Wall clock time and date at job start Tue Mar 31 2020 13:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.40061 * 125.87729 * 2 1 4 4 C 1.30252 * 109.69542 * 180.02562 * 3 2 1 5 5 C 1.41164 * 108.47111 * 359.97438 * 4 3 2 6 6 C 1.36318 * 125.87119 * 180.02562 * 2 1 3 7 7 N 1.33197 * 134.61544 * 359.96318 * 6 2 1 8 8 C 1.31498 * 120.68651 * 180.02562 * 7 6 2 9 9 N 1.32134 * 122.64387 * 359.97438 * 8 7 6 10 10 C 1.32857 * 121.18963 * 0.02562 * 9 8 7 11 11 N 1.38116 * 120.80769 * 180.02562 * 10 9 8 12 12 C 1.46501 * 120.00123 * 359.97438 * 11 10 9 13 13 H 1.08996 * 109.46756 * 325.00233 * 12 11 10 14 14 C 1.52996 * 109.46963 * 205.00149 * 12 11 10 15 15 C 1.50699 * 109.47371 * 65.00319 * 14 12 11 16 16 H 1.08003 * 119.99861 * 359.97438 * 15 14 12 17 17 C 1.37876 * 120.00395 * 180.02562 * 15 14 12 18 18 N 1.31513 * 120.00291 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 119.99960 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.47011 * 90.00148 * 19 17 15 21 21 H 1.48494 * 109.47267 * 210.00134 * 19 17 15 22 22 H 1.48498 * 109.47073 * 330.00501 * 19 17 15 23 23 C 1.50696 * 109.46928 * 85.00290 * 12 11 10 24 24 C 1.38241 * 119.99987 * 39.72724 * 23 12 11 25 25 C 1.38231 * 119.99637 * 179.78884 * 24 23 12 26 26 C 1.38237 * 120.00201 * 0.43964 * 25 24 23 27 27 C 1.38233 * 120.00045 * 359.80964 * 26 25 24 28 28 C 1.38237 * 120.00111 * 359.97438 * 27 26 25 29 29 H 1.09009 * 109.46918 * 269.96001 * 1 2 3 30 30 H 1.08998 * 109.47253 * 29.95340 * 1 2 3 31 31 H 1.09001 * 109.47971 * 149.95880 * 1 2 3 32 32 H 1.08001 * 125.76176 * 180.02562 * 4 3 2 33 33 H 1.08002 * 118.68193 * 180.27658 * 8 7 6 34 34 H 0.97004 * 119.99485 * 179.97438 * 11 10 9 35 35 H 1.08995 * 109.47106 * 185.00334 * 14 12 11 36 36 H 1.09008 * 109.47435 * 305.00164 * 14 12 11 37 37 H 0.96995 * 120.00586 * 179.97438 * 18 17 15 38 38 H 1.07999 * 120.00019 * 359.97438 * 24 23 12 39 39 H 1.08005 * 119.99879 * 180.27371 * 25 24 23 40 40 H 1.08004 * 120.00128 * 179.83679 * 26 25 24 41 41 H 1.07996 * 120.00230 * 179.97438 * 27 26 25 42 42 H 1.07998 * 120.00262 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2858 1.1349 0.0000 4 6 3.5367 0.7719 -0.0005 5 6 3.5931 -0.6386 -0.0003 6 6 2.2637 -1.1046 -0.0005 7 7 2.0436 -2.4183 -0.0005 8 6 3.0480 -3.2670 -0.0005 9 7 4.3105 -2.8773 -0.0011 10 6 4.6327 -1.5884 -0.0012 11 7 5.9551 -1.1898 -0.0024 12 6 7.0226 -2.1931 -0.0030 13 1 6.7112 -3.0551 0.5869 14 6 8.2900 -1.5896 0.6055 15 6 8.0462 -1.2679 2.0574 16 1 7.0833 -1.4729 2.5017 17 6 9.0519 -0.7108 2.8185 18 7 8.8389 -0.4295 4.0854 19 14 10.7170 -0.3554 2.0500 20 1 10.7197 1.0194 1.4884 21 1 11.7747 -0.4690 3.0860 22 1 10.9802 -1.3339 0.9645 23 6 7.3027 -2.6276 -1.4185 24 6 7.3020 -1.6965 -2.4403 25 6 7.5632 -2.0944 -3.7381 26 6 7.8162 -3.4248 -4.0155 27 6 7.8118 -4.3567 -2.9945 28 6 7.5549 -3.9581 -1.6960 29 1 -0.3633 -0.0007 1.0278 30 1 -0.3634 0.8904 -0.5131 31 1 -0.3635 -0.8896 -0.5144 32 1 4.3871 1.4376 -0.0003 33 1 2.8323 -4.3253 -0.0051 34 1 6.1769 -0.2454 -0.0028 35 1 9.1082 -2.3050 0.5244 36 1 8.5511 -0.6767 0.0700 37 1 9.5465 -0.0380 4.6209 38 1 7.1003 -0.6577 -2.2242 39 1 7.5671 -1.3663 -4.5357 40 1 8.0177 -3.7361 -5.0298 41 1 8.0090 -5.3961 -3.2112 42 1 7.5511 -4.6862 -0.8983 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178658456.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:36 Heat of formation + Delta-G solvation = 145.182897 kcal Electronic energy + Delta-G solvation = -26619.363981 eV Core-core repulsion = 22987.033661 eV Total energy + Delta-G solvation = -3632.330320 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.144 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.71167 -39.36814 -38.53396 -36.49293 -33.95585 -32.83880 -32.11735 -31.33563 -30.62426 -29.63565 -28.89625 -26.95506 -25.04587 -24.03021 -22.76793 -22.29868 -21.81006 -20.63628 -20.07097 -18.28114 -17.45800 -17.08337 -16.55581 -16.38475 -15.86885 -15.26211 -14.97807 -14.65730 -14.25234 -14.10360 -14.07628 -14.04058 -13.53995 -13.24287 -13.11133 -12.69804 -12.62703 -12.47530 -12.40695 -11.93748 -11.59490 -11.37352 -11.25987 -11.04810 -10.79407 -10.55105 -10.36963 -10.24764 -9.92203 -9.46510 -9.31061 -8.88164 -8.74468 -8.67851 -8.64466 -8.36285 -7.67118 -6.15499 -4.16249 1.05603 1.62476 1.66819 1.74899 2.24723 2.62519 3.21389 3.31233 3.33243 3.42541 4.09211 4.20425 4.26075 4.33745 4.38540 4.83588 4.92806 4.99398 5.12705 5.15260 5.16762 5.18462 5.23005 5.38160 5.39715 5.42985 5.51092 5.76530 5.79183 5.93907 6.13991 6.16799 6.26197 6.35727 6.47179 6.69582 6.72623 6.79898 6.86073 6.91892 7.02045 7.22877 7.26318 7.51340 7.57327 7.60240 7.93249 8.37888 8.64714 8.89826 9.44830 10.97117 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.009293 B = 0.004943 C = 0.003680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3012.227002 B = 5662.928380 C = 7606.578447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.115 3.885 2 N -0.389 5.389 3 N -0.269 5.269 4 C 0.114 3.886 5 C -0.338 4.338 6 C 0.369 3.631 7 N -0.595 5.595 8 C 0.388 3.612 9 N -0.603 5.603 10 C 0.527 3.473 11 N -0.659 5.659 12 C 0.198 3.802 13 H 0.101 0.899 14 C -0.015 4.015 15 C -0.523 4.523 16 H 0.076 0.924 17 C 0.073 3.927 18 N -0.896 5.896 19 Si 0.874 3.126 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.264 1.264 23 C -0.075 4.075 24 C -0.110 4.110 25 C -0.125 4.125 26 C -0.133 4.133 27 C -0.123 4.123 28 C -0.103 4.103 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.193 0.807 33 H 0.197 0.803 34 H 0.413 0.587 35 H 0.037 0.963 36 H 0.018 0.982 37 H 0.264 0.736 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.117 0.883 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.351 -2.774 -13.450 16.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.026 4.026 2 N -0.179 5.179 3 N -0.083 5.083 4 C -0.083 4.083 5 C -0.356 4.356 6 C 0.123 3.877 7 N -0.324 5.324 8 C 0.095 3.905 9 N -0.333 5.333 10 C 0.273 3.727 11 N -0.285 5.285 12 C 0.094 3.906 13 H 0.119 0.881 14 C -0.053 4.053 15 C -0.561 4.561 16 H 0.094 0.906 17 C -0.130 4.130 18 N -0.534 5.534 19 Si 0.701 3.299 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.189 1.189 23 C -0.076 4.076 24 C -0.128 4.128 25 C -0.143 4.143 26 C -0.151 4.151 27 C -0.141 4.141 28 C -0.121 4.121 29 H 0.088 0.912 30 H 0.104 0.896 31 H 0.106 0.894 32 H 0.210 0.790 33 H 0.213 0.787 34 H 0.251 0.749 35 H 0.055 0.945 36 H 0.037 0.963 37 H 0.074 0.926 38 H 0.133 0.867 39 H 0.132 0.868 40 H 0.132 0.868 41 H 0.135 0.865 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.335 -2.682 -13.261 17.025 hybrid contribution 1.696 0.837 -0.192 1.901 sum -8.639 -1.845 -13.454 16.094 Atomic orbital electron populations 1.21743 0.73669 1.04089 1.03092 1.48139 1.06077 1.00521 1.63139 1.76935 1.01881 1.06893 1.22588 1.23626 0.95153 0.93101 0.96374 1.19538 0.95016 0.95192 1.25833 1.18870 0.87820 0.88428 0.92563 1.67508 1.37378 0.99170 1.28360 1.24482 0.81695 0.99004 0.85343 1.68086 1.21962 1.14756 1.28512 1.18082 0.84845 0.87722 0.82010 1.44742 1.01133 1.10158 1.72452 1.20127 0.88026 0.91947 0.90483 0.88089 1.19906 0.91952 0.96299 0.97149 1.20988 1.00796 1.41851 0.92450 0.90618 1.24979 0.98443 0.94918 0.94634 1.69899 1.33647 1.43060 1.06785 0.86870 0.84390 0.79189 0.79420 1.20253 1.21292 1.18896 1.20518 0.97333 0.93500 0.96282 1.20923 1.00037 0.99315 0.92551 1.21045 1.00777 0.95988 0.96506 1.21022 1.01762 0.93524 0.98774 1.21065 1.00766 0.99163 0.93070 1.21015 0.99109 0.95435 0.96557 0.91243 0.89642 0.89354 0.79011 0.78701 0.74930 0.94507 0.96332 0.92574 0.86685 0.86768 0.86824 0.86503 0.85856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.18 11.47 59.84 0.69 1.87 16 2 N -0.39 -5.77 4.05 -67.25 -0.27 -6.05 16 3 N -0.27 -4.11 12.45 30.80 0.38 -3.73 16 4 C 0.11 1.67 11.87 -17.11 -0.20 1.47 16 5 C -0.34 -5.59 6.14 -106.82 -0.66 -6.24 16 6 C 0.37 6.10 8.04 -156.23 -1.26 4.84 16 7 N -0.59 -9.44 10.47 -13.97 -0.15 -9.58 16 8 C 0.39 5.77 12.24 -92.12 -1.13 4.64 16 9 N -0.60 -10.16 9.34 -13.62 -0.13 -10.28 16 10 C 0.53 9.02 7.52 -154.85 -1.16 7.85 16 11 N -0.66 -11.10 4.14 -54.73 -0.23 -11.32 16 12 C 0.20 3.58 2.15 -69.09 -0.15 3.43 16 13 H 0.10 1.98 7.43 -51.93 -0.39 1.60 16 14 C -0.02 -0.33 3.56 -27.89 -0.10 -0.43 16 15 C -0.52 -13.49 9.39 -34.44 -0.32 -13.81 16 16 H 0.08 2.17 7.99 -52.48 -0.42 1.75 16 17 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 18 N -0.90 -26.29 13.96 55.43 0.77 -25.52 16 19 Si 0.87 20.34 27.47 -169.99 -4.67 15.67 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.26 -5.92 6.54 56.52 0.37 -5.55 16 23 C -0.07 -1.21 4.93 -104.62 -0.52 -1.72 16 24 C -0.11 -1.65 9.33 -39.58 -0.37 -2.02 16 25 C -0.13 -1.67 10.05 -39.58 -0.40 -2.07 16 26 C -0.13 -1.68 10.05 -39.58 -0.40 -2.08 16 27 C -0.12 -1.61 10.05 -39.58 -0.40 -2.00 16 28 C -0.10 -1.53 9.67 -39.58 -0.38 -1.92 16 29 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 30 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.19 2.19 8.06 -52.49 -0.42 1.76 16 33 H 0.20 2.11 8.06 -52.49 -0.42 1.69 16 34 H 0.41 6.47 8.47 -40.82 -0.35 6.12 16 35 H 0.04 0.80 7.20 -51.93 -0.37 0.43 16 36 H 0.02 0.38 7.57 -51.92 -0.39 -0.01 16 37 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 38 H 0.12 1.62 7.71 -52.49 -0.40 1.21 16 39 H 0.11 1.27 8.06 -52.48 -0.42 0.85 16 40 H 0.11 1.15 8.06 -52.48 -0.42 0.73 16 41 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 42 H 0.12 1.73 8.04 -52.49 -0.42 1.31 16 LS Contribution 361.98 15.07 5.45 5.45 Total: -1.00 -32.38 361.98 -10.97 -43.36 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -5.29 Total: 8.31 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -6.85 Total: -6.31 kcal Atomic # 7 Polarization: -66.87 SS G_CDS: 0.38 Total: -66.48 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -4.67 Total: 15.67 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.38 -10.97 -43.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178658456.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.538 kcal (2) G-P(sol) polarization free energy of solvation -32.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds