eV Core-core repulsion = 24696.749459 eV Total energy + Delta-G solvation = -4014.781915 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.08558 -38.85390 -38.45253 -36.46460 -35.51496 -34.27104 -31.95252 -31.65715 -30.80434 -29.27062 -28.16583 -27.27353 -25.84365 -24.23984 -23.73965 -22.10270 -21.37329 -20.56833 -19.56018 -18.26552 -17.49265 -16.71201 -16.11062 -16.08127 -15.84075 -15.70257 -14.93220 -14.71778 -14.63336 -14.46926 -13.90432 -13.67256 -13.44830 -13.37157 -13.19314 -13.06065 -12.57530 -12.47011 -12.14143 -12.07393 -11.75319 -11.68715 -11.58246 -11.20831 -11.01662 -10.94808 -10.85707 -10.68673 -10.43503 -10.23594 -10.12364 -9.97152 -9.77889 -9.32753 -8.83525 -8.79438 -8.36361 -7.31273 -7.16211 -5.94155 -3.15318 1.52941 1.83854 3.28023 3.36712 3.44147 3.45998 3.89871 4.07922 4.16228 4.29153 4.51674 4.76801 4.80588 4.99591 5.07415 5.10548 5.24487 5.28048 5.32259 5.49388 5.60167 5.66213 5.70451 5.82862 5.86089 5.91618 5.95941 5.97949 6.03737 6.13125 6.24958 6.26796 6.44057 6.47801 6.53253 6.55930 6.70362 6.86412 6.90511 7.23545 7.54630 7.69031 8.01701 8.08177 8.16031 9.02588 9.62623 9.79868 10.13649 11.17071 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.016824 B = 0.003570 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.888237 B = 7841.101743 C = 8304.915151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.321 6.321 4 C 0.071 3.929 5 C -0.166 4.166 6 C -0.177 4.177 7 C 0.135 3.865 8 O -0.288 6.288 9 C 0.039 3.961 10 C 0.149 3.851 11 N -0.568 5.568 12 C -0.254 4.254 13 H 0.081 0.919 14 C 0.005 3.995 15 N -0.896 5.896 16 Si 0.903 3.097 17 H -0.287 1.287 18 H -0.294 1.294 19 H -0.281 1.281 20 C 0.191 3.809 21 C 0.474 3.526 22 O -0.493 6.493 23 O -0.387 6.387 24 C 0.046 3.954 25 C -0.119 4.119 26 C -0.110 4.110 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.122 0.878 33 H 0.126 0.874 34 H 0.062 0.938 35 H 0.038 0.962 36 H 0.077 0.923 37 H 0.054 0.946 38 H 0.257 0.743 39 H 0.110 0.890 40 H 0.048 0.952 41 H 0.075 0.925 42 H 0.044 0.956 43 H 0.048 0.952 44 H 0.130 0.870 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.696 -2.167 -9.549 15.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.236 6.236 4 C 0.027 3.973 5 C -0.185 4.185 6 C -0.196 4.196 7 C 0.089 3.911 8 O -0.200 6.200 9 C -0.039 4.039 10 C 0.022 3.978 11 N -0.288 5.288 12 C -0.382 4.382 13 H 0.099 0.901 14 C -0.193 4.193 15 N -0.541 5.541 16 Si 0.733 3.267 17 H -0.214 1.214 18 H -0.221 1.221 19 H -0.207 1.207 20 C 0.062 3.938 21 C 0.314 3.686 22 O -0.376 6.376 23 O -0.305 6.305 24 C -0.050 4.050 25 C -0.138 4.138 26 C -0.129 4.129 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.140 0.860 33 H 0.144 0.856 34 H 0.080 0.920 35 H 0.056 0.944 36 H 0.095 0.905 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.127 0.873 40 H 0.066 0.934 41 H 0.093 0.907 42 H 0.063 0.937 43 H 0.067 0.933 44 H 0.148 0.852 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -11.933 -2.057 -9.279 15.256 hybrid contribution 0.178 -0.994 1.194 1.564 sum -11.755 -3.052 -8.085 14.590 Atomic orbital electron populations 1.21758 0.93100 1.02560 1.03360 1.22670 0.95504 0.82691 1.01105 1.86020 1.19305 1.28451 1.89871 1.18709 0.81914 0.94033 1.02621 1.20921 0.93607 0.97656 1.06284 1.21032 0.95230 0.96630 1.06734 1.18917 0.84327 0.92885 0.95019 1.86144 1.12704 1.34070 1.87086 1.23791 0.94065 0.86685 0.99325 1.21065 0.89872 0.97468 0.89429 1.44252 1.73965 1.01821 1.08718 1.19246 1.36161 0.91611 0.91221 0.90074 1.24698 1.00136 0.97321 0.97116 1.69895 1.40291 1.19057 1.24851 0.86259 0.82347 0.78471 0.79642 1.21372 1.22100 1.20669 1.20592 0.92074 0.84290 0.96798 1.25062 0.89238 0.78770 0.75571 1.90437 1.52207 1.48106 1.46863 1.86533 1.35695 1.33013 1.75285 1.22774 0.84449 0.99784 0.97944 1.20164 0.91171 0.98023 1.04414 1.20108 0.94053 0.94699 1.04045 0.91673 0.90649 0.91605 0.92456 0.92369 0.86009 0.85569 0.91955 0.94361 0.90522 0.92774 0.93190 0.87279 0.93355 0.90663 0.93748 0.93302 0.85224 0.85219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 10.28 37.15 0.38 -0.80 16 2 C 0.06 0.58 5.46 37.15 0.20 0.78 16 3 O -0.32 -4.49 10.14 -19.70 -0.20 -4.69 16 4 C 0.07 1.10 6.69 -39.24 -0.26 0.84 16 5 C -0.17 -2.52 9.03 -39.45 -0.36 -2.87 16 6 C -0.18 -3.00 9.03 -39.45 -0.36 -3.36 16 7 C 0.14 2.54 6.38 -39.24 -0.25 2.29 16 8 O -0.29 -5.82 6.68 -42.16 -0.28 -6.10 16 9 C 0.04 0.73 4.84 37.16 0.18 0.91 16 10 C 0.15 2.81 6.11 -4.04 -0.02 2.79 16 11 N -0.57 -13.36 2.05 -174.61 -0.36 -13.72 16 12 C -0.25 -6.61 9.49 -15.06 -0.14 -6.75 16 13 H 0.08 2.07 7.97 -52.49 -0.42 1.65 16 14 C 0.01 0.14 4.98 -17.43 -0.09 0.05 16 15 N -0.90 -25.07 8.78 55.49 0.49 -24.58 16 16 Si 0.90 21.28 29.64 -169.99 -5.04 16.24 16 17 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 18 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 C 0.19 4.50 5.46 -5.19 -0.03 4.47 16 21 C 0.47 11.68 4.98 36.01 0.18 11.86 16 22 O -0.49 -13.23 13.11 -26.22 -0.34 -13.58 16 23 O -0.39 -8.79 10.56 -39.24 -0.41 -9.20 16 24 C 0.05 0.87 10.56 101.05 1.07 1.93 16 25 C -0.12 -2.06 9.98 -39.45 -0.39 -2.45 16 26 C -0.11 -1.72 9.98 -39.45 -0.39 -2.12 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.53 7.67 -51.93 -0.40 0.14 16 31 H 0.06 0.58 7.65 -51.93 -0.40 0.19 16 32 H 0.12 1.52 6.29 -52.48 -0.33 1.19 16 33 H 0.13 1.99 6.29 -52.49 -0.33 1.66 16 34 H 0.06 1.31 7.66 -51.93 -0.40 0.91 16 35 H 0.04 0.59 7.66 -51.93 -0.40 0.19 16 36 H 0.08 1.31 8.04 -51.93 -0.42 0.89 16 37 H 0.05 0.92 7.85 -51.93 -0.41 0.51 16 38 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 39 H 0.11 2.78 6.22 -51.93 -0.32 2.46 16 40 H 0.05 1.00 7.82 -51.93 -0.41 0.59 16 41 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.04 0.81 7.91 -51.93 -0.41 0.40 16 43 H 0.05 1.00 8.13 -51.93 -0.42 0.58 16 44 H 0.13 2.18 7.84 -52.49 -0.41 1.77 16 45 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 369.48 15.07 5.57 5.57 Total: -1.00 -31.95 369.48 -7.58 -39.53 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -6.72 Total: 2.95 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: -0.28 Total: 7.58 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 0.13 Total: -38.30 kcal Atomic # 8 Polarization: -32.33 SS G_CDS: -1.24 Total: -33.57 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.04 Total: 16.24 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.95 -7.58 -39.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174569964.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.746 kcal (2) G-P(sol) polarization free energy of solvation -31.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds