Wall clock time and date at job start Tue Mar 31 2020 14:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45190 * 1 3 3 C 1.34234 * 117.00391 * 2 1 4 4 O 1.20823 * 119.99678 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00091 * 180.02562 * 3 2 1 6 6 N 1.46505 * 109.47013 * 180.02562 * 5 3 2 7 7 C 1.37098 * 119.99947 * 270.00068 * 6 5 3 8 8 H 1.07997 * 120.00225 * 139.27249 * 7 6 5 9 9 C 1.38956 * 120.00009 * 319.27482 * 7 6 5 10 10 N 1.31411 * 119.99772 * 338.93900 * 9 7 6 11 11 Si 1.86794 * 119.99927 * 158.93722 * 9 7 6 12 12 H 1.48502 * 109.47385 * 60.00311 * 11 9 7 13 13 H 1.48501 * 109.47022 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47384 * 299.99888 * 11 9 7 15 15 C 1.34768 * 119.99959 * 90.00095 * 6 5 3 16 16 O 1.21294 * 120.00254 * 5.49540 * 15 6 5 17 17 C 1.50707 * 119.99900 * 185.49981 * 15 6 5 18 18 H 1.09000 * 109.47015 * 35.95180 * 17 15 6 19 19 C 1.53004 * 109.46892 * 275.95089 * 17 15 6 20 20 C 1.52998 * 109.47089 * 155.95409 * 17 15 6 21 21 C 1.50700 * 109.46873 * 184.99750 * 20 17 15 22 22 C 1.39872 * 126.04130 * 269.68787 * 21 20 17 23 23 C 1.50692 * 125.89688 * 0.02562 * 22 21 20 24 24 N 1.30841 * 108.19972 * 179.82135 * 22 21 20 25 25 N 1.40078 * 108.20605 * 0.43795 * 24 22 21 26 26 H 0.97004 * 126.03570 * 179.70179 * 25 24 22 27 27 C 1.34945 * 107.92693 * 359.71923 * 25 24 22 28 28 C 1.50704 * 126.12607 * 180.02562 * 27 25 24 29 29 H 1.09003 * 109.47298 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47092 * 299.99519 * 1 2 3 31 31 H 1.08998 * 109.47444 * 59.99430 * 1 2 3 32 32 H 1.08999 * 109.47229 * 60.00751 * 5 3 2 33 33 H 1.08996 * 109.47310 * 299.99980 * 5 3 2 34 34 H 0.97002 * 119.99966 * 185.05941 * 10 9 7 35 35 H 1.09003 * 109.46970 * 55.82095 * 19 17 15 36 36 H 1.08996 * 109.47150 * 175.81805 * 19 17 15 37 37 H 1.08999 * 109.47032 * 295.82475 * 19 17 15 38 38 H 1.08997 * 109.47272 * 304.99662 * 20 17 15 39 39 H 1.08994 * 109.47318 * 64.99706 * 20 17 15 40 40 H 1.09005 * 109.47265 * 90.00038 * 23 22 21 41 41 H 1.09002 * 109.47268 * 209.99808 * 23 22 21 42 42 H 1.08998 * 109.47250 * 329.99837 * 23 22 21 43 43 H 1.09004 * 109.47157 * 269.98113 * 28 27 25 44 44 H 1.08998 * 109.47451 * 29.97525 * 28 27 25 45 45 H 1.09001 * 109.47080 * 149.97860 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9817 2.6797 0.0002 7 6 4.1756 3.3378 -1.1868 8 1 3.8410 4.3585 -1.2993 9 6 4.8026 2.6916 -2.2452 10 7 5.5651 1.6458 -2.0176 11 14 4.5615 3.3094 -3.9914 12 1 5.0421 4.7109 -4.0915 13 1 5.3309 2.4536 -4.9299 14 1 3.1193 3.2545 -4.3413 15 6 4.1733 3.3251 1.1676 16 8 4.0995 2.7184 2.2153 17 6 4.4792 4.8008 1.1714 18 1 3.9238 5.2890 0.3707 19 6 5.9790 5.0112 0.9538 20 6 4.0698 5.4030 2.5170 21 6 4.2611 6.8973 2.4775 22 6 5.4220 7.5882 2.8401 23 6 6.7010 6.9664 3.3383 24 7 5.2070 8.8672 2.6677 25 7 3.8972 9.0316 2.1989 26 1 3.4679 9.8758 1.9893 27 6 3.3382 7.8082 2.0907 28 6 1.9372 7.5097 1.6223 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 3.9557 0.7810 -0.8909 33 1 3.9564 0.7805 0.8891 34 1 6.0609 1.2394 -2.7455 35 1 6.2850 4.5179 0.0312 36 1 6.1896 6.0783 0.8823 37 1 6.5309 4.5873 1.7927 38 1 3.0219 5.1760 2.7129 39 1 4.6875 4.9784 3.3082 40 1 7.3523 6.7474 2.4921 41 1 7.2031 7.6595 4.0134 42 1 6.4729 6.0425 3.8699 43 1 1.2612 7.5064 2.4774 44 1 1.6210 8.2738 0.9122 45 1 1.9161 6.5331 1.1386 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175051265.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:38 Heat of formation + Delta-G solvation = -56.850159 kcal Electronic energy + Delta-G solvation = -28738.914860 eV Core-core repulsion = 24758.222059 eV Total energy + Delta-G solvation = -3980.692801 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.20310 -39.80514 -38.60495 -35.85375 -34.82468 -34.34609 -33.16569 -31.63426 -30.90127 -28.72247 -28.24830 -27.08892 -26.38415 -25.40558 -24.81261 -22.32712 -20.41775 -19.89217 -19.17027 -18.69584 -17.17344 -16.95037 -16.88931 -16.28417 -15.70492 -15.32151 -15.08204 -14.64929 -14.28907 -14.19680 -13.66033 -13.29453 -13.27487 -13.23412 -12.80462 -12.78054 -12.66057 -12.33370 -12.24826 -11.96829 -11.85577 -11.66946 -11.53527 -11.43535 -11.31522 -11.19647 -10.88730 -10.76687 -10.47619 -10.43365 -10.25003 -10.22379 -10.00211 -9.71973 -9.22765 -9.03289 -8.49642 -8.02015 -7.61200 -6.47588 -4.16507 2.03605 2.93213 3.02629 3.05403 3.09519 3.17927 3.20755 3.25652 3.90236 4.14183 4.68859 4.82249 4.89567 4.93736 5.17905 5.43396 5.47609 5.49672 5.55551 5.60318 5.63973 5.70950 5.81048 5.87782 5.90563 5.95571 6.04494 6.10425 6.17160 6.23916 6.32911 6.47133 6.53877 6.62698 6.68850 6.74418 6.92971 6.98966 7.01503 7.10471 7.42625 7.46640 7.79138 7.90126 8.24352 8.57158 9.00014 9.37396 9.81464 10.57204 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011639 B = 0.004509 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2405.151321 B = 6207.658059 C = 7072.129872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.369 6.369 3 C 0.445 3.555 4 O -0.506 6.506 5 C 0.123 3.877 6 N -0.427 5.427 7 C -0.333 4.333 8 H 0.090 0.910 9 C 0.046 3.954 10 N -0.863 5.863 11 Si 0.912 3.088 12 H -0.270 1.270 13 H -0.282 1.282 14 H -0.273 1.273 15 C 0.498 3.502 16 O -0.599 6.599 17 C -0.079 4.079 18 H 0.084 0.916 19 C -0.130 4.130 20 C -0.023 4.023 21 C -0.216 4.216 22 C 0.088 3.912 23 C -0.077 4.077 24 N -0.305 5.305 25 N -0.482 5.482 26 H 0.433 0.567 27 C 0.085 3.915 28 C -0.095 4.095 29 H 0.092 0.908 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.138 0.862 33 H 0.102 0.898 34 H 0.273 0.727 35 H 0.072 0.928 36 H 0.051 0.949 37 H 0.049 0.951 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.067 0.933 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.212 5.766 3.884 8.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.286 6.286 3 C 0.287 3.713 4 O -0.392 6.392 5 C -0.003 4.003 6 N -0.146 5.146 7 C -0.461 4.461 8 H 0.108 0.892 9 C -0.160 4.160 10 N -0.499 5.499 11 Si 0.738 3.262 12 H -0.195 1.195 13 H -0.208 1.208 14 H -0.198 1.198 15 C 0.288 3.712 16 O -0.484 6.484 17 C -0.100 4.100 18 H 0.103 0.897 19 C -0.188 4.188 20 C -0.062 4.062 21 C -0.227 4.227 22 C -0.078 4.078 23 C -0.136 4.136 24 N -0.129 5.129 25 N -0.191 5.191 26 H 0.276 0.724 27 C -0.043 4.043 28 C -0.153 4.153 29 H 0.110 0.890 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.155 0.845 33 H 0.120 0.880 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.082 0.918 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.099 0.901 43 H 0.096 0.904 44 H 0.086 0.914 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.900 6.727 4.354 8.912 hybrid contribution -1.060 0.060 -1.391 1.750 sum -4.960 6.786 2.963 8.913 Atomic orbital electron populations 1.23081 0.78218 1.02588 1.01918 1.86559 1.22135 1.34981 1.84937 1.25434 0.93670 0.80809 0.71421 1.90557 1.67059 1.36402 1.45165 1.20937 0.84038 0.88505 1.06790 1.42947 1.57680 1.08476 1.05505 1.19297 1.38821 0.99279 0.88723 0.89226 1.25389 0.94076 0.96297 1.00266 1.69828 1.24116 1.22513 1.33439 0.86232 0.78785 0.79077 0.82117 1.19542 1.20779 1.19824 1.20535 0.77865 0.89536 0.83306 1.90520 1.56478 1.69102 1.32301 1.20906 0.98598 0.92868 0.97665 0.89734 1.21677 0.93779 1.00695 1.02660 1.19746 1.01668 0.87559 0.97252 1.19813 0.93659 0.96679 1.12516 1.22187 0.96735 0.90449 0.98444 1.20310 0.91705 1.00180 1.01360 1.77199 0.95106 1.18323 1.22267 1.46054 1.10841 1.07193 1.54991 0.72366 1.20879 0.96732 0.85666 1.01017 1.20486 0.89477 1.03950 1.01395 0.88957 0.92565 0.92528 0.84517 0.88034 0.91620 0.90878 0.93050 0.93208 0.91762 0.90666 0.90079 0.91468 0.90089 0.90422 0.91359 0.88932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.56 101.05 1.07 1.60 16 2 O -0.37 -7.06 10.56 -39.27 -0.41 -7.47 16 3 C 0.44 9.94 8.02 36.00 0.29 10.23 16 4 O -0.51 -12.28 16.18 -18.75 -0.30 -12.58 16 5 C 0.12 2.87 5.64 -5.19 -0.03 2.84 16 6 N -0.43 -10.44 1.98 -116.09 -0.23 -10.67 16 7 C -0.33 -8.19 7.81 -14.93 -0.12 -8.30 16 8 H 0.09 2.17 6.58 -52.49 -0.35 1.82 16 9 C 0.05 1.11 4.93 -17.47 -0.09 1.03 16 10 N -0.86 -21.53 11.68 55.50 0.65 -20.88 16 11 Si 0.91 19.15 29.61 -169.99 -5.03 14.12 16 12 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 13 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 14 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 15 C 0.50 11.76 6.75 -10.99 -0.07 11.69 16 16 O -0.60 -15.25 15.73 5.55 0.09 -15.17 16 17 C -0.08 -1.56 2.02 -91.77 -0.18 -1.75 16 18 H 0.08 1.72 6.61 -51.93 -0.34 1.37 16 19 C -0.13 -2.41 7.69 37.16 0.29 -2.13 16 20 C -0.02 -0.41 4.03 -27.88 -0.11 -0.52 16 21 C -0.22 -3.43 4.77 -105.05 -0.50 -3.93 16 22 C 0.09 1.36 6.31 -82.41 -0.52 0.84 16 23 C -0.08 -0.99 9.14 36.00 0.33 -0.66 16 24 N -0.31 -4.75 12.70 33.67 0.43 -4.32 16 25 N -0.48 -6.37 7.36 33.48 0.25 -6.12 16 26 H 0.43 4.19 8.96 -182.61 -1.64 2.56 16 27 C 0.08 1.19 7.21 -82.26 -0.59 0.60 16 28 C -0.09 -1.09 10.04 36.01 0.36 -0.73 16 29 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 31 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 32 H 0.14 3.27 5.75 -51.93 -0.30 2.98 16 33 H 0.10 2.33 7.35 -51.93 -0.38 1.95 16 34 H 0.27 6.48 8.32 -40.82 -0.34 6.14 16 35 H 0.07 1.51 7.40 -51.93 -0.38 1.13 16 36 H 0.05 0.87 5.82 -51.93 -0.30 0.56 16 37 H 0.05 0.88 8.00 -51.93 -0.42 0.46 16 38 H 0.06 1.16 7.77 -51.93 -0.40 0.76 16 39 H 0.07 1.34 7.14 -51.93 -0.37 0.97 16 40 H 0.08 1.01 7.01 -51.93 -0.36 0.65 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.08 1.01 7.25 -51.93 -0.38 0.63 16 43 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.09 1.23 7.78 -51.93 -0.40 0.83 16 LS Contribution 372.60 15.07 5.62 5.62 Total: -1.00 -31.15 372.60 -6.54 -37.69 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -7.70 Total: 8.98 kcal Atomic # 6 Polarization: 10.69 SS G_CDS: 0.11 Total: 10.81 kcal Atomic # 7 Polarization: -43.09 SS G_CDS: 1.09 Total: -42.00 kcal Atomic # 8 Polarization: -34.59 SS G_CDS: -0.63 Total: -35.22 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.12 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.15 -6.54 -37.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175051265.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.156 kcal (2) G-P(sol) polarization free energy of solvation -31.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds