Wall clock time and date at job start Tue Mar 31 2020 13:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42901 * 109.47077 * 2 1 4 4 C 1.35990 * 117.00105 * 179.97438 * 3 2 1 5 5 C 1.38561 * 120.07348 * 359.96021 * 4 3 2 6 6 C 1.38240 * 120.00082 * 180.02562 * 5 4 3 7 7 C 1.38250 * 120.15007 * 359.97438 * 6 5 4 8 8 C 1.38247 * 120.14321 * 0.02820 * 7 6 5 9 9 C 1.38563 * 119.99762 * 359.97193 * 8 7 6 10 10 O 1.35999 * 120.07105 * 180.02562 * 9 8 7 11 11 C 1.42896 * 116.99967 * 0.02562 * 10 9 8 12 12 C 1.53002 * 109.47042 * 179.97438 * 11 10 9 13 13 N 1.46505 * 109.46831 * 64.31599 * 12 11 10 14 14 C 1.36942 * 119.99849 * 264.86520 * 13 12 11 15 15 H 1.08004 * 120.00005 * 323.57731 * 14 13 12 16 16 C 1.38808 * 120.00159 * 143.57343 * 14 13 12 17 17 N 1.31615 * 120.00631 * 158.67737 * 16 14 13 18 18 Si 1.86803 * 119.99850 * 338.67707 * 16 14 13 19 19 H 1.48510 * 109.47083 * 95.23167 * 18 16 14 20 20 H 1.48501 * 109.47452 * 215.23280 * 18 16 14 21 21 H 1.48500 * 109.47229 * 335.23508 * 18 16 14 22 22 C 1.46494 * 120.00253 * 84.86942 * 13 12 11 23 23 C 1.50698 * 109.47232 * 89.99663 * 22 13 12 24 24 O 1.20827 * 120.00045 * 0.02562 * 23 22 13 25 25 O 1.34233 * 120.00252 * 179.97438 * 23 22 13 26 26 C 1.45192 * 117.00206 * 180.02562 * 25 23 22 27 27 H 1.09001 * 109.47336 * 59.99889 * 1 2 3 28 28 H 1.08999 * 109.46960 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46999 * 299.99779 * 1 2 3 30 30 H 1.09001 * 109.46999 * 240.00221 * 2 1 3 31 31 H 1.09001 * 109.47336 * 120.00111 * 2 1 3 32 32 H 1.08001 * 120.00013 * 0.04435 * 5 4 3 33 33 H 1.08003 * 119.93017 * 180.27747 * 6 5 4 34 34 H 1.07997 * 119.93503 * 180.02562 * 7 6 5 35 35 H 1.08003 * 120.00217 * 180.02562 * 8 7 6 36 36 H 1.09004 * 109.47071 * 300.00034 * 11 10 9 37 37 H 1.08998 * 109.47208 * 60.00535 * 11 10 9 38 38 H 1.08997 * 109.47213 * 184.31043 * 12 11 10 39 39 H 1.08998 * 109.47375 * 304.31943 * 12 11 10 40 40 H 0.96991 * 120.00534 * 180.02562 * 17 16 14 41 41 H 1.08995 * 109.47302 * 209.99668 * 22 13 12 42 42 H 1.09001 * 109.47267 * 329.99589 * 22 13 12 43 43 H 1.09000 * 109.47539 * 180.02562 * 26 25 23 44 44 H 1.09002 * 109.47466 * 300.00456 * 26 25 23 45 45 H 1.08996 * 109.47359 * 60.00456 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3545 1.5255 0.0005 5 6 4.2000 0.4278 0.0019 6 6 5.5702 0.6107 0.0030 7 6 6.1004 1.8875 0.0022 8 6 5.2624 2.9871 0.0009 9 6 3.8881 2.8107 -0.0002 10 8 3.0623 3.8913 -0.0020 11 6 3.6802 5.1798 -0.0033 12 6 2.5999 6.2634 -0.0058 13 7 1.8300 6.1883 1.2383 14 6 0.6571 5.4826 1.2761 15 1 -0.0007 5.4820 0.4195 16 6 0.3135 4.7678 2.4154 17 7 -0.9434 4.4459 2.6363 18 14 1.6352 4.2628 3.6351 19 1 1.7127 5.2681 4.7255 20 1 1.2981 2.9352 4.2089 21 1 2.9455 4.1837 2.9407 22 6 2.3149 6.8682 2.4419 23 6 1.7654 8.2709 2.4823 24 8 1.0426 8.6623 1.5968 25 8 2.0782 9.0852 3.5026 26 6 1.5127 10.4222 3.4762 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.7885 -0.5708 0.0018 33 1 6.2282 -0.2458 -0.0005 34 1 7.1714 2.0264 0.0026 35 1 5.6790 3.9835 -0.0002 36 1 4.3001 5.2864 0.8870 37 1 4.3010 5.2843 -0.8930 38 1 3.0692 7.2441 -0.0840 39 1 1.9339 6.1104 -0.8550 40 1 -1.1835 3.9468 3.4325 41 1 1.9838 6.3228 3.3256 42 1 3.4041 6.9050 2.4246 43 1 1.8442 10.9744 4.3555 44 1 1.8448 10.9395 2.5761 45 1 0.4247 10.3565 3.4769 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177616738.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:32 Heat of formation + Delta-G solvation = -95.325355 kcal Electronic energy + Delta-G solvation = -28512.672989 eV Core-core repulsion = 24498.019027 eV Total energy + Delta-G solvation = -4014.653962 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.16881 -39.60689 -38.21645 -36.78836 -36.09453 -35.06161 -31.89012 -31.57493 -30.23580 -29.83969 -28.64310 -27.82963 -26.19693 -24.41090 -23.37972 -21.99453 -21.63736 -20.86526 -19.81408 -18.38719 -17.31206 -16.99859 -16.81363 -16.16675 -15.90896 -15.84170 -15.50080 -15.22076 -14.88926 -14.68592 -14.47564 -13.94632 -13.62910 -13.08327 -13.01921 -12.92521 -12.65659 -12.51545 -12.33590 -12.17448 -11.86500 -11.81576 -11.67281 -11.55341 -11.41530 -11.10694 -10.76923 -10.57652 -10.54159 -10.47395 -10.28802 -10.21754 -10.13702 -9.67450 -9.52220 -8.53644 -8.51524 -7.42549 -7.04402 -5.95833 -3.38581 1.50119 1.70458 3.05683 3.27035 3.38353 3.49019 3.51331 3.53818 3.74244 3.97380 4.52056 4.81848 4.95346 5.06161 5.13847 5.18628 5.27247 5.33366 5.41932 5.44794 5.48547 5.51870 5.57919 5.59662 5.67365 5.70142 5.78771 5.79879 5.85122 5.91325 5.97906 6.07736 6.10025 6.19052 6.36838 6.45301 6.46705 6.63176 6.66211 6.92112 7.07399 7.55412 7.92803 8.10069 8.36471 8.59760 8.93171 9.68875 9.96870 11.19376 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.014143 B = 0.004513 C = 0.003867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.250890 B = 6202.636739 C = 7239.304723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.290 6.290 4 C 0.100 3.900 5 C -0.180 4.180 6 C -0.132 4.132 7 C -0.121 4.121 8 C -0.185 4.185 9 C 0.115 3.885 10 O -0.264 6.264 11 C 0.036 3.964 12 C 0.151 3.849 13 N -0.567 5.567 14 C -0.251 4.251 15 H 0.085 0.915 16 C 0.044 3.956 17 N -0.893 5.893 18 Si 0.866 3.134 19 H -0.287 1.287 20 H -0.298 1.298 21 H -0.263 1.263 22 C 0.139 3.861 23 C 0.426 3.574 24 O -0.492 6.492 25 O -0.378 6.378 26 C 0.035 3.965 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.129 0.871 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.131 0.869 36 H 0.051 0.949 37 H 0.051 0.949 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.263 0.737 41 H 0.093 0.907 42 H 0.082 0.918 43 H 0.089 0.911 44 H 0.054 0.946 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.352 -3.683 -3.423 13.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.203 6.203 4 C 0.054 3.946 5 C -0.199 4.199 6 C -0.151 4.151 7 C -0.140 4.140 8 C -0.204 4.204 9 C 0.067 3.933 10 O -0.176 6.176 11 C -0.042 4.042 12 C 0.025 3.975 13 N -0.286 5.286 14 C -0.379 4.379 15 H 0.103 0.897 16 C -0.157 4.157 17 N -0.533 5.533 18 Si 0.697 3.303 19 H -0.216 1.216 20 H -0.226 1.226 21 H -0.187 1.187 22 C 0.010 3.990 23 C 0.265 3.735 24 O -0.377 6.377 25 O -0.295 6.295 26 C -0.060 4.060 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.147 0.853 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.149 0.851 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.082 0.918 39 H 0.093 0.907 40 H 0.073 0.927 41 H 0.110 0.890 42 H 0.100 0.900 43 H 0.107 0.893 44 H 0.072 0.928 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.567 -3.484 -3.636 12.615 hybrid contribution 0.865 -0.323 0.896 1.287 sum 12.432 -3.807 -2.740 13.287 Atomic orbital electron populations 1.21746 0.92575 1.02059 1.04542 1.22735 0.96311 0.82523 1.00350 1.86365 1.17579 1.28019 1.88342 1.18341 0.83522 0.91315 1.01426 1.21010 0.94100 0.97245 1.07498 1.20698 0.94113 0.97034 1.03231 1.20754 0.99174 0.92067 1.01975 1.21074 0.91464 1.00117 1.07766 1.18547 0.89269 0.86648 0.98803 1.86517 1.32149 1.11917 1.86972 1.23768 0.97875 0.83147 0.99362 1.21096 0.92468 0.93266 0.90660 1.43843 1.25224 1.53421 1.06077 1.18689 0.94085 1.22190 1.02927 0.89738 1.25327 0.95455 0.96992 0.97889 1.69843 1.15642 1.40476 1.27360 0.87109 0.84780 0.77564 0.80848 1.21611 1.22595 1.18704 1.21301 0.98098 0.85540 0.94083 1.26556 0.79170 0.89057 0.78735 1.90570 1.33826 1.75372 1.37935 1.86622 1.69038 1.24796 1.49054 1.23059 0.99140 0.81768 1.02046 0.91362 0.90977 0.90817 0.92699 0.92672 0.85334 0.86242 0.86208 0.85119 0.93095 0.93116 0.91778 0.90699 0.92733 0.88992 0.89999 0.89256 0.92766 0.92452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 10.28 37.16 0.38 -1.77 16 2 C 0.06 0.83 5.46 37.16 0.20 1.03 16 3 O -0.29 -5.76 9.92 -34.21 -0.34 -6.10 16 4 C 0.10 1.85 6.70 -39.12 -0.26 1.58 16 5 C -0.18 -2.64 9.04 -39.46 -0.36 -3.00 16 6 C -0.13 -1.73 10.04 -39.58 -0.40 -2.12 16 7 C -0.12 -1.61 10.04 -39.57 -0.40 -2.01 16 8 C -0.19 -2.86 9.04 -39.46 -0.36 -3.22 16 9 C 0.11 2.18 6.70 -39.12 -0.26 1.91 16 10 O -0.26 -5.61 9.61 -34.24 -0.33 -5.94 16 11 C 0.04 0.64 5.09 37.16 0.19 0.83 16 12 C 0.15 2.93 6.07 -4.04 -0.02 2.90 16 13 N -0.57 -13.40 1.55 -174.61 -0.27 -13.67 16 14 C -0.25 -7.09 9.66 -15.06 -0.15 -7.24 16 15 H 0.09 2.64 8.06 -52.48 -0.42 2.22 16 16 C 0.04 1.29 5.33 -17.43 -0.09 1.19 16 17 N -0.89 -27.56 13.97 55.49 0.78 -26.78 16 18 Si 0.87 22.36 24.92 -169.99 -4.24 18.12 16 19 H -0.29 -7.11 6.68 56.52 0.38 -6.73 16 20 H -0.30 -7.91 7.11 56.52 0.40 -7.51 16 21 H -0.26 -6.57 7.11 56.52 0.40 -6.16 16 22 C 0.14 3.03 5.11 -5.20 -0.03 3.00 16 23 C 0.43 9.25 8.03 36.00 0.29 9.54 16 24 O -0.49 -11.98 16.18 -18.75 -0.30 -12.28 16 25 O -0.38 -7.11 10.56 -39.26 -0.41 -7.53 16 26 C 0.03 0.51 10.56 101.05 1.07 1.57 16 27 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.05 0.67 7.67 -51.93 -0.40 0.27 16 31 H 0.06 0.74 7.66 -51.93 -0.40 0.34 16 32 H 0.13 1.56 6.30 -52.49 -0.33 1.23 16 33 H 0.12 1.20 8.06 -52.48 -0.42 0.77 16 34 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 35 H 0.13 1.75 6.30 -52.48 -0.33 1.42 16 36 H 0.05 0.86 7.66 -51.93 -0.40 0.46 16 37 H 0.05 0.72 7.66 -51.93 -0.40 0.32 16 38 H 0.06 1.07 8.11 -51.93 -0.42 0.65 16 39 H 0.07 1.51 8.00 -51.93 -0.42 1.09 16 40 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 41 H 0.09 2.19 3.03 -51.93 -0.16 2.03 16 42 H 0.08 1.46 8.07 -51.93 -0.42 1.04 16 43 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.05 0.75 8.13 -51.93 -0.42 0.33 16 45 H 0.06 0.88 8.13 -51.93 -0.42 0.46 16 LS Contribution 376.51 15.07 5.67 5.67 Total: -1.00 -35.37 376.51 -6.26 -41.63 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -6.63 Total: 2.65 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: -0.19 Total: 4.21 kcal Atomic # 7 Polarization: -40.95 SS G_CDS: 0.51 Total: -40.45 kcal Atomic # 8 Polarization: -30.46 SS G_CDS: -1.39 Total: -31.85 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.24 Total: 18.12 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.37 -6.26 -41.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177616738.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.692 kcal (2) G-P(sol) polarization free energy of solvation -35.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds