Wall clock time and date at job start Tue Mar 31 2020 13:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.40061 * 125.87729 * 2 1 4 4 C 1.30252 * 109.69542 * 180.02562 * 3 2 1 5 5 C 1.41164 * 108.47111 * 359.97438 * 4 3 2 6 6 C 1.36318 * 125.87119 * 180.02562 * 2 1 3 7 7 N 1.33197 * 134.61544 * 359.96318 * 6 2 1 8 8 C 1.31498 * 120.68651 * 180.02562 * 7 6 2 9 9 N 1.32134 * 122.64387 * 359.97438 * 8 7 6 10 10 C 1.32857 * 121.18963 * 0.02562 * 9 8 7 11 11 N 1.38116 * 120.80769 * 180.02562 * 10 9 8 12 12 C 1.46501 * 120.00123 * 359.97438 * 11 10 9 13 13 H 1.08996 * 109.46756 * 325.00233 * 12 11 10 14 14 C 1.52996 * 109.46963 * 205.00149 * 12 11 10 15 15 C 1.50699 * 109.47371 * 65.00319 * 14 12 11 16 16 H 1.08003 * 119.99861 * 359.97438 * 15 14 12 17 17 C 1.37876 * 120.00395 * 180.02562 * 15 14 12 18 18 N 1.31513 * 120.00291 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 119.99960 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.47011 * 90.00148 * 19 17 15 21 21 H 1.48494 * 109.47267 * 210.00134 * 19 17 15 22 22 H 1.48498 * 109.47073 * 330.00501 * 19 17 15 23 23 C 1.50696 * 109.46928 * 85.00290 * 12 11 10 24 24 C 1.38241 * 119.99987 * 39.72724 * 23 12 11 25 25 C 1.38231 * 119.99637 * 179.78884 * 24 23 12 26 26 C 1.38237 * 120.00201 * 0.43964 * 25 24 23 27 27 C 1.38233 * 120.00045 * 359.80964 * 26 25 24 28 28 C 1.38237 * 120.00111 * 359.97438 * 27 26 25 29 29 H 1.09009 * 109.46918 * 269.96001 * 1 2 3 30 30 H 1.08998 * 109.47253 * 29.95340 * 1 2 3 31 31 H 1.09001 * 109.47971 * 149.95880 * 1 2 3 32 32 H 1.08001 * 125.76176 * 180.02562 * 4 3 2 33 33 H 1.08002 * 118.68193 * 180.27658 * 8 7 6 34 34 H 0.97004 * 119.99485 * 179.97438 * 11 10 9 35 35 H 1.08995 * 109.47106 * 185.00334 * 14 12 11 36 36 H 1.09008 * 109.47435 * 305.00164 * 14 12 11 37 37 H 0.96995 * 120.00586 * 179.97438 * 18 17 15 38 38 H 1.07999 * 120.00019 * 359.97438 * 24 23 12 39 39 H 1.08005 * 119.99879 * 180.27371 * 25 24 23 40 40 H 1.08004 * 120.00128 * 179.83679 * 26 25 24 41 41 H 1.07996 * 120.00230 * 179.97438 * 27 26 25 42 42 H 1.07998 * 120.00262 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2858 1.1349 0.0000 4 6 3.5367 0.7719 -0.0005 5 6 3.5931 -0.6386 -0.0003 6 6 2.2637 -1.1046 -0.0005 7 7 2.0436 -2.4183 -0.0005 8 6 3.0480 -3.2670 -0.0005 9 7 4.3105 -2.8773 -0.0011 10 6 4.6327 -1.5884 -0.0012 11 7 5.9551 -1.1898 -0.0024 12 6 7.0226 -2.1931 -0.0030 13 1 6.7112 -3.0551 0.5869 14 6 8.2900 -1.5896 0.6055 15 6 8.0462 -1.2679 2.0574 16 1 7.0833 -1.4729 2.5017 17 6 9.0519 -0.7108 2.8185 18 7 8.8389 -0.4295 4.0854 19 14 10.7170 -0.3554 2.0500 20 1 10.7197 1.0194 1.4884 21 1 11.7747 -0.4690 3.0860 22 1 10.9802 -1.3339 0.9645 23 6 7.3027 -2.6276 -1.4185 24 6 7.3020 -1.6965 -2.4403 25 6 7.5632 -2.0944 -3.7381 26 6 7.8162 -3.4248 -4.0155 27 6 7.8118 -4.3567 -2.9945 28 6 7.5549 -3.9581 -1.6960 29 1 -0.3633 -0.0007 1.0278 30 1 -0.3634 0.8904 -0.5131 31 1 -0.3635 -0.8896 -0.5144 32 1 4.3871 1.4376 -0.0003 33 1 2.8323 -4.3253 -0.0051 34 1 6.1769 -0.2454 -0.0028 35 1 9.1082 -2.3050 0.5244 36 1 8.5511 -0.6767 0.0700 37 1 9.5465 -0.0380 4.6209 38 1 7.1003 -0.6577 -2.2242 39 1 7.5671 -1.3663 -4.5357 40 1 8.0177 -3.7361 -5.0298 41 1 8.0090 -5.3961 -3.2112 42 1 7.5511 -4.6862 -0.8983 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178658456.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:36 Heat of formation + Delta-G solvation = 127.922679 kcal Electronic energy + Delta-G solvation = -26620.112440 eV Core-core repulsion = 22987.033661 eV Total energy + Delta-G solvation = -3633.078779 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.144 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.89953 -40.54459 -39.69008 -37.77292 -35.39519 -34.43213 -33.44428 -32.58883 -31.67296 -30.98842 -30.34261 -27.98586 -26.57785 -25.23088 -24.01283 -23.50177 -23.18620 -21.84182 -21.36302 -19.46505 -19.02708 -18.61839 -17.80656 -17.57528 -17.01397 -16.61939 -16.23756 -16.00375 -15.76767 -15.23036 -15.14071 -15.13581 -14.89812 -14.60707 -14.31260 -14.11526 -13.84225 -13.54341 -13.46543 -13.44069 -13.12873 -12.71388 -12.48118 -12.42353 -12.24985 -11.87986 -11.77552 -11.65413 -11.57521 -11.36892 -10.75567 -10.63751 -10.12618 -9.90460 -9.70699 -9.50043 -8.93451 -8.25656 -6.30167 -0.14919 0.47963 0.55361 0.61480 1.18801 1.37859 1.41523 1.44879 1.51366 2.13465 2.37520 2.96613 3.01540 3.10644 3.16206 3.27671 3.63380 3.75144 3.94638 3.98395 4.10438 4.25255 4.33385 4.37176 4.39704 4.45396 4.46886 4.63758 4.64098 4.77266 4.80780 4.98721 5.13838 5.20250 5.23449 5.28868 5.40651 5.58842 5.66140 5.69463 5.70308 5.78718 5.99071 6.19703 6.22508 6.29365 6.38431 6.67618 6.78059 7.34099 7.42045 8.90602 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.009293 B = 0.004943 C = 0.003680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3012.227002 B = 5662.928380 C = 7606.578447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.390 5.390 3 N -0.278 5.278 4 C 0.111 3.889 5 C -0.354 4.354 6 C 0.350 3.650 7 N -0.597 5.597 8 C 0.383 3.617 9 N -0.621 5.621 10 C 0.517 3.483 11 N -0.661 5.661 12 C 0.213 3.787 13 H 0.076 0.924 14 C -0.008 4.008 15 C -0.515 4.515 16 H 0.032 0.968 17 C 0.012 3.988 18 N -0.949 5.949 19 Si 0.942 3.058 20 H -0.265 1.265 21 H -0.291 1.291 22 H -0.247 1.247 23 C -0.092 4.092 24 C -0.122 4.122 25 C -0.128 4.128 26 C -0.129 4.129 27 C -0.123 4.123 28 C -0.119 4.119 29 H 0.079 0.921 30 H 0.105 0.895 31 H 0.098 0.902 32 H 0.218 0.782 33 H 0.232 0.768 34 H 0.416 0.584 35 H 0.035 0.965 36 H 0.032 0.968 37 H 0.264 0.736 38 H 0.118 0.882 39 H 0.138 0.862 40 H 0.145 0.855 41 H 0.143 0.857 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.982 -2.982 -16.344 18.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.180 5.180 3 N -0.092 5.092 4 C -0.085 4.085 5 C -0.372 4.372 6 C 0.103 3.897 7 N -0.327 5.327 8 C 0.091 3.909 9 N -0.351 5.351 10 C 0.264 3.736 11 N -0.287 5.287 12 C 0.109 3.891 13 H 0.094 0.906 14 C -0.046 4.046 15 C -0.553 4.553 16 H 0.051 0.949 17 C -0.185 4.185 18 N -0.590 5.590 19 Si 0.766 3.234 20 H -0.190 1.190 21 H -0.217 1.217 22 H -0.170 1.170 23 C -0.094 4.094 24 C -0.141 4.141 25 C -0.146 4.146 26 C -0.147 4.147 27 C -0.141 4.141 28 C -0.137 4.137 29 H 0.098 0.902 30 H 0.124 0.876 31 H 0.116 0.884 32 H 0.235 0.765 33 H 0.248 0.752 34 H 0.254 0.746 35 H 0.053 0.947 36 H 0.050 0.950 37 H 0.073 0.927 38 H 0.136 0.864 39 H 0.156 0.844 40 H 0.162 0.838 41 H 0.161 0.839 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.010 -2.889 -16.180 19.244 hybrid contribution 1.437 0.842 0.704 1.808 sum -8.573 -2.048 -15.477 17.811 Atomic orbital electron populations 1.22078 0.71345 1.05618 1.04248 1.48528 1.07393 0.99818 1.62260 1.76891 1.02171 1.07395 1.22787 1.24048 0.95814 0.92821 0.95775 1.19744 0.95057 0.96024 1.26371 1.19202 0.88379 0.89072 0.93057 1.67591 1.37546 0.99025 1.28498 1.25232 0.80998 1.00433 0.84283 1.68122 1.23031 1.14820 1.29123 1.18226 0.84901 0.88216 0.82300 1.44623 1.01051 1.10060 1.72983 1.19696 0.86747 0.90969 0.91724 0.90567 1.19775 0.93649 0.96877 0.94291 1.21182 0.98810 1.40486 0.94790 0.94924 1.25865 1.02684 0.95007 0.94923 1.70064 1.35067 1.45136 1.08688 0.85784 0.79041 0.79854 0.78722 1.18966 1.21750 1.17028 1.20312 0.99474 0.94488 0.95104 1.21057 1.00511 0.99335 0.93173 1.21370 0.99883 0.97074 0.96305 1.21436 1.00091 0.93064 1.00128 1.21380 0.99716 1.00741 0.92219 1.21163 0.99759 0.95037 0.97758 0.90232 0.87637 0.88351 0.76541 0.75213 0.74585 0.94664 0.95003 0.92671 0.86424 0.84387 0.83752 0.83932 0.86010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.04 11.47 127.77 1.47 3.50 16 2 N -0.39 -11.30 4.05 -366.67 -1.48 -12.78 16 3 N -0.28 -8.32 12.45 -56.46 -0.70 -9.03 16 4 C 0.11 3.24 11.87 85.65 1.02 4.26 16 5 C -0.35 -11.80 6.14 -21.29 -0.13 -11.93 16 6 C 0.35 11.47 8.04 134.14 1.08 12.55 16 7 N -0.60 -18.68 10.47 -198.10 -2.07 -20.75 16 8 C 0.38 11.25 12.24 180.87 2.21 13.46 16 9 N -0.62 -21.18 9.34 -197.01 -1.84 -23.02 16 10 C 0.52 18.05 7.52 133.64 1.01 19.05 16 11 N -0.66 -22.75 4.14 -327.06 -1.35 -24.10 16 12 C 0.21 7.83 2.15 44.24 0.09 7.93 16 13 H 0.08 3.14 7.43 -2.39 -0.02 3.12 16 14 C -0.01 -0.35 3.56 29.85 0.11 -0.24 16 15 C -0.51 -27.36 9.39 25.60 0.24 -27.12 16 16 H 0.03 1.97 7.99 -2.91 -0.02 1.95 16 17 C 0.01 0.69 5.47 84.65 0.46 1.15 16 18 N -0.95 -57.57 13.96 21.45 0.30 -57.27 16 19 Si 0.94 41.89 27.47 68.60 1.88 43.78 16 20 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 21 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 22 H -0.25 -10.18 6.54 99.48 0.65 -9.53 16 23 C -0.09 -2.92 4.93 -19.86 -0.10 -3.02 16 24 C -0.12 -3.48 9.33 22.27 0.21 -3.27 16 25 C -0.13 -3.05 10.05 22.27 0.22 -2.83 16 26 C -0.13 -2.81 10.05 22.27 0.22 -2.58 16 27 C -0.12 -2.88 10.05 22.27 0.22 -2.65 16 28 C -0.12 -3.42 9.67 22.27 0.22 -3.20 16 29 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 30 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.22 4.83 8.06 -2.91 -0.02 4.81 16 33 H 0.23 4.70 8.06 -2.91 -0.02 4.68 16 34 H 0.42 13.30 8.47 -92.71 -0.79 12.51 16 35 H 0.04 1.51 7.20 -2.39 -0.02 1.50 16 36 H 0.03 1.27 7.57 -2.38 -0.02 1.25 16 37 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 38 H 0.12 3.17 7.71 -2.91 -0.02 3.14 16 39 H 0.14 2.56 8.06 -2.91 -0.02 2.53 16 40 H 0.14 2.24 8.06 -2.91 -0.02 2.21 16 41 H 0.14 2.54 8.06 -2.91 -0.02 2.51 16 42 H 0.12 3.41 8.04 -2.91 -0.02 3.39 16 Total: -1.00 -71.53 361.98 3.49 -68.04 By element: Atomic # 1 Polarization: 29.87 SS G_CDS: 0.21 Total: 30.08 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: 8.55 Total: 5.06 kcal Atomic # 7 Polarization: -139.79 SS G_CDS: -7.16 Total: -146.95 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 1.88 Total: 43.78 kcal Total: -71.53 3.49 -68.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178658456.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.961 kcal (2) G-P(sol) polarization free energy of solvation -71.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds