Wall clock time and date at job start Tue Mar 31 2020 14:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45190 * 1 3 3 C 1.34234 * 117.00391 * 2 1 4 4 O 1.20823 * 119.99678 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00091 * 180.02562 * 3 2 1 6 6 N 1.46505 * 109.47013 * 180.02562 * 5 3 2 7 7 C 1.37098 * 119.99947 * 270.00068 * 6 5 3 8 8 H 1.07997 * 120.00225 * 139.27249 * 7 6 5 9 9 C 1.38956 * 120.00009 * 319.27482 * 7 6 5 10 10 N 1.31411 * 119.99772 * 338.93900 * 9 7 6 11 11 Si 1.86794 * 119.99927 * 158.93722 * 9 7 6 12 12 H 1.48502 * 109.47385 * 60.00311 * 11 9 7 13 13 H 1.48501 * 109.47022 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47384 * 299.99888 * 11 9 7 15 15 C 1.34768 * 119.99959 * 90.00095 * 6 5 3 16 16 O 1.21294 * 120.00254 * 5.49540 * 15 6 5 17 17 C 1.50707 * 119.99900 * 185.49981 * 15 6 5 18 18 H 1.09000 * 109.47015 * 35.95180 * 17 15 6 19 19 C 1.53004 * 109.46892 * 275.95089 * 17 15 6 20 20 C 1.52998 * 109.47089 * 155.95409 * 17 15 6 21 21 C 1.50700 * 109.46873 * 184.99750 * 20 17 15 22 22 C 1.39872 * 126.04130 * 269.68787 * 21 20 17 23 23 C 1.50692 * 125.89688 * 0.02562 * 22 21 20 24 24 N 1.30841 * 108.19972 * 179.82135 * 22 21 20 25 25 N 1.40078 * 108.20605 * 0.43795 * 24 22 21 26 26 H 0.97004 * 126.03570 * 179.70179 * 25 24 22 27 27 C 1.34945 * 107.92693 * 359.71923 * 25 24 22 28 28 C 1.50704 * 126.12607 * 180.02562 * 27 25 24 29 29 H 1.09003 * 109.47298 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47092 * 299.99519 * 1 2 3 31 31 H 1.08998 * 109.47444 * 59.99430 * 1 2 3 32 32 H 1.08999 * 109.47229 * 60.00751 * 5 3 2 33 33 H 1.08996 * 109.47310 * 299.99980 * 5 3 2 34 34 H 0.97002 * 119.99966 * 185.05941 * 10 9 7 35 35 H 1.09003 * 109.46970 * 55.82095 * 19 17 15 36 36 H 1.08996 * 109.47150 * 175.81805 * 19 17 15 37 37 H 1.08999 * 109.47032 * 295.82475 * 19 17 15 38 38 H 1.08997 * 109.47272 * 304.99662 * 20 17 15 39 39 H 1.08994 * 109.47318 * 64.99706 * 20 17 15 40 40 H 1.09005 * 109.47265 * 90.00038 * 23 22 21 41 41 H 1.09002 * 109.47268 * 209.99808 * 23 22 21 42 42 H 1.08998 * 109.47250 * 329.99837 * 23 22 21 43 43 H 1.09004 * 109.47157 * 269.98113 * 28 27 25 44 44 H 1.08998 * 109.47451 * 29.97525 * 28 27 25 45 45 H 1.09001 * 109.47080 * 149.97860 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9817 2.6797 0.0002 7 6 4.1756 3.3378 -1.1868 8 1 3.8410 4.3585 -1.2993 9 6 4.8026 2.6916 -2.2452 10 7 5.5651 1.6458 -2.0176 11 14 4.5615 3.3094 -3.9914 12 1 5.0421 4.7109 -4.0915 13 1 5.3309 2.4536 -4.9299 14 1 3.1193 3.2545 -4.3413 15 6 4.1733 3.3251 1.1676 16 8 4.0995 2.7184 2.2153 17 6 4.4792 4.8008 1.1714 18 1 3.9238 5.2890 0.3707 19 6 5.9790 5.0112 0.9538 20 6 4.0698 5.4030 2.5170 21 6 4.2611 6.8973 2.4775 22 6 5.4220 7.5882 2.8401 23 6 6.7010 6.9664 3.3383 24 7 5.2070 8.8672 2.6677 25 7 3.8972 9.0316 2.1989 26 1 3.4679 9.8758 1.9893 27 6 3.3382 7.8082 2.0907 28 6 1.9372 7.5097 1.6223 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 3.9557 0.7810 -0.8909 33 1 3.9564 0.7805 0.8891 34 1 6.0609 1.2394 -2.7455 35 1 6.2850 4.5179 0.0312 36 1 6.1896 6.0783 0.8823 37 1 6.5309 4.5873 1.7927 38 1 3.0219 5.1760 2.7129 39 1 4.6875 4.9784 3.3082 40 1 7.3523 6.7474 2.4921 41 1 7.2031 7.6595 4.0134 42 1 6.4729 6.0425 3.8699 43 1 1.2612 7.5064 2.4774 44 1 1.6210 8.2738 0.9122 45 1 1.9161 6.5331 1.1386 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175051265.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:37 Heat of formation + Delta-G solvation = -75.121735 kcal Electronic energy + Delta-G solvation = -28739.707175 eV Core-core repulsion = 24758.222059 eV Total energy + Delta-G solvation = -3981.485116 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.35485 -41.53360 -40.36493 -37.53042 -36.61902 -35.91649 -34.25052 -33.52273 -32.18296 -30.27739 -29.44506 -28.21198 -27.83917 -26.84645 -26.54633 -23.90056 -22.04002 -21.06783 -20.86272 -20.02826 -18.68024 -18.65046 -18.43765 -17.86661 -17.31286 -17.00459 -16.53901 -16.31127 -15.86173 -15.71935 -14.98873 -14.86292 -14.55354 -14.41422 -14.29977 -14.15843 -13.98405 -13.61793 -13.42101 -13.33779 -13.13677 -13.09962 -13.06564 -12.91618 -12.82648 -12.67248 -12.58413 -12.54409 -12.11811 -11.94582 -11.75747 -11.67264 -11.51258 -11.36274 -11.07010 -10.32656 -10.12838 -9.50589 -9.23571 -8.33570 -6.08250 0.91873 1.27560 1.41541 1.48348 1.54433 1.59904 1.77463 2.01707 2.11657 2.38957 2.96543 3.05651 3.77489 3.79886 4.06394 4.13669 4.17544 4.24525 4.31040 4.33047 4.38189 4.44156 4.53326 4.64990 4.66244 4.69450 4.78188 4.80000 4.83991 4.86663 5.03214 5.05847 5.13052 5.15155 5.22946 5.27477 5.36330 5.46340 5.51527 5.57021 5.78779 5.94334 6.35767 6.48728 6.79050 6.84322 7.11336 7.50628 7.94903 8.71867 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011639 B = 0.004509 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2405.151321 B = 6207.658059 C = 7072.129872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.369 6.369 3 C 0.450 3.550 4 O -0.529 6.529 5 C 0.120 3.880 6 N -0.437 5.437 7 C -0.346 4.346 8 H 0.089 0.911 9 C 0.013 3.987 10 N -0.886 5.886 11 Si 0.970 3.030 12 H -0.262 1.262 13 H -0.278 1.278 14 H -0.276 1.276 15 C 0.485 3.515 16 O -0.625 6.625 17 C -0.071 4.071 18 H 0.078 0.922 19 C -0.116 4.116 20 C -0.007 4.007 21 C -0.244 4.244 22 C 0.082 3.918 23 C -0.078 4.078 24 N -0.325 5.325 25 N -0.470 5.470 26 H 0.449 0.551 27 C 0.095 3.905 28 C -0.093 4.093 29 H 0.137 0.863 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.130 0.870 33 H 0.097 0.903 34 H 0.277 0.723 35 H 0.047 0.953 36 H 0.069 0.931 37 H 0.054 0.946 38 H 0.053 0.947 39 H 0.068 0.932 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.095 0.905 44 H 0.094 0.906 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.046 6.798 3.288 9.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.285 6.285 3 C 0.293 3.707 4 O -0.418 6.418 5 C -0.006 4.006 6 N -0.155 5.155 7 C -0.474 4.474 8 H 0.107 0.893 9 C -0.191 4.191 10 N -0.523 5.523 11 Si 0.794 3.206 12 H -0.187 1.187 13 H -0.203 1.203 14 H -0.202 1.202 15 C 0.276 3.724 16 O -0.512 6.512 17 C -0.092 4.092 18 H 0.096 0.904 19 C -0.174 4.174 20 C -0.046 4.046 21 C -0.255 4.255 22 C -0.084 4.084 23 C -0.136 4.136 24 N -0.149 5.149 25 N -0.180 5.180 26 H 0.295 0.705 27 C -0.034 4.034 28 C -0.152 4.152 29 H 0.155 0.845 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.147 0.853 33 H 0.115 0.885 34 H 0.087 0.913 35 H 0.066 0.934 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.103 0.897 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.113 0.887 44 H 0.113 0.887 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.738 7.764 3.753 9.840 hybrid contribution -0.896 -0.335 -1.180 1.519 sum -5.634 7.429 2.573 9.672 Atomic orbital electron populations 1.23516 0.75221 1.05638 1.02122 1.86516 1.24928 1.32913 1.84161 1.25051 0.93288 0.81365 0.71009 1.90535 1.67471 1.37347 1.46448 1.20856 0.85272 0.88299 1.06140 1.43145 1.57736 1.08771 1.05846 1.19448 1.39294 0.99562 0.89087 0.89306 1.26048 0.93471 0.96421 1.03130 1.69902 1.24586 1.23350 1.34463 0.85342 0.78286 0.78990 0.78018 1.18695 1.20257 1.20192 1.21251 0.77309 0.91067 0.82784 1.90484 1.57699 1.70032 1.32995 1.20883 0.99243 0.90232 0.98851 0.90394 1.21545 0.92843 1.01517 1.01471 1.19491 1.00706 0.88911 0.95506 1.19723 0.94977 0.95784 1.15036 1.22494 0.97311 0.90440 0.98187 1.20379 0.91015 1.00473 1.01777 1.77159 0.96231 1.18349 1.23154 1.46064 1.10183 1.07746 1.53992 0.70459 1.21191 0.97331 0.85607 0.99301 1.20553 0.88363 1.03672 1.02563 0.84505 0.92409 0.92351 0.85302 0.88483 0.91338 0.93355 0.91243 0.92695 0.92783 0.91341 0.89721 0.89970 0.90039 0.88682 0.88682 0.90928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 10.56 113.37 1.20 1.97 16 2 O -0.37 -13.83 10.56 -51.45 -0.54 -14.38 16 3 C 0.45 20.29 8.02 71.23 0.57 20.86 16 4 O -0.53 -25.91 16.18 21.97 0.36 -25.56 16 5 C 0.12 5.75 5.64 85.63 0.48 6.23 16 6 N -0.44 -21.84 1.98 -639.60 -1.27 -23.10 16 7 C -0.35 -17.22 7.81 84.04 0.66 -16.57 16 8 H 0.09 4.35 6.58 -2.91 -0.02 4.33 16 9 C 0.01 0.65 4.93 84.93 0.42 1.07 16 10 N -0.89 -44.57 11.68 21.67 0.25 -44.32 16 11 Si 0.97 38.84 29.61 68.60 2.03 40.87 16 12 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 13 H -0.28 -10.83 7.11 99.48 0.71 -10.12 16 14 H -0.28 -11.19 7.11 99.48 0.71 -10.48 16 15 C 0.48 23.51 6.75 87.66 0.59 24.11 16 16 O -0.63 -32.73 15.73 -3.07 -0.05 -32.78 16 17 C -0.07 -2.85 2.02 -11.54 -0.02 -2.87 16 18 H 0.08 3.21 6.61 -2.39 -0.02 3.20 16 19 C -0.12 -4.32 7.69 71.98 0.55 -3.76 16 20 C -0.01 -0.25 4.03 29.85 0.12 -0.13 16 21 C -0.24 -7.57 4.77 -20.14 -0.10 -7.67 16 22 C 0.08 2.43 6.31 43.10 0.27 2.70 16 23 C -0.08 -1.93 9.14 71.23 0.65 -1.28 16 24 N -0.32 -9.59 12.70 -47.39 -0.60 -10.19 16 25 N -0.47 -11.44 7.36 -48.00 -0.35 -11.79 16 26 H 0.45 7.56 8.96 -213.33 -1.91 5.64 16 27 C 0.09 2.52 7.21 41.41 0.30 2.82 16 28 C -0.09 -1.98 10.04 71.24 0.71 -1.26 16 29 H 0.14 2.52 8.14 -2.39 -0.02 2.50 16 30 H 0.06 1.58 8.13 -2.38 -0.02 1.56 16 31 H 0.06 1.59 8.13 -2.39 -0.02 1.57 16 32 H 0.13 6.34 5.75 -2.39 -0.01 6.32 16 33 H 0.10 4.63 7.35 -2.39 -0.02 4.62 16 34 H 0.28 13.12 8.32 -92.71 -0.77 12.35 16 35 H 0.05 2.02 7.40 -2.39 -0.02 2.00 16 36 H 0.07 2.30 5.82 -2.39 -0.01 2.29 16 37 H 0.05 1.95 8.00 -2.39 -0.02 1.93 16 38 H 0.05 1.99 7.77 -2.39 -0.02 1.97 16 39 H 0.07 2.48 7.14 -2.39 -0.02 2.46 16 40 H 0.08 2.01 7.01 -2.38 -0.02 2.00 16 41 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.08 1.98 7.25 -2.39 -0.02 1.97 16 43 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 44 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.07 1.88 7.78 -2.39 -0.02 1.87 16 Total: -1.00 -66.93 372.60 5.35 -61.58 By element: Atomic # 1 Polarization: 34.33 SS G_CDS: -0.88 Total: 33.45 kcal Atomic # 6 Polarization: 19.80 SS G_CDS: 6.41 Total: 26.21 kcal Atomic # 7 Polarization: -87.43 SS G_CDS: -1.97 Total: -89.40 kcal Atomic # 8 Polarization: -72.48 SS G_CDS: -0.24 Total: -72.72 kcal Atomic # 14 Polarization: 38.84 SS G_CDS: 2.03 Total: 40.87 kcal Total: -66.93 5.35 -61.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175051265.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.540 kcal (2) G-P(sol) polarization free energy of solvation -66.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds