Wall clock time and date at job start Tue Mar 31 2020 14:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34232 * 116.99677 * 2 1 4 4 O 1.20825 * 119.99863 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99879 * 179.97438 * 3 2 1 6 6 N 1.46499 * 109.46793 * 180.02562 * 5 3 2 7 7 C 1.37104 * 119.99766 * 264.30431 * 6 5 3 8 8 H 1.07994 * 119.99798 * 196.35734 * 7 6 5 9 9 C 1.38945 * 119.99777 * 16.35621 * 7 6 5 10 10 N 1.31409 * 120.00351 * 18.43426 * 9 7 6 11 11 Si 1.86805 * 119.99770 * 198.43758 * 9 7 6 12 12 H 1.48497 * 109.47281 * 89.99847 * 11 9 7 13 13 H 1.48507 * 109.47060 * 209.99788 * 11 9 7 14 14 H 1.48504 * 109.46888 * 329.99533 * 11 9 7 15 15 C 1.34767 * 120.00294 * 84.31069 * 6 5 3 16 16 O 1.21299 * 120.00192 * 4.62789 * 15 6 5 17 17 C 1.50707 * 120.00195 * 184.63135 * 15 6 5 18 18 H 1.09000 * 109.46848 * 322.29673 * 17 15 6 19 19 C 1.52992 * 109.47181 * 82.29523 * 17 15 6 20 20 C 1.52998 * 109.47095 * 202.29909 * 17 15 6 21 21 C 1.50699 * 109.47173 * 174.99872 * 20 17 15 22 22 C 1.39871 * 126.03943 * 269.69024 * 21 20 17 23 23 C 1.50704 * 125.89620 * 359.97438 * 22 21 20 24 24 N 1.30838 * 108.20416 * 179.81696 * 22 21 20 25 25 N 1.40083 * 108.20159 * 0.43754 * 24 22 21 26 26 H 0.97002 * 126.03631 * 179.69515 * 25 24 22 27 27 C 1.34946 * 107.92671 * 359.72143 * 25 24 22 28 28 C 1.50699 * 126.12786 * 180.02562 * 27 25 24 29 29 H 1.09001 * 109.47451 * 60.00080 * 1 2 3 30 30 H 1.08998 * 109.47127 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47577 * 300.00008 * 1 2 3 32 32 H 1.08997 * 109.46911 * 60.00077 * 5 3 2 33 33 H 1.08997 * 109.47100 * 300.00166 * 5 3 2 34 34 H 0.97008 * 120.00339 * 180.02562 * 10 9 7 35 35 H 1.09003 * 109.47115 * 60.85464 * 19 17 15 36 36 H 1.09001 * 109.47045 * 180.85068 * 19 17 15 37 37 H 1.08998 * 109.47447 * 300.85001 * 19 17 15 38 38 H 1.08999 * 109.47158 * 54.99506 * 20 17 15 39 39 H 1.09000 * 109.47166 * 294.99548 * 20 17 15 40 40 H 1.09000 * 109.46883 * 90.00348 * 23 22 21 41 41 H 1.09004 * 109.47229 * 209.99783 * 23 22 21 42 42 H 1.08997 * 109.47469 * 329.99865 * 23 22 21 43 43 H 1.09001 * 109.47375 * 269.97557 * 28 27 25 44 44 H 1.09005 * 109.46703 * 29.97662 * 28 27 25 45 45 H 1.09001 * 109.47277 * 149.97250 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2750 0.0006 6 7 3.9815 2.6799 0.0011 7 6 4.2893 3.3041 -1.1802 8 1 4.8392 4.2335 -1.1724 9 6 3.8936 2.7410 -2.3872 10 7 2.9397 1.8374 -2.4093 11 14 4.7177 3.2682 -3.9785 12 1 5.8907 2.3963 -4.2411 13 1 3.7512 3.1487 -5.0997 14 1 5.1662 4.6790 -3.8598 15 6 4.0611 3.3587 1.1626 16 8 3.8709 2.7853 2.2145 17 6 4.3865 4.8302 1.1547 18 1 5.1235 5.0351 0.3782 19 6 3.1142 5.6323 0.8748 20 6 4.9548 5.2341 2.5166 21 6 5.3940 6.6749 2.4703 22 6 6.6663 7.1365 2.1171 23 6 7.8381 6.2777 1.7166 24 7 6.6623 8.4428 2.1913 25 7 5.3884 8.8537 2.6043 26 1 5.1027 9.7696 2.7473 27 6 4.6290 7.7504 2.7687 28 6 3.1871 7.7213 3.2056 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 3.9563 0.7807 -0.8891 33 1 3.9557 0.7810 0.8908 34 1 2.6637 1.4439 -3.2519 35 1 2.3827 5.4390 1.6595 36 1 3.3523 6.6958 0.8541 37 1 2.7010 5.3337 -0.0887 38 1 5.8094 4.6012 2.7559 39 1 4.1874 5.1126 3.2811 40 1 7.8268 6.1283 0.6370 41 1 8.7660 6.7715 2.0054 42 1 7.7692 5.3122 2.2178 43 1 3.1380 7.6545 4.2925 44 1 2.6887 8.6325 2.8746 45 1 2.6915 6.8558 2.7657 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175051282.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:40 Heat of formation + Delta-G solvation = -67.910947 kcal Electronic energy + Delta-G solvation = -28906.956711 eV Core-core repulsion = 24925.784278 eV Total energy + Delta-G solvation = -3981.172433 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.35628 -41.31727 -40.22780 -37.35621 -36.49973 -35.91748 -34.32574 -33.42684 -32.04208 -30.19001 -29.38992 -28.50273 -27.85921 -26.68962 -26.39075 -23.91406 -21.90193 -21.05218 -20.89519 -20.00218 -18.60113 -18.44261 -18.26512 -17.92615 -17.20449 -16.94845 -16.37734 -16.18253 -15.86125 -15.60602 -15.17346 -14.74399 -14.56077 -14.28360 -14.19554 -14.11018 -13.78854 -13.65934 -13.38288 -13.32673 -13.20115 -13.08330 -13.03440 -12.85664 -12.74674 -12.59260 -12.47821 -12.41478 -12.07980 -11.97879 -11.55178 -11.54339 -11.45648 -11.31606 -10.88491 -10.28452 -10.11763 -9.83514 -9.21679 -8.32997 -5.88086 0.93380 1.43863 1.50693 1.60164 1.72641 1.75693 1.84903 2.02962 2.30033 2.37873 2.95869 3.16826 3.78714 3.82599 4.04752 4.23388 4.27899 4.30960 4.33649 4.37810 4.42893 4.49852 4.55194 4.63641 4.70990 4.73349 4.74829 4.80235 4.83596 4.87613 4.99584 5.01116 5.07459 5.16524 5.22361 5.32532 5.40033 5.49230 5.56337 5.67288 5.77201 5.80870 6.38305 6.50238 6.79778 7.12738 7.25258 7.55448 7.95181 8.73891 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013152 B = 0.004444 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.393288 B = 6298.515045 C = 7452.807761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.378 6.378 3 C 0.487 3.513 4 O -0.537 6.537 5 C 0.151 3.849 6 N -0.440 5.440 7 C -0.340 4.340 8 H 0.113 0.887 9 C -0.003 4.003 10 N -0.900 5.900 11 Si 0.989 3.011 12 H -0.268 1.268 13 H -0.292 1.292 14 H -0.263 1.263 15 C 0.467 3.533 16 O -0.629 6.629 17 C -0.075 4.075 18 H 0.085 0.915 19 C -0.117 4.117 20 C -0.006 4.006 21 C -0.246 4.246 22 C 0.075 3.925 23 C -0.077 4.077 24 N -0.326 5.326 25 N -0.471 5.471 26 H 0.449 0.551 27 C 0.101 3.899 28 C -0.106 4.106 29 H 0.044 0.956 30 H 0.133 0.867 31 H 0.051 0.949 32 H 0.123 0.877 33 H 0.087 0.913 34 H 0.270 0.730 35 H 0.049 0.951 36 H 0.077 0.923 37 H 0.038 0.962 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.095 0.905 44 H 0.094 0.906 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.714 6.632 5.488 8.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.295 6.295 3 C 0.330 3.670 4 O -0.425 6.425 5 C 0.025 3.975 6 N -0.158 5.158 7 C -0.467 4.467 8 H 0.131 0.869 9 C -0.204 4.204 10 N -0.539 5.539 11 Si 0.813 3.187 12 H -0.194 1.194 13 H -0.218 1.218 14 H -0.187 1.187 15 C 0.258 3.742 16 O -0.517 6.517 17 C -0.096 4.096 18 H 0.103 0.897 19 C -0.174 4.174 20 C -0.045 4.045 21 C -0.257 4.257 22 C -0.091 4.091 23 C -0.135 4.135 24 N -0.150 5.150 25 N -0.181 5.181 26 H 0.295 0.705 27 C -0.028 4.028 28 C -0.164 4.164 29 H 0.063 0.937 30 H 0.151 0.849 31 H 0.070 0.930 32 H 0.141 0.859 33 H 0.105 0.895 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.095 0.905 37 H 0.057 0.943 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.099 0.901 41 H 0.101 0.899 42 H 0.101 0.899 43 H 0.113 0.887 44 H 0.113 0.887 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.988 7.587 5.681 9.685 hybrid contribution -0.910 -0.201 -0.965 1.341 sum 1.078 7.386 4.717 8.830 Atomic orbital electron populations 1.23280 0.76271 1.04798 1.01169 1.86429 1.24057 1.33929 1.85035 1.24099 0.92624 0.80750 0.69479 1.90470 1.67319 1.37576 1.47094 1.20543 0.87070 0.86218 1.03685 1.43624 1.57244 1.08220 1.06687 1.19983 1.34476 1.09754 0.82443 0.86922 1.25979 0.95161 0.97046 1.02249 1.69906 1.25822 1.29968 1.28238 0.84978 0.77758 0.79166 0.76778 1.19350 1.21813 1.18689 1.20961 0.80415 0.90043 0.82813 1.90487 1.57704 1.71303 1.32213 1.20940 0.99269 0.90032 0.99397 0.89668 1.21596 0.95579 0.99503 1.00743 1.19472 0.99839 0.90229 0.94918 1.19749 0.94358 0.95712 1.15875 1.22571 0.96636 0.91586 0.98289 1.20280 0.93133 0.97679 1.02415 1.77166 1.00269 1.13182 1.24425 1.46092 1.08255 1.08719 1.55008 0.70483 1.21167 0.95699 0.86795 0.99174 1.20834 0.87152 1.05228 1.03173 0.93667 0.84912 0.93042 0.85936 0.89510 0.91987 0.93221 0.90473 0.94293 0.91823 0.91743 0.90057 0.89939 0.89929 0.88688 0.88704 0.89699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.29 10.56 113.37 1.20 2.49 16 2 O -0.38 -16.21 10.57 -51.44 -0.54 -16.75 16 3 C 0.49 24.31 6.13 71.24 0.44 24.75 16 4 O -0.54 -29.80 15.85 21.97 0.35 -29.45 16 5 C 0.15 7.30 5.18 85.63 0.44 7.75 16 6 N -0.44 -21.81 2.17 -639.61 -1.39 -23.21 16 7 C -0.34 -16.58 8.72 84.04 0.73 -15.85 16 8 H 0.11 5.20 5.94 -2.91 -0.02 5.18 16 9 C 0.00 -0.16 4.96 84.93 0.42 0.27 16 10 N -0.90 -46.10 9.12 21.66 0.20 -45.90 16 11 Si 0.99 38.86 29.59 68.60 2.03 40.89 16 12 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 13 H -0.29 -11.73 7.11 99.48 0.71 -11.03 16 14 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 15 C 0.47 22.24 6.57 87.66 0.58 22.81 16 16 O -0.63 -32.55 15.81 -3.09 -0.05 -32.60 16 17 C -0.08 -2.93 1.99 -11.54 -0.02 -2.95 16 18 H 0.09 3.33 6.28 -2.39 -0.01 3.31 16 19 C -0.12 -4.33 7.52 71.98 0.54 -3.79 16 20 C -0.01 -0.19 4.06 29.85 0.12 -0.07 16 21 C -0.25 -7.34 4.82 -20.14 -0.10 -7.44 16 22 C 0.07 2.21 7.22 43.10 0.31 2.52 16 23 C -0.08 -1.88 10.26 71.24 0.73 -1.15 16 24 N -0.33 -9.50 12.70 -47.38 -0.60 -10.10 16 25 N -0.47 -11.03 7.36 -48.01 -0.35 -11.38 16 26 H 0.45 7.17 8.96 -213.33 -1.91 5.26 16 27 C 0.10 2.52 6.27 41.40 0.26 2.78 16 28 C -0.11 -2.03 9.48 71.24 0.68 -1.35 16 29 H 0.04 1.60 8.13 -2.39 -0.02 1.58 16 30 H 0.13 3.15 8.14 -2.39 -0.02 3.13 16 31 H 0.05 1.70 8.13 -2.39 -0.02 1.68 16 32 H 0.12 5.95 6.27 -2.39 -0.01 5.93 16 33 H 0.09 3.99 7.54 -2.39 -0.02 3.97 16 34 H 0.27 13.32 8.31 -92.70 -0.77 12.55 16 35 H 0.05 1.83 6.91 -2.39 -0.02 1.81 16 36 H 0.08 2.42 5.88 -2.39 -0.01 2.41 16 37 H 0.04 1.67 7.73 -2.39 -0.02 1.65 16 38 H 0.06 2.19 7.25 -2.39 -0.02 2.17 16 39 H 0.06 2.25 7.68 -2.39 -0.02 2.23 16 40 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 42 H 0.08 1.96 7.25 -2.39 -0.02 1.94 16 43 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 45 H 0.08 1.96 4.51 -2.39 -0.01 1.95 16 Total: -1.00 -69.32 365.69 5.09 -64.24 By element: Atomic # 1 Polarization: 34.39 SS G_CDS: -0.88 Total: 33.51 kcal Atomic # 6 Polarization: 24.43 SS G_CDS: 6.33 Total: 30.76 kcal Atomic # 7 Polarization: -88.45 SS G_CDS: -2.15 Total: -90.59 kcal Atomic # 8 Polarization: -78.56 SS G_CDS: -0.24 Total: -78.81 kcal Atomic # 14 Polarization: 38.86 SS G_CDS: 2.03 Total: 40.89 kcal Total: -69.32 5.09 -64.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175051282.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.675 kcal (2) G-P(sol) polarization free energy of solvation -69.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds