Wall clock time and date at job start Tue Mar 31 2020 13:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42901 * 109.47077 * 2 1 4 4 C 1.35990 * 117.00105 * 179.97438 * 3 2 1 5 5 C 1.38561 * 120.07348 * 359.96021 * 4 3 2 6 6 C 1.38240 * 120.00082 * 180.02562 * 5 4 3 7 7 C 1.38250 * 120.15007 * 359.97438 * 6 5 4 8 8 C 1.38247 * 120.14321 * 0.02820 * 7 6 5 9 9 C 1.38563 * 119.99762 * 359.97193 * 8 7 6 10 10 O 1.35999 * 120.07105 * 180.02562 * 9 8 7 11 11 C 1.42896 * 116.99967 * 0.02562 * 10 9 8 12 12 C 1.53002 * 109.47042 * 179.97438 * 11 10 9 13 13 N 1.46505 * 109.46831 * 64.31599 * 12 11 10 14 14 C 1.36942 * 119.99849 * 264.86520 * 13 12 11 15 15 H 1.08004 * 120.00005 * 323.57731 * 14 13 12 16 16 C 1.38808 * 120.00159 * 143.57343 * 14 13 12 17 17 N 1.31615 * 120.00631 * 158.67737 * 16 14 13 18 18 Si 1.86803 * 119.99850 * 338.67707 * 16 14 13 19 19 H 1.48510 * 109.47083 * 95.23167 * 18 16 14 20 20 H 1.48501 * 109.47452 * 215.23280 * 18 16 14 21 21 H 1.48500 * 109.47229 * 335.23508 * 18 16 14 22 22 C 1.46494 * 120.00253 * 84.86942 * 13 12 11 23 23 C 1.50698 * 109.47232 * 89.99663 * 22 13 12 24 24 O 1.20827 * 120.00045 * 0.02562 * 23 22 13 25 25 O 1.34233 * 120.00252 * 179.97438 * 23 22 13 26 26 C 1.45192 * 117.00206 * 180.02562 * 25 23 22 27 27 H 1.09001 * 109.47336 * 59.99889 * 1 2 3 28 28 H 1.08999 * 109.46960 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46999 * 299.99779 * 1 2 3 30 30 H 1.09001 * 109.46999 * 240.00221 * 2 1 3 31 31 H 1.09001 * 109.47336 * 120.00111 * 2 1 3 32 32 H 1.08001 * 120.00013 * 0.04435 * 5 4 3 33 33 H 1.08003 * 119.93017 * 180.27747 * 6 5 4 34 34 H 1.07997 * 119.93503 * 180.02562 * 7 6 5 35 35 H 1.08003 * 120.00217 * 180.02562 * 8 7 6 36 36 H 1.09004 * 109.47071 * 300.00034 * 11 10 9 37 37 H 1.08998 * 109.47208 * 60.00535 * 11 10 9 38 38 H 1.08997 * 109.47213 * 184.31043 * 12 11 10 39 39 H 1.08998 * 109.47375 * 304.31943 * 12 11 10 40 40 H 0.96991 * 120.00534 * 180.02562 * 17 16 14 41 41 H 1.08995 * 109.47302 * 209.99668 * 22 13 12 42 42 H 1.09001 * 109.47267 * 329.99589 * 22 13 12 43 43 H 1.09000 * 109.47539 * 180.02562 * 26 25 23 44 44 H 1.09002 * 109.47466 * 300.00456 * 26 25 23 45 45 H 1.08996 * 109.47359 * 60.00456 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3545 1.5255 0.0005 5 6 4.2000 0.4278 0.0019 6 6 5.5702 0.6107 0.0030 7 6 6.1004 1.8875 0.0022 8 6 5.2624 2.9871 0.0009 9 6 3.8881 2.8107 -0.0002 10 8 3.0623 3.8913 -0.0020 11 6 3.6802 5.1798 -0.0033 12 6 2.5999 6.2634 -0.0058 13 7 1.8300 6.1883 1.2383 14 6 0.6571 5.4826 1.2761 15 1 -0.0007 5.4820 0.4195 16 6 0.3135 4.7678 2.4154 17 7 -0.9434 4.4459 2.6363 18 14 1.6352 4.2628 3.6351 19 1 1.7127 5.2681 4.7255 20 1 1.2981 2.9352 4.2089 21 1 2.9455 4.1837 2.9407 22 6 2.3149 6.8682 2.4419 23 6 1.7654 8.2709 2.4823 24 8 1.0426 8.6623 1.5968 25 8 2.0782 9.0852 3.5026 26 6 1.5127 10.4222 3.4762 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.7885 -0.5708 0.0018 33 1 6.2282 -0.2458 -0.0005 34 1 7.1714 2.0264 0.0026 35 1 5.6790 3.9835 -0.0002 36 1 4.3001 5.2864 0.8870 37 1 4.3010 5.2843 -0.8930 38 1 3.0692 7.2441 -0.0840 39 1 1.9339 6.1104 -0.8550 40 1 -1.1835 3.9468 3.4325 41 1 1.9838 6.3228 3.3256 42 1 3.4041 6.9050 2.4246 43 1 1.8442 10.9744 4.3555 44 1 1.8448 10.9395 2.5761 45 1 0.4247 10.3565 3.4769 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177616738.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:31 Heat of formation + Delta-G solvation = -118.296084 kcal Electronic energy + Delta-G solvation = -28513.669075 eV Core-core repulsion = 24498.019027 eV Total energy + Delta-G solvation = -4015.650048 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.40165 -41.23933 -39.55513 -38.19217 -37.55771 -36.79800 -33.91134 -32.81722 -31.64399 -31.06565 -29.98051 -29.34735 -27.74476 -25.93391 -24.77267 -23.18934 -23.10484 -22.29461 -21.40102 -19.61036 -19.19719 -18.61638 -18.19843 -17.83336 -17.21503 -17.17308 -17.00692 -16.80390 -16.56511 -15.78618 -15.64714 -15.45981 -15.00965 -14.79738 -14.57907 -14.46668 -14.23551 -13.91028 -13.77509 -13.39203 -13.36602 -13.28851 -12.89594 -12.84056 -12.76644 -12.63696 -12.42534 -12.13170 -12.00977 -11.81772 -11.68963 -11.66471 -11.63073 -11.60207 -11.38474 -10.66897 -9.63372 -8.99098 -8.65624 -8.19529 -5.59477 0.38961 0.57242 1.20234 1.30628 1.41968 1.50138 1.86842 2.37653 2.38340 2.49416 2.85666 3.07287 3.22966 3.87513 3.99360 4.02139 4.08045 4.12296 4.19518 4.21392 4.28008 4.29091 4.31818 4.35552 4.37138 4.40120 4.51112 4.54704 4.55856 4.61880 4.70384 4.77659 4.88434 4.88728 5.08448 5.19167 5.33950 5.41186 5.47825 5.58738 5.85743 5.90480 6.15041 6.36245 6.76731 6.88428 7.02013 7.53554 7.87158 9.00778 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.014143 B = 0.004513 C = 0.003867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.250890 B = 6202.636739 C = 7239.304723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.050 3.950 3 O -0.338 6.338 4 C 0.062 3.938 5 C -0.178 4.178 6 C -0.125 4.125 7 C -0.116 4.116 8 C -0.184 4.184 9 C 0.072 3.928 10 O -0.310 6.310 11 C 0.040 3.960 12 C 0.148 3.852 13 N -0.580 5.580 14 C -0.233 4.233 15 H 0.033 0.967 16 C -0.014 4.014 17 N -0.947 5.947 18 Si 0.933 3.067 19 H -0.267 1.267 20 H -0.315 1.315 21 H -0.247 1.247 22 C 0.135 3.865 23 C 0.432 3.568 24 O -0.528 6.528 25 O -0.374 6.374 26 C 0.027 3.973 27 H 0.055 0.945 28 H 0.111 0.889 29 H 0.037 0.963 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.151 0.849 33 H 0.158 0.842 34 H 0.158 0.842 35 H 0.150 0.850 36 H 0.063 0.937 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.051 0.949 40 H 0.261 0.739 41 H 0.075 0.925 42 H 0.131 0.869 43 H 0.134 0.866 44 H 0.063 0.937 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.988 -3.918 -2.762 17.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.025 4.025 3 O -0.253 6.253 4 C 0.016 3.984 5 C -0.197 4.197 6 C -0.143 4.143 7 C -0.134 4.134 8 C -0.203 4.203 9 C 0.026 3.974 10 O -0.224 6.224 11 C -0.037 4.037 12 C 0.023 3.977 13 N -0.300 5.300 14 C -0.363 4.363 15 H 0.050 0.950 16 C -0.210 4.210 17 N -0.591 5.591 18 Si 0.762 3.238 19 H -0.194 1.194 20 H -0.244 1.244 21 H -0.171 1.171 22 C 0.006 3.994 23 C 0.272 3.728 24 O -0.416 6.416 25 O -0.291 6.291 26 C -0.066 4.066 27 H 0.074 0.926 28 H 0.130 0.870 29 H 0.056 0.944 30 H 0.101 0.899 31 H 0.085 0.915 32 H 0.168 0.832 33 H 0.176 0.824 34 H 0.176 0.824 35 H 0.168 0.832 36 H 0.081 0.919 37 H 0.105 0.895 38 H 0.115 0.885 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.092 0.908 42 H 0.149 0.851 43 H 0.152 0.848 44 H 0.082 0.918 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 16.270 -3.684 -2.973 16.945 hybrid contribution -0.532 -0.167 0.603 0.821 sum 15.738 -3.851 -2.370 16.375 Atomic orbital electron populations 1.21782 0.92969 1.03837 1.02090 1.22978 0.96068 0.81258 1.02155 1.86299 1.19181 1.30687 1.89113 1.18849 0.83396 0.92582 1.03539 1.21353 0.94744 0.97204 1.06391 1.21219 0.93716 0.98497 1.00834 1.21250 1.00846 0.91409 0.99936 1.21385 0.90130 1.01988 1.06798 1.19015 0.90634 0.86209 1.01546 1.86439 1.34399 1.13417 1.88112 1.23701 0.96956 0.81462 1.01552 1.21239 0.92553 0.95903 0.88010 1.43845 1.24422 1.53789 1.07979 1.18361 0.94855 1.22112 1.00942 0.94970 1.25913 0.97175 0.97522 1.00342 1.69984 1.17832 1.42699 1.28616 0.86038 0.82379 0.76418 0.78991 1.19419 1.24425 1.17080 1.21334 1.00705 0.85100 0.92242 1.26273 0.78315 0.89493 0.78713 1.90568 1.35320 1.76229 1.39455 1.86559 1.68765 1.26404 1.47342 1.23445 0.98549 0.79845 1.04774 0.92576 0.87023 0.94411 0.89923 0.91470 0.83168 0.82423 0.82426 0.83225 0.91901 0.89546 0.88530 0.93019 0.93031 0.90779 0.85127 0.84787 0.91823 0.93641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.46 10.28 71.98 0.74 -3.72 16 2 C 0.05 1.49 5.46 71.98 0.39 1.88 16 3 O -0.34 -14.08 9.92 -79.57 -0.79 -14.87 16 4 C 0.06 2.28 6.70 22.57 0.15 2.43 16 5 C -0.18 -4.86 9.04 22.35 0.20 -4.65 16 6 C -0.12 -2.72 10.04 22.27 0.22 -2.49 16 7 C -0.12 -2.57 10.04 22.27 0.22 -2.34 16 8 C -0.18 -5.16 9.04 22.35 0.20 -4.96 16 9 C 0.07 2.71 6.70 22.57 0.15 2.86 16 10 O -0.31 -13.42 9.61 -79.68 -0.77 -14.19 16 11 C 0.04 1.35 5.09 71.98 0.37 1.71 16 12 C 0.15 5.69 6.07 86.38 0.52 6.21 16 13 N -0.58 -27.70 1.55 -706.35 -1.09 -28.80 16 14 C -0.23 -13.91 9.66 84.03 0.81 -13.10 16 15 H 0.03 2.22 8.06 -2.91 -0.02 2.19 16 16 C -0.01 -0.83 5.33 84.86 0.45 -0.38 16 17 N -0.95 -62.19 13.97 21.65 0.30 -61.89 16 18 Si 0.93 47.71 24.92 68.60 1.71 49.42 16 19 H -0.27 -12.56 6.68 99.48 0.66 -11.90 16 20 H -0.32 -16.79 7.11 99.48 0.71 -16.08 16 21 H -0.25 -11.88 7.11 99.48 0.71 -11.17 16 22 C 0.13 5.64 5.11 85.63 0.44 6.08 16 23 C 0.43 18.21 8.03 71.24 0.57 18.78 16 24 O -0.53 -25.74 16.18 21.96 0.36 -25.39 16 25 O -0.37 -13.17 10.56 -51.44 -0.54 -13.71 16 26 C 0.03 0.74 10.56 113.37 1.20 1.93 16 27 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.08 1.93 7.67 -2.39 -0.02 1.92 16 31 H 0.07 1.78 7.66 -2.39 -0.02 1.76 16 32 H 0.15 3.24 6.30 -2.91 -0.02 3.22 16 33 H 0.16 2.23 8.06 -2.91 -0.02 2.20 16 34 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16 35 H 0.15 3.43 6.30 -2.91 -0.02 3.42 16 36 H 0.06 1.93 7.66 -2.39 -0.02 1.91 16 37 H 0.09 2.23 7.66 -2.39 -0.02 2.21 16 38 H 0.10 3.04 8.11 -2.39 -0.02 3.02 16 39 H 0.05 2.19 8.00 -2.39 -0.02 2.17 16 40 H 0.26 16.23 8.31 -92.71 -0.77 15.46 16 41 H 0.07 3.42 3.03 -2.39 -0.01 3.41 16 42 H 0.13 4.15 8.07 -2.39 -0.02 4.13 16 43 H 0.13 2.41 8.14 -2.39 -0.02 2.39 16 44 H 0.06 1.61 8.13 -2.39 -0.02 1.59 16 45 H 0.04 1.34 8.13 -2.39 -0.02 1.32 16 Total: -1.00 -85.15 376.51 6.77 -78.38 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: 0.95 Total: 20.81 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: 6.65 Total: 10.24 kcal Atomic # 7 Polarization: -89.90 SS G_CDS: -0.79 Total: -90.69 kcal Atomic # 8 Polarization: -66.42 SS G_CDS: -1.74 Total: -68.16 kcal Atomic # 14 Polarization: 47.71 SS G_CDS: 1.71 Total: 49.42 kcal Total: -85.15 6.77 -78.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177616738.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.920 kcal (2) G-P(sol) polarization free energy of solvation -85.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds