Wall clock time and date at job start Tue Mar 31 2020 13:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42890 * 109.47401 * 2 1 4 4 C 1.35987 * 117.00214 * 179.97438 * 3 2 1 5 5 C 1.38691 * 120.00081 * 359.72510 * 4 3 2 6 6 C 1.38132 * 120.00456 * 179.76226 * 5 4 3 7 7 C 1.38704 * 119.99545 * 0.51660 * 6 5 4 8 8 O 1.35976 * 120.00217 * 179.72232 * 7 6 5 9 9 C 1.42910 * 116.99877 * 0.02562 * 8 7 6 10 10 C 1.52997 * 109.47275 * 180.02562 * 9 8 7 11 11 N 1.46500 * 109.46938 * 65.00008 * 10 9 8 12 12 C 1.36939 * 120.00038 * 89.99961 * 11 10 9 13 13 H 1.07990 * 120.00175 * 359.00036 * 12 11 10 14 14 C 1.38820 * 119.99821 * 178.99772 * 12 11 10 15 15 N 1.31619 * 119.99748 * 28.17626 * 14 12 11 16 16 Si 1.86798 * 119.99810 * 208.17124 * 14 12 11 17 17 H 1.48495 * 109.46998 * 90.00331 * 16 14 12 18 18 H 1.48497 * 109.46880 * 210.00368 * 16 14 12 19 19 H 1.48504 * 109.47099 * 330.00366 * 16 14 12 20 20 C 1.46502 * 119.99924 * 270.00024 * 11 10 9 21 21 C 1.50700 * 109.47429 * 96.72854 * 20 11 10 22 22 O 1.20827 * 119.99896 * 359.97438 * 21 20 11 23 23 O 1.34223 * 120.00488 * 179.97438 * 21 20 11 24 24 C 1.45205 * 117.00479 * 179.97438 * 23 21 20 25 25 C 1.38703 * 119.99760 * 359.73690 * 7 6 5 26 26 C 1.38123 * 120.00241 * 0.02562 * 25 7 6 27 27 H 1.09000 * 109.47173 * 60.00161 * 1 2 3 28 28 H 1.09006 * 109.47193 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47417 * 299.99794 * 1 2 3 30 30 H 1.09003 * 109.47527 * 239.99609 * 2 1 3 31 31 H 1.09005 * 109.46889 * 120.00219 * 2 1 3 32 32 H 1.08003 * 119.99864 * 0.02562 * 5 4 3 33 33 H 1.07990 * 120.00546 * 180.23361 * 6 5 4 34 34 H 1.09001 * 109.46785 * 300.00067 * 9 8 7 35 35 H 1.09001 * 109.46979 * 59.99884 * 9 8 7 36 36 H 1.08996 * 109.47071 * 184.99568 * 10 9 8 37 37 H 1.09001 * 109.46984 * 305.00310 * 10 9 8 38 38 H 0.97005 * 119.99336 * 179.97438 * 15 14 12 39 39 H 1.09001 * 109.47332 * 216.72447 * 20 11 10 40 40 H 1.08994 * 109.47241 * 336.72539 * 20 11 10 41 41 H 1.08994 * 109.47546 * 179.97438 * 24 23 21 42 42 H 1.09003 * 109.46750 * 300.00430 * 24 23 21 43 43 H 1.08995 * 109.46602 * 59.99603 * 24 23 21 44 44 H 1.07997 * 119.99649 * 179.97438 * 25 7 6 45 45 H 1.07997 * 120.00109 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3545 1.5253 0.0005 5 6 4.1993 0.4254 0.0068 6 6 5.5687 0.6063 0.0024 7 6 6.0989 1.8880 0.0025 8 8 7.4470 2.0662 0.0039 9 6 8.2570 0.8888 0.0046 10 6 9.7344 1.2863 0.0067 11 7 10.0526 1.9763 1.2592 12 6 10.4798 1.2608 2.3458 13 1 10.5667 0.1861 2.2845 14 6 10.8012 1.9169 3.5262 15 7 10.2167 3.0576 3.8252 16 14 12.0631 1.1806 4.6902 17 1 13.4154 1.6810 4.3350 18 1 11.7398 1.5754 6.0848 19 1 12.0374 -0.2998 4.5761 20 6 9.9138 3.4320 1.3493 21 6 8.5801 3.7724 1.9629 22 8 7.8231 2.8897 2.2910 23 8 8.2332 5.0562 2.1451 24 6 6.9336 5.3098 2.7410 25 6 5.2540 2.9880 0.0016 26 6 3.8846 2.8070 0.0010 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 3.7865 -0.5726 0.0109 33 1 6.2266 -0.2501 0.0035 34 1 8.0387 0.2982 0.8943 35 1 8.0405 0.2983 -0.8857 36 1 10.3513 0.3921 -0.0822 37 1 9.9333 1.9502 -0.8345 38 1 10.4411 3.5159 4.6503 39 1 10.7132 3.8355 1.9707 40 1 9.9756 3.8653 0.3511 41 1 6.7792 6.3849 2.8322 42 1 6.1547 4.8827 2.1093 43 1 6.8915 4.8519 3.7292 44 1 5.6668 3.9859 0.0021 45 1 3.2268 3.6635 0.0007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174569964.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:28 Heat of formation + Delta-G solvation = -115.272074 kcal Electronic energy + Delta-G solvation = -28712.268376 eV Core-core repulsion = 24696.749459 eV Total energy + Delta-G solvation = -4015.518917 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.30185 -40.54101 -39.84597 -37.95642 -37.03496 -36.14072 -33.59882 -32.68323 -32.04221 -30.86268 -29.61868 -28.84151 -27.58751 -25.66146 -24.92305 -23.52981 -22.48585 -22.07428 -21.40079 -19.46327 -18.95414 -18.37573 -17.87204 -17.47367 -17.11358 -16.99830 -16.72814 -16.41145 -16.23073 -15.80433 -15.41894 -15.11485 -14.93911 -14.58407 -14.41263 -14.16309 -14.05392 -13.78838 -13.50000 -13.41699 -13.19574 -12.99334 -12.87977 -12.78705 -12.60797 -12.48946 -12.33157 -12.12973 -12.01714 -11.94798 -11.72109 -11.54189 -11.17228 -11.08308 -10.72497 -10.34163 -10.04422 -9.05023 -8.58367 -7.94273 -5.14677 0.28398 0.56944 1.49230 1.52185 1.58935 2.28791 2.34493 2.43560 2.58554 2.65649 2.81191 3.26686 3.57799 3.77409 3.85407 4.05822 4.16250 4.22544 4.34652 4.37914 4.38046 4.43680 4.47898 4.49617 4.52840 4.57356 4.65806 4.73344 4.75332 4.91573 4.94560 4.94706 5.00447 5.14759 5.18971 5.19627 5.33211 5.34022 5.43020 5.65906 5.67446 6.16201 6.24968 6.44733 6.72439 7.06027 7.71693 7.93539 8.21514 9.15278 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.016824 B = 0.003570 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.888237 B = 7841.101743 C = 8304.915151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.044 3.956 3 O -0.331 6.331 4 C 0.072 3.928 5 C -0.165 4.165 6 C -0.186 4.186 7 C 0.105 3.895 8 O -0.308 6.308 9 C 0.047 3.953 10 C 0.143 3.857 11 N -0.580 5.580 12 C -0.252 4.252 13 H 0.084 0.916 14 C -0.048 4.048 15 N -0.923 5.923 16 Si 0.962 3.038 17 H -0.282 1.282 18 H -0.309 1.309 19 H -0.274 1.274 20 C 0.191 3.809 21 C 0.476 3.524 22 O -0.520 6.520 23 O -0.395 6.395 24 C 0.046 3.954 25 C -0.130 4.130 26 C -0.114 4.114 27 H 0.066 0.934 28 H 0.099 0.901 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.149 0.851 33 H 0.133 0.867 34 H 0.030 0.970 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.076 0.924 38 H 0.247 0.753 39 H 0.087 0.913 40 H 0.075 0.925 41 H 0.119 0.881 42 H 0.048 0.952 43 H 0.027 0.973 44 H 0.127 0.873 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.778 -3.070 -10.740 16.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.031 4.031 3 O -0.246 6.246 4 C 0.027 3.973 5 C -0.184 4.184 6 C -0.204 4.204 7 C 0.059 3.941 8 O -0.221 6.221 9 C -0.030 4.030 10 C 0.017 3.983 11 N -0.300 5.300 12 C -0.381 4.381 13 H 0.101 0.899 14 C -0.242 4.242 15 N -0.570 5.570 16 Si 0.792 3.208 17 H -0.209 1.209 18 H -0.237 1.237 19 H -0.199 1.199 20 C 0.062 3.938 21 C 0.317 3.683 22 O -0.405 6.405 23 O -0.313 6.313 24 C -0.049 4.049 25 C -0.149 4.149 26 C -0.133 4.133 27 H 0.085 0.915 28 H 0.118 0.882 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.166 0.834 33 H 0.151 0.849 34 H 0.049 0.951 35 H 0.091 0.909 36 H 0.114 0.886 37 H 0.095 0.905 38 H 0.057 0.943 39 H 0.105 0.895 40 H 0.093 0.907 41 H 0.137 0.863 42 H 0.067 0.933 43 H 0.046 0.954 44 H 0.145 0.855 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -13.023 -2.977 -10.508 16.996 hybrid contribution 0.350 -0.733 1.505 1.710 sum -12.673 -3.710 -9.003 15.982 Atomic orbital electron populations 1.21788 0.91189 1.04148 1.03229 1.23024 0.97075 0.81131 1.01862 1.86029 1.18203 1.30855 1.89526 1.18855 0.82830 0.94027 1.01570 1.21197 0.92908 0.99023 1.05256 1.21189 0.96200 0.96218 1.06832 1.19205 0.83964 0.94065 0.96855 1.86092 1.13617 1.34715 1.87719 1.23626 0.93588 0.86453 0.99353 1.21347 0.90377 0.98455 0.88083 1.44412 1.74283 1.01891 1.09408 1.19526 1.34953 0.91905 0.91764 0.89866 1.25347 1.01804 0.98151 0.98913 1.70048 1.41620 1.20444 1.24877 0.85328 0.80357 0.78035 0.77063 1.20921 1.23651 1.19876 1.20520 0.90907 0.84733 0.97623 1.25205 0.89254 0.78940 0.74941 1.90416 1.53139 1.48927 1.48060 1.86491 1.37420 1.32046 1.75323 1.22996 0.82962 1.02416 0.96499 1.20258 0.91884 0.97717 1.05032 1.20338 0.93669 0.95822 1.03431 0.91534 0.88197 0.92013 0.91196 0.92035 0.83362 0.84943 0.95139 0.90914 0.88618 0.90532 0.94297 0.89548 0.90665 0.86325 0.93325 0.95426 0.85546 0.83297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 10.28 71.98 0.74 -1.18 16 2 C 0.04 0.80 5.46 71.98 0.39 1.19 16 3 O -0.33 -8.61 10.14 -93.41 -0.95 -9.56 16 4 C 0.07 2.12 6.69 22.49 0.15 2.27 16 5 C -0.17 -4.75 9.03 22.35 0.20 -4.55 16 6 C -0.19 -6.14 9.03 22.36 0.20 -5.94 16 7 C 0.11 3.94 6.38 22.49 0.14 4.08 16 8 O -0.31 -12.42 6.68 -71.77 -0.48 -12.90 16 9 C 0.05 1.72 4.84 71.98 0.35 2.07 16 10 C 0.14 5.21 6.11 86.38 0.53 5.73 16 11 N -0.58 -27.13 2.05 -706.36 -1.45 -28.58 16 12 C -0.25 -13.13 9.49 84.04 0.80 -12.33 16 13 H 0.08 4.20 7.97 -2.92 -0.02 4.18 16 14 C -0.05 -2.57 4.98 84.86 0.42 -2.15 16 15 N -0.92 -52.84 8.78 21.65 0.19 -52.64 16 16 Si 0.96 44.40 29.64 68.60 2.03 46.43 16 17 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 18 H -0.31 -14.86 7.11 99.48 0.71 -14.15 16 19 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 20 C 0.19 9.04 5.46 85.63 0.47 9.50 16 21 C 0.48 23.73 4.98 71.24 0.35 24.09 16 22 O -0.52 -28.45 13.11 29.10 0.38 -28.07 16 23 O -0.39 -17.99 10.56 -51.35 -0.54 -18.53 16 24 C 0.05 1.72 10.56 113.37 1.20 2.92 16 25 C -0.13 -4.50 9.98 22.35 0.22 -4.28 16 26 C -0.11 -3.46 9.98 22.35 0.22 -3.24 16 27 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.10 0.83 8.14 -2.38 -0.02 0.81 16 29 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.07 1.11 7.67 -2.39 -0.02 1.09 16 31 H 0.06 1.09 7.65 -2.38 -0.02 1.07 16 32 H 0.15 3.34 6.29 -2.91 -0.02 3.33 16 33 H 0.13 4.08 6.29 -2.92 -0.02 4.06 16 34 H 0.03 1.29 7.66 -2.39 -0.02 1.27 16 35 H 0.07 2.11 7.66 -2.39 -0.02 2.09 16 36 H 0.10 3.07 8.04 -2.39 -0.02 3.05 16 37 H 0.08 2.44 7.85 -2.39 -0.02 2.42 16 38 H 0.25 14.13 8.31 -92.70 -0.77 13.36 16 39 H 0.09 4.49 6.22 -2.39 -0.01 4.48 16 40 H 0.08 3.06 7.82 -2.39 -0.02 3.05 16 41 H 0.12 3.37 8.14 -2.39 -0.02 3.35 16 42 H 0.05 1.77 7.91 -2.39 -0.02 1.75 16 43 H 0.03 1.14 8.13 -2.39 -0.02 1.12 16 44 H 0.13 4.30 7.84 -2.91 -0.02 4.28 16 45 H 0.15 3.79 8.06 -2.91 -0.02 3.77 16 Total: -1.00 -69.59 369.48 6.56 -63.03 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: 0.98 Total: 22.64 kcal Atomic # 6 Polarization: 11.79 SS G_CDS: 6.39 Total: 18.18 kcal Atomic # 7 Polarization: -79.97 SS G_CDS: -1.26 Total: -81.22 kcal Atomic # 8 Polarization: -67.48 SS G_CDS: -1.59 Total: -69.07 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -69.59 6.56 -63.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174569964.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.240 kcal (2) G-P(sol) polarization free energy of solvation -69.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds