Wall clock time and date at job start Tue Mar 31 2020 14:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42904 * 114.00380 * 2 1 4 4 C 1.52999 * 109.47161 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47053 * 179.97438 * 4 3 2 6 6 O 1.42900 * 109.47385 * 179.97438 * 5 4 3 7 7 C 1.42898 * 114.00423 * 180.02562 * 6 5 4 8 8 C 1.50705 * 109.47380 * 180.02562 * 7 6 5 9 9 O 1.21279 * 119.99653 * 0.02562 * 8 7 6 10 10 N 1.34769 * 119.99900 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99695 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.46837 * 180.02562 * 11 10 8 13 13 C 1.38305 * 119.93408 * 89.99748 * 12 11 10 14 14 C 1.38101 * 120.07071 * 179.97438 * 13 12 11 15 15 C 1.38876 * 119.92956 * 0.02562 * 14 13 12 16 16 O 1.35750 * 120.06861 * 180.02562 * 15 14 13 17 17 C 1.34828 * 117.00075 * 5.53840 * 16 15 14 18 18 H 1.08003 * 120.00029 * 354.94359 * 17 16 15 19 19 C 1.38659 * 120.00122 * 174.94542 * 17 16 15 20 20 N 1.31558 * 119.99705 * 180.02562 * 19 17 16 21 21 Si 1.86795 * 120.00035 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47181 * 89.99980 * 21 19 17 23 23 H 1.48498 * 109.47260 * 210.00361 * 21 19 17 24 24 H 1.48502 * 109.47130 * 330.00179 * 21 19 17 25 25 C 1.38880 * 119.86555 * 0.27954 * 15 14 13 26 26 C 1.38102 * 119.92551 * 359.44514 * 25 15 14 27 27 H 1.09001 * 109.46950 * 300.00159 * 1 2 3 28 28 H 1.09006 * 109.46696 * 59.99692 * 1 2 3 29 29 H 1.08994 * 109.47143 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46922 * 60.00367 * 3 2 1 31 31 H 1.08995 * 109.47050 * 300.00254 * 3 2 1 32 32 H 1.09008 * 109.46832 * 60.00020 * 4 3 2 33 33 H 1.08995 * 109.47475 * 300.00151 * 4 3 2 34 34 H 1.09008 * 109.46964 * 60.00495 * 5 4 3 35 35 H 1.08995 * 109.47425 * 300.00576 * 5 4 3 36 36 H 1.09003 * 109.46912 * 60.00451 * 7 6 5 37 37 H 1.08996 * 109.46880 * 300.00566 * 7 6 5 38 38 H 0.96998 * 120.00328 * 0.02562 * 10 8 7 39 39 H 1.08986 * 109.47314 * 59.99652 * 11 10 8 40 40 H 1.09005 * 109.46923 * 299.99397 * 11 10 8 41 41 H 1.07999 * 119.96326 * 0.02562 * 13 12 11 42 42 H 1.07997 * 120.03156 * 180.02562 * 14 13 12 43 43 H 0.96997 * 119.99350 * 179.97438 * 20 19 17 44 44 H 1.07996 * 120.04097 * 179.72435 * 25 15 14 45 45 H 1.07997 * 119.96688 * 180.27743 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1579 2.5822 0.0000 6 8 5.5824 2.4694 0.0012 7 6 6.2650 3.7248 0.0013 8 6 7.7533 3.4875 0.0020 9 8 8.1866 2.3548 0.0019 10 7 8.6024 4.5340 0.0027 11 6 10.0492 4.3033 0.0028 12 6 10.7690 5.6273 0.0043 13 6 11.0983 6.2324 1.2035 14 6 11.7583 7.4454 1.2082 15 6 12.0910 8.0579 0.0070 16 8 12.7402 9.2501 0.0083 17 6 13.1350 9.7308 1.2045 18 1 12.8600 9.2135 2.1118 19 6 13.8941 10.8893 1.2699 20 7 14.2797 11.3580 2.4371 21 14 14.3705 11.7836 -0.2994 22 1 13.3255 12.7836 -0.6359 23 1 15.6703 12.4736 -0.1008 24 1 14.4943 10.8045 -1.4090 25 6 11.7533 7.4509 -1.1956 26 6 11.0983 6.2351 -1.1936 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.6888 1.8463 0.8900 31 1 1.6887 1.8464 -0.8899 32 1 3.8575 0.6434 -0.8892 33 1 3.8568 0.6438 0.8908 34 1 3.8360 3.1237 0.8896 35 1 3.8366 3.1226 -0.8903 36 1 5.9864 4.2897 0.8909 37 1 5.9878 4.2891 -0.8890 38 1 8.2558 5.4399 0.0032 39 1 10.3272 3.7391 -0.8873 40 1 10.3269 3.7382 0.8926 41 1 10.8397 5.7554 2.1373 42 1 12.0155 7.9172 2.1450 43 1 14.8111 12.1682 2.4827 44 1 12.0066 7.9268 -2.1314 45 1 10.8394 5.7602 -2.1284 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180292949.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:45 Heat of formation + Delta-G solvation = -134.069963 kcal Electronic energy + Delta-G solvation = -25148.732953 eV Core-core repulsion = 21132.398899 eV Total energy + Delta-G solvation = -4016.334055 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.93936 -39.27146 -38.59397 -37.80851 -36.99250 -34.50027 -33.24327 -32.50920 -30.61391 -30.36088 -28.51234 -27.27215 -25.90289 -25.03912 -24.24695 -22.22122 -22.10429 -20.66084 -20.63055 -18.03108 -17.63854 -17.48506 -17.09904 -17.07203 -16.63617 -16.29450 -15.66057 -15.28877 -15.10777 -14.86614 -14.74143 -14.23597 -14.14411 -13.91982 -13.79907 -13.49797 -13.02295 -12.98230 -12.77475 -12.53387 -12.29606 -12.28184 -11.98854 -11.91331 -11.52950 -11.49563 -11.42705 -10.99772 -10.89593 -10.79408 -10.24580 -10.17455 -10.06757 -9.88743 -9.51557 -9.06850 -8.97894 -8.41691 -7.51676 -6.52610 -4.19751 1.88061 1.99109 2.54635 2.63966 3.15168 3.18292 3.28022 3.32516 3.92101 4.14218 4.36365 4.43987 4.58431 4.63345 4.70506 4.74784 4.79390 4.83548 4.86360 4.87946 4.96085 4.97256 5.00075 5.07832 5.12096 5.20145 5.31714 5.52504 5.64416 5.69207 5.71321 5.83402 5.99744 6.21181 6.37455 6.43025 6.62388 6.64293 6.71418 6.86609 7.08857 7.15233 7.45893 7.49137 7.67680 7.91346 8.16976 8.81814 9.42138 10.54483 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.031844 B = 0.001520 C = 0.001501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.075761 B =18413.555621 C =18646.024386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.391 6.391 3 C 0.065 3.935 4 C -0.120 4.120 5 C 0.065 3.935 6 O -0.361 6.361 7 C 0.044 3.956 8 C 0.510 3.490 9 O -0.525 6.525 10 N -0.721 5.721 11 C 0.179 3.821 12 C -0.207 4.207 13 C -0.052 4.052 14 C -0.224 4.224 15 C 0.167 3.833 16 O -0.212 6.212 17 C -0.392 4.392 18 H 0.108 0.892 19 C 0.065 3.935 20 N -0.875 5.875 21 Si 0.906 3.094 22 H -0.273 1.273 23 H -0.281 1.281 24 H -0.259 1.259 25 C -0.195 4.195 26 C -0.056 4.056 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.087 0.913 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.402 0.598 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.111 0.889 42 H 0.135 0.865 43 H 0.281 0.719 44 H 0.118 0.882 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.883 -14.132 -5.389 27.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.012 4.012 4 C -0.157 4.157 5 C -0.012 4.012 6 O -0.279 6.279 7 C -0.036 4.036 8 C 0.294 3.706 9 O -0.400 6.400 10 N -0.375 5.375 11 C 0.058 3.942 12 C -0.209 4.209 13 C -0.070 4.070 14 C -0.243 4.243 15 C 0.114 3.886 16 O -0.117 6.117 17 C -0.468 4.468 18 H 0.125 0.875 19 C -0.139 4.139 20 N -0.512 5.512 21 Si 0.731 3.269 22 H -0.198 1.198 23 H -0.207 1.207 24 H -0.183 1.183 25 C -0.214 4.214 26 C -0.075 4.075 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.106 0.894 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.237 0.763 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.129 0.871 42 H 0.152 0.848 43 H 0.091 0.909 44 H 0.137 0.863 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -22.149 -14.975 -5.437 27.283 hybrid contribution -0.247 1.570 -0.341 1.626 sum -22.396 -13.404 -5.777 26.733 Atomic orbital electron populations 1.22763 0.80708 1.02971 1.00060 1.87882 1.19923 1.27738 1.95439 1.22360 0.93423 0.84937 1.00437 1.21348 0.92526 0.96688 1.05170 1.22363 0.81019 0.97268 1.00571 1.87999 1.17470 1.26989 1.95458 1.22228 0.91077 0.87543 1.02721 1.20212 0.87868 0.85411 0.77076 1.90732 1.78718 1.22436 1.48164 1.46211 1.06999 1.08997 1.75282 1.20000 0.77615 0.94481 1.02151 1.19275 1.09465 0.98419 0.93723 1.20709 0.95618 0.94126 0.96596 1.21282 1.06364 0.97885 0.98801 1.19188 0.90890 0.85127 0.93433 1.83572 1.64410 1.29672 1.34007 1.20794 1.33454 1.09775 0.82748 0.87482 1.24489 0.95107 0.96081 0.98212 1.69643 1.35292 1.22509 1.23714 0.86173 0.78074 0.79892 0.82744 1.19812 1.20675 1.18297 1.20213 1.07710 0.97416 0.96093 1.20543 0.96343 0.93869 0.96715 0.93954 0.93974 0.89450 0.93019 0.93030 0.89965 0.89939 0.92852 0.92867 0.90146 0.90190 0.76344 0.91317 0.91307 0.87056 0.84771 0.90881 0.86347 0.86732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.39 -3.28 10.70 -35.23 -0.38 -3.65 16 3 C 0.07 0.42 5.94 37.16 0.22 0.64 16 4 C -0.12 -0.93 5.95 -26.73 -0.16 -1.09 16 5 C 0.06 0.47 5.94 37.16 0.22 0.69 16 6 O -0.36 -4.04 9.88 -55.14 -0.54 -4.58 16 7 C 0.04 0.40 6.42 36.01 0.23 0.63 16 8 C 0.51 6.44 7.91 -10.99 -0.09 6.35 16 9 O -0.53 -9.07 16.50 -14.35 -0.24 -9.31 16 10 N -0.72 -8.15 5.55 -61.47 -0.34 -8.49 16 11 C 0.18 2.35 5.80 -5.19 -0.03 2.32 16 12 C -0.21 -3.07 5.25 -104.57 -0.55 -3.62 16 13 C -0.05 -0.85 9.69 -39.61 -0.38 -1.23 16 14 C -0.22 -4.47 9.17 -39.40 -0.36 -4.83 16 15 C 0.17 3.59 6.65 -39.11 -0.26 3.33 16 16 O -0.21 -5.33 8.59 0.05 0.00 -5.33 16 17 C -0.39 -10.60 9.95 30.89 0.31 -10.29 16 18 H 0.11 2.95 5.44 -52.48 -0.29 2.66 16 19 C 0.07 1.77 5.49 -17.51 -0.10 1.67 16 20 N -0.87 -24.45 13.96 55.48 0.77 -23.67 16 21 Si 0.91 20.87 28.62 -169.99 -4.86 16.01 16 22 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.26 -5.99 7.11 56.52 0.40 -5.58 16 25 C -0.20 -3.54 9.99 -39.39 -0.39 -3.94 16 26 C -0.06 -0.85 9.69 -39.61 -0.38 -1.24 16 27 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 28 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.08 0.71 8.14 -51.92 -0.42 0.29 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.31 8.14 -51.92 -0.42 -0.12 16 35 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.40 3.71 8.46 -40.82 -0.35 3.37 16 39 H 0.07 0.91 8.08 -51.94 -0.42 0.49 16 40 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 41 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 42 H 0.13 2.84 5.64 -52.49 -0.30 2.55 16 43 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16 44 H 0.12 2.01 8.06 -52.49 -0.42 1.59 16 45 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 387.71 15.07 5.84 5.84 Total: -1.00 -32.59 387.71 -7.18 -39.77 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -6.82 Total: 2.74 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: -0.61 Total: -9.33 kcal Atomic # 7 Polarization: -32.59 SS G_CDS: 0.43 Total: -32.16 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -1.16 Total: -22.87 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.86 Total: 16.01 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.59 -7.18 -39.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180292949.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.297 kcal (2) G-P(sol) polarization free energy of solvation -32.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds