Wall clock time and date at job start Tue Mar 31 2020 14:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34232 * 116.99677 * 2 1 4 4 O 1.20825 * 119.99863 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99879 * 179.97438 * 3 2 1 6 6 N 1.46499 * 109.46793 * 180.02562 * 5 3 2 7 7 C 1.37104 * 119.99766 * 264.30431 * 6 5 3 8 8 H 1.07994 * 119.99798 * 196.35734 * 7 6 5 9 9 C 1.38945 * 119.99777 * 16.35621 * 7 6 5 10 10 N 1.31409 * 120.00351 * 18.43426 * 9 7 6 11 11 Si 1.86805 * 119.99770 * 198.43758 * 9 7 6 12 12 H 1.48497 * 109.47281 * 89.99847 * 11 9 7 13 13 H 1.48507 * 109.47060 * 209.99788 * 11 9 7 14 14 H 1.48504 * 109.46888 * 329.99533 * 11 9 7 15 15 C 1.34767 * 120.00294 * 84.31069 * 6 5 3 16 16 O 1.21299 * 120.00192 * 4.62789 * 15 6 5 17 17 C 1.50707 * 120.00195 * 184.63135 * 15 6 5 18 18 H 1.09000 * 109.46848 * 322.29673 * 17 15 6 19 19 C 1.52992 * 109.47181 * 82.29523 * 17 15 6 20 20 C 1.52998 * 109.47095 * 202.29909 * 17 15 6 21 21 C 1.50699 * 109.47173 * 174.99872 * 20 17 15 22 22 C 1.39871 * 126.03943 * 269.69024 * 21 20 17 23 23 C 1.50704 * 125.89620 * 359.97438 * 22 21 20 24 24 N 1.30838 * 108.20416 * 179.81696 * 22 21 20 25 25 N 1.40083 * 108.20159 * 0.43754 * 24 22 21 26 26 H 0.97002 * 126.03631 * 179.69515 * 25 24 22 27 27 C 1.34946 * 107.92671 * 359.72143 * 25 24 22 28 28 C 1.50699 * 126.12786 * 180.02562 * 27 25 24 29 29 H 1.09001 * 109.47451 * 60.00080 * 1 2 3 30 30 H 1.08998 * 109.47127 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47577 * 300.00008 * 1 2 3 32 32 H 1.08997 * 109.46911 * 60.00077 * 5 3 2 33 33 H 1.08997 * 109.47100 * 300.00166 * 5 3 2 34 34 H 0.97008 * 120.00339 * 180.02562 * 10 9 7 35 35 H 1.09003 * 109.47115 * 60.85464 * 19 17 15 36 36 H 1.09001 * 109.47045 * 180.85068 * 19 17 15 37 37 H 1.08998 * 109.47447 * 300.85001 * 19 17 15 38 38 H 1.08999 * 109.47158 * 54.99506 * 20 17 15 39 39 H 1.09000 * 109.47166 * 294.99548 * 20 17 15 40 40 H 1.09000 * 109.46883 * 90.00348 * 23 22 21 41 41 H 1.09004 * 109.47229 * 209.99783 * 23 22 21 42 42 H 1.08997 * 109.47469 * 329.99865 * 23 22 21 43 43 H 1.09001 * 109.47375 * 269.97557 * 28 27 25 44 44 H 1.09005 * 109.46703 * 29.97662 * 28 27 25 45 45 H 1.09001 * 109.47277 * 149.97250 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2750 0.0006 6 7 3.9815 2.6799 0.0011 7 6 4.2893 3.3041 -1.1802 8 1 4.8392 4.2335 -1.1724 9 6 3.8936 2.7410 -2.3872 10 7 2.9397 1.8374 -2.4093 11 14 4.7177 3.2682 -3.9785 12 1 5.8907 2.3963 -4.2411 13 1 3.7512 3.1487 -5.0997 14 1 5.1662 4.6790 -3.8598 15 6 4.0611 3.3587 1.1626 16 8 3.8709 2.7853 2.2145 17 6 4.3865 4.8302 1.1547 18 1 5.1235 5.0351 0.3782 19 6 3.1142 5.6323 0.8748 20 6 4.9548 5.2341 2.5166 21 6 5.3940 6.6749 2.4703 22 6 6.6663 7.1365 2.1171 23 6 7.8381 6.2777 1.7166 24 7 6.6623 8.4428 2.1913 25 7 5.3884 8.8537 2.6043 26 1 5.1027 9.7696 2.7473 27 6 4.6290 7.7504 2.7687 28 6 3.1871 7.7213 3.2056 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 3.9563 0.7807 -0.8891 33 1 3.9557 0.7810 0.8908 34 1 2.6637 1.4439 -3.2519 35 1 2.3827 5.4390 1.6595 36 1 3.3523 6.6958 0.8541 37 1 2.7010 5.3337 -0.0887 38 1 5.8094 4.6012 2.7559 39 1 4.1874 5.1126 3.2811 40 1 7.8268 6.1283 0.6370 41 1 8.7660 6.7715 2.0054 42 1 7.7692 5.3122 2.2178 43 1 3.1380 7.6545 4.2925 44 1 2.6887 8.6325 2.8746 45 1 2.6915 6.8558 2.7657 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175051282.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:41 Heat of formation + Delta-G solvation = -48.536196 kcal Electronic energy + Delta-G solvation = -28906.116559 eV Core-core repulsion = 24925.784278 eV Total energy + Delta-G solvation = -3980.332281 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.23578 -39.47644 -38.43429 -35.57302 -34.64114 -34.34700 -33.28452 -31.55255 -30.77412 -28.61219 -28.10736 -27.42488 -26.26359 -25.21375 -24.77348 -22.32440 -20.18065 -19.93586 -19.15796 -18.71239 -17.04717 -16.84541 -16.57002 -16.28335 -15.41045 -15.22698 -15.11437 -14.50101 -14.18103 -14.06805 -13.73691 -13.46397 -13.21643 -13.10677 -12.72641 -12.59054 -12.46490 -12.29642 -12.13535 -12.02790 -11.89446 -11.66162 -11.48609 -11.30279 -11.21227 -11.13587 -10.75522 -10.65836 -10.54947 -10.43006 -10.19095 -9.90971 -9.80329 -9.55022 -9.05717 -8.98907 -8.45658 -8.04889 -7.92323 -6.47626 -3.97235 2.01543 2.91755 3.00497 3.09207 3.19684 3.21735 3.50969 3.72235 4.05068 4.11648 4.69125 4.80171 4.91367 5.00923 5.14627 5.46078 5.50856 5.57913 5.70404 5.74458 5.76876 5.78805 5.85029 5.92388 5.95962 5.97479 6.06305 6.14705 6.20476 6.29783 6.34564 6.42688 6.47163 6.57926 6.66763 6.73851 6.86337 6.97726 7.03714 7.38790 7.44454 7.48593 7.62678 7.87962 8.26602 9.00541 9.13015 9.40918 9.80893 10.59492 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013152 B = 0.004444 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.393288 B = 6298.515045 C = 7452.807761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.375 6.375 3 C 0.486 3.514 4 O -0.502 6.502 5 C 0.155 3.845 6 N -0.430 5.430 7 C -0.327 4.327 8 H 0.106 0.894 9 C 0.036 3.964 10 N -0.875 5.875 11 Si 0.924 3.076 12 H -0.276 1.276 13 H -0.285 1.285 14 H -0.270 1.270 15 C 0.477 3.523 16 O -0.604 6.604 17 C -0.083 4.083 18 H 0.087 0.913 19 C -0.131 4.131 20 C -0.022 4.022 21 C -0.217 4.217 22 C 0.085 3.915 23 C -0.076 4.076 24 N -0.304 5.304 25 N -0.483 5.483 26 H 0.433 0.567 27 C 0.088 3.912 28 C -0.106 4.106 29 H 0.054 0.946 30 H 0.085 0.915 31 H 0.049 0.951 32 H 0.126 0.874 33 H 0.080 0.920 34 H 0.272 0.728 35 H 0.050 0.950 36 H 0.051 0.949 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.068 0.932 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.067 0.933 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.554 5.483 5.527 7.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.293 6.293 3 C 0.328 3.672 4 O -0.387 6.387 5 C 0.029 3.971 6 N -0.148 5.148 7 C -0.455 4.455 8 H 0.123 0.877 9 C -0.168 4.168 10 N -0.514 5.514 11 Si 0.751 3.249 12 H -0.202 1.202 13 H -0.211 1.211 14 H -0.194 1.194 15 C 0.267 3.733 16 O -0.490 6.490 17 C -0.104 4.104 18 H 0.105 0.895 19 C -0.189 4.189 20 C -0.061 4.061 21 C -0.228 4.228 22 C -0.082 4.082 23 C -0.134 4.134 24 N -0.128 5.128 25 N -0.191 5.191 26 H 0.276 0.724 27 C -0.040 4.040 28 C -0.164 4.164 29 H 0.073 0.927 30 H 0.103 0.897 31 H 0.068 0.932 32 H 0.144 0.856 33 H 0.098 0.902 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.098 0.902 41 H 0.087 0.913 42 H 0.099 0.901 43 H 0.095 0.905 44 H 0.086 0.914 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.817 6.433 5.715 8.794 hybrid contribution -0.759 0.197 -1.033 1.297 sum 1.058 6.630 4.682 8.185 Atomic orbital electron populations 1.22919 0.78840 1.01757 1.01560 1.86464 1.21572 1.35590 1.85684 1.24016 0.92344 0.80494 0.70394 1.90500 1.66551 1.36372 1.45314 1.20500 0.87042 0.85958 1.03625 1.43406 1.57245 1.07949 1.06221 1.19688 1.34276 1.09271 0.82230 0.87680 1.25188 0.95011 0.97041 0.99567 1.69801 1.24835 1.28952 1.27781 0.85966 0.78880 0.79185 0.80899 1.20190 1.21094 1.19423 1.20235 0.81108 0.88552 0.83428 1.90522 1.56564 1.70397 1.31477 1.20953 0.98941 0.92699 0.97821 0.89533 1.21715 0.96202 0.98273 1.02672 1.19721 1.00519 0.88966 0.96868 1.19835 0.93483 0.96258 1.13267 1.22239 0.96084 0.91329 0.98511 1.20213 0.93156 0.97737 1.02332 1.77206 0.99000 1.13150 1.23464 1.46072 1.09023 1.07939 1.56086 0.72377 1.20836 0.94855 0.87195 1.01069 1.20751 0.88980 1.04573 1.02082 0.92672 0.89668 0.93213 0.85645 0.90183 0.91781 0.93121 0.92997 0.91181 0.91265 0.91029 0.90209 0.91315 0.90123 0.90471 0.91444 0.88145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 10.56 101.05 1.07 1.83 16 2 O -0.38 -8.09 10.57 -39.26 -0.41 -8.50 16 3 C 0.49 11.93 6.13 36.01 0.22 12.15 16 4 O -0.50 -13.66 15.85 -18.75 -0.30 -13.96 16 5 C 0.15 3.67 5.18 -5.19 -0.03 3.64 16 6 N -0.43 -10.47 2.17 -116.10 -0.25 -10.73 16 7 C -0.33 -7.94 8.72 -14.93 -0.13 -8.07 16 8 H 0.11 2.43 5.94 -52.49 -0.31 2.12 16 9 C 0.04 0.87 4.96 -17.47 -0.09 0.78 16 10 N -0.87 -22.19 9.12 55.50 0.51 -21.69 16 11 Si 0.92 19.09 29.59 -169.99 -5.03 14.06 16 12 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 13 H -0.29 -6.03 7.11 56.52 0.40 -5.63 16 14 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 15 C 0.48 11.17 6.57 -10.99 -0.07 11.10 16 16 O -0.60 -15.32 15.81 5.54 0.09 -15.23 16 17 C -0.08 -1.61 1.99 -91.77 -0.18 -1.79 16 18 H 0.09 1.69 6.28 -51.93 -0.33 1.37 16 19 C -0.13 -2.44 7.52 37.15 0.28 -2.16 16 20 C -0.02 -0.37 4.06 -27.88 -0.11 -0.49 16 21 C -0.22 -3.38 4.82 -105.05 -0.51 -3.89 16 22 C 0.08 1.30 7.22 -82.40 -0.59 0.71 16 23 C -0.08 -0.97 10.26 36.01 0.37 -0.60 16 24 N -0.30 -4.70 12.70 33.67 0.43 -4.27 16 25 N -0.48 -6.24 7.36 33.47 0.25 -5.99 16 26 H 0.43 4.07 8.96 -182.61 -1.64 2.44 16 27 C 0.09 1.20 6.27 -82.27 -0.52 0.68 16 28 C -0.11 -1.15 9.48 36.01 0.34 -0.81 16 29 H 0.05 0.99 8.13 -51.93 -0.42 0.57 16 30 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.05 0.84 8.13 -51.93 -0.42 0.42 16 32 H 0.13 2.97 6.27 -51.93 -0.33 2.65 16 33 H 0.08 1.79 7.54 -51.93 -0.39 1.40 16 34 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 35 H 0.05 0.93 6.91 -51.93 -0.36 0.57 16 36 H 0.05 0.85 5.88 -51.93 -0.31 0.54 16 37 H 0.07 1.50 7.73 -51.93 -0.40 1.09 16 38 H 0.07 1.18 7.25 -51.93 -0.38 0.81 16 39 H 0.07 1.25 7.68 -51.93 -0.40 0.86 16 40 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.08 0.98 7.25 -51.93 -0.38 0.60 16 43 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.10 1.25 4.51 -51.93 -0.23 1.02 16 LS Contribution 365.69 15.07 5.51 5.51 Total: -1.00 -32.11 365.69 -6.70 -38.82 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -7.54 Total: 8.89 kcal Atomic # 6 Polarization: 13.04 SS G_CDS: 0.05 Total: 13.09 kcal Atomic # 7 Polarization: -43.60 SS G_CDS: 0.93 Total: -42.67 kcal Atomic # 8 Polarization: -37.07 SS G_CDS: -0.62 Total: -37.69 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.03 Total: 14.06 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.11 -6.70 -38.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175051282.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.720 kcal (2) G-P(sol) polarization free energy of solvation -32.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds