Wall clock time and date at job start Tue Mar 31 2020 14:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34228 * 117.00025 * 2 1 4 4 O 1.20824 * 120.00420 * 359.97438 * 3 2 1 5 5 C 1.50704 * 120.00172 * 179.97438 * 3 2 1 6 6 N 1.46497 * 109.47524 * 179.97438 * 5 3 2 7 7 C 1.36980 * 120.00129 * 274.52876 * 6 5 3 8 8 H 1.07996 * 120.00133 * 46.89662 * 7 6 5 9 9 C 1.38979 * 119.99833 * 226.89716 * 7 6 5 10 10 N 1.31415 * 119.99907 * 32.34221 * 9 7 6 11 11 Si 1.86793 * 120.00168 * 212.34063 * 9 7 6 12 12 H 1.48498 * 109.47060 * 5.00890 * 11 9 7 13 13 H 1.48508 * 109.46982 * 125.00525 * 11 9 7 14 14 H 1.48497 * 109.47524 * 245.00402 * 11 9 7 15 15 C 1.34777 * 119.99970 * 94.52110 * 6 5 3 16 16 O 1.21623 * 120.00234 * 184.90627 * 15 6 5 17 17 C 1.47363 * 119.99834 * 5.18257 * 15 6 5 18 18 C 1.38105 * 126.42090 * 320.74534 * 17 15 6 19 19 N 1.34292 * 107.40176 * 179.97438 * 18 17 15 20 20 C 1.46498 * 125.74916 * 179.97438 * 19 18 17 21 21 C 1.53007 * 109.46818 * 75.75890 * 20 19 18 22 22 C 1.53001 * 109.47149 * 195.75350 * 20 19 18 23 23 C 1.52997 * 109.47527 * 315.75850 * 20 19 18 24 24 N 1.39933 * 108.49636 * 0.02562 * 19 18 17 25 25 C 1.30440 * 108.91532 * 359.75193 * 24 19 18 26 26 C 1.50696 * 125.98814 * 180.22432 * 25 24 19 27 27 H 1.09002 * 109.46917 * 59.99952 * 1 2 3 28 28 H 1.08998 * 109.47361 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46815 * 300.00503 * 1 2 3 30 30 H 1.09001 * 109.46981 * 59.99354 * 5 3 2 31 31 H 1.09001 * 109.46945 * 300.00286 * 5 3 2 32 32 H 0.96999 * 120.00376 * 184.97342 * 10 9 7 33 33 H 1.08002 * 126.30124 * 359.94731 * 18 17 15 34 34 H 1.08992 * 109.47443 * 55.06784 * 21 20 19 35 35 H 1.09003 * 109.46877 * 175.06445 * 21 20 19 36 36 H 1.08997 * 109.47374 * 295.06156 * 21 20 19 37 37 H 1.09000 * 109.46536 * 60.00190 * 22 20 19 38 38 H 1.08995 * 109.47393 * 180.02562 * 22 20 19 39 39 H 1.08995 * 109.47198 * 300.00570 * 22 20 19 40 40 H 1.09002 * 109.46825 * 65.08373 * 23 20 19 41 41 H 1.08996 * 109.47387 * 185.08163 * 23 20 19 42 42 H 1.09001 * 109.46596 * 305.08661 * 23 20 19 43 43 H 1.08997 * 109.47110 * 270.18839 * 26 25 24 44 44 H 1.09008 * 109.46986 * 30.18678 * 26 25 24 45 45 H 1.09001 * 109.47477 * 150.18482 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9818 2.6797 -0.0002 7 6 4.0867 3.3623 -1.1831 8 1 3.2942 3.3007 -1.9142 9 6 5.2130 4.1342 -1.4425 10 7 6.3821 3.7721 -0.9638 11 14 5.0650 5.6861 -2.4714 12 1 3.6355 5.9371 -2.7858 13 1 5.6143 6.8379 -1.7117 14 1 5.8275 5.5174 -3.7344 15 6 4.2606 3.3006 1.1631 16 8 4.5186 4.4891 1.1716 17 6 4.2589 2.5381 2.4242 18 6 3.3690 1.5436 2.7798 19 7 3.7179 1.1108 4.0022 20 6 3.0404 0.0582 4.7632 21 6 3.4112 -1.3087 4.1843 22 6 3.4763 0.1269 6.2282 23 6 1.5261 0.2569 4.6718 24 7 4.8370 1.8356 4.4271 25 6 5.1705 2.6840 3.4941 26 6 6.3237 3.6525 3.5490 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 3.9564 0.7805 -0.8891 31 1 3.9557 0.7809 0.8908 32 1 7.1542 4.3470 -1.0831 33 1 2.5441 1.1809 2.1845 34 1 4.4959 -1.4146 4.1688 35 1 2.9783 -2.0948 4.8030 36 1 3.0236 -1.3906 3.1689 37 1 3.2122 1.1007 6.6405 38 1 2.9726 -0.6566 6.7943 39 1 4.5551 -0.0147 6.2933 40 1 1.2032 0.1184 3.6400 41 1 1.0250 -0.4707 5.3101 42 1 1.2716 1.2647 5.0001 43 1 5.9886 4.5919 3.9889 44 1 7.1235 3.2310 4.1581 45 1 6.6932 3.8352 2.5400 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182511038.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:31 Heat of formation + Delta-G solvation = -50.731823 kcal Electronic energy + Delta-G solvation = -29548.431950 eV Core-core repulsion = 25568.004459 eV Total energy + Delta-G solvation = -3980.427491 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.64208 -41.47111 -39.84560 -37.79292 -37.47179 -36.10258 -34.15469 -33.05358 -31.32957 -30.07366 -28.93481 -28.35373 -28.12493 -27.77720 -26.59926 -23.82281 -22.53232 -21.87659 -21.18569 -19.86444 -18.88296 -18.68168 -18.05887 -17.64027 -17.16225 -16.96061 -16.69811 -16.35954 -15.90900 -15.42610 -15.21487 -14.99996 -14.74405 -14.50682 -14.37673 -14.24078 -13.79957 -13.65729 -13.60277 -13.25528 -13.14123 -13.06514 -13.01193 -12.95845 -12.93498 -12.85148 -12.72472 -12.65602 -12.20813 -12.13424 -12.11128 -11.76677 -11.67831 -11.63565 -10.73043 -10.35711 -10.24919 -9.53444 -9.40003 -8.35971 -6.05160 0.60138 1.10782 1.24658 1.34824 1.39676 1.46150 1.53417 1.70150 2.26004 2.61715 3.08993 3.13576 3.36555 3.54369 3.75630 3.80773 3.87511 3.95976 4.12338 4.15225 4.34560 4.35432 4.37513 4.54486 4.56696 4.60348 4.61695 4.72074 4.73235 4.73683 4.74760 4.81521 4.84337 4.92923 4.99836 5.07614 5.24508 5.28135 5.31046 5.47536 5.56945 5.98536 6.15410 6.60358 6.76455 6.91620 7.08075 7.49713 8.16522 8.70706 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012599 B = 0.005665 C = 0.004217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.855032 B = 4941.135463 C = 6638.946465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.356 6.356 3 C 0.442 3.558 4 O -0.523 6.523 5 C 0.103 3.897 6 N -0.441 5.441 7 C -0.371 4.371 8 H 0.068 0.932 9 C 0.054 3.946 10 N -0.856 5.856 11 Si 0.950 3.050 12 H -0.272 1.272 13 H -0.289 1.289 14 H -0.265 1.265 15 C 0.559 3.441 16 O -0.590 6.590 17 C -0.291 4.291 18 C 0.092 3.908 19 N -0.340 5.340 20 C 0.161 3.839 21 C -0.157 4.157 22 C -0.138 4.138 23 C -0.160 4.160 24 N -0.299 5.299 25 C 0.102 3.898 26 C -0.060 4.060 27 H 0.053 0.947 28 H 0.142 0.858 29 H 0.061 0.939 30 H 0.123 0.877 31 H 0.120 0.880 32 H 0.267 0.733 33 H 0.177 0.823 34 H 0.053 0.947 35 H 0.113 0.887 36 H 0.066 0.934 37 H 0.050 0.950 38 H 0.108 0.892 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.119 0.881 42 H 0.050 0.950 43 H 0.078 0.922 44 H 0.092 0.908 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.918 -16.085 11.289 21.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.272 6.272 3 C 0.284 3.716 4 O -0.411 6.411 5 C -0.023 4.023 6 N -0.162 5.162 7 C -0.497 4.497 8 H 0.085 0.915 9 C -0.155 4.155 10 N -0.489 5.489 11 Si 0.775 3.225 12 H -0.196 1.196 13 H -0.216 1.216 14 H -0.190 1.190 15 C 0.349 3.651 16 O -0.472 6.472 17 C -0.307 4.307 18 C -0.060 4.060 19 N -0.120 5.120 20 C 0.081 3.919 21 C -0.215 4.215 22 C -0.195 4.195 23 C -0.217 4.217 24 N -0.122 5.122 25 C -0.064 4.064 26 C -0.119 4.119 27 H 0.072 0.928 28 H 0.160 0.840 29 H 0.080 0.920 30 H 0.141 0.859 31 H 0.137 0.863 32 H 0.076 0.924 33 H 0.193 0.807 34 H 0.073 0.927 35 H 0.132 0.868 36 H 0.085 0.915 37 H 0.069 0.931 38 H 0.127 0.873 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.138 0.862 42 H 0.070 0.930 43 H 0.097 0.903 44 H 0.111 0.889 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.605 -15.782 12.482 21.884 hybrid contribution -0.338 1.692 -1.687 2.413 sum -8.943 -14.090 10.795 19.876 Atomic orbital electron populations 1.23589 0.75022 1.05928 1.02276 1.86525 1.24832 1.31876 1.83987 1.24925 0.93097 0.81636 0.71964 1.90684 1.67376 1.37738 1.45343 1.21417 0.86543 0.87533 1.06773 1.42899 1.60883 1.07467 1.04911 1.18877 1.02328 1.32196 0.96305 0.91452 1.25796 0.93125 0.99979 0.96628 1.70102 0.99227 1.34741 1.44826 0.85623 0.78483 0.80289 0.78122 1.19619 1.21575 1.18972 1.17650 0.78979 0.85947 0.82494 1.90525 1.52859 1.17122 1.86740 1.20574 1.04347 1.06353 0.99400 1.22849 0.99126 0.95164 0.88820 1.49071 1.22018 1.28782 1.12151 1.21396 0.92603 0.84882 0.93012 1.22304 1.02507 0.94064 1.02614 1.21911 1.02691 1.03339 0.91571 1.22317 0.91539 1.03761 1.04131 1.76921 1.03047 1.10007 1.22216 1.22511 0.97229 0.96306 0.90305 1.20074 0.93262 0.95840 1.02708 0.92842 0.84000 0.91990 0.85944 0.86296 0.92352 0.80666 0.92734 0.86799 0.91464 0.93108 0.87321 0.92132 0.91741 0.86221 0.93045 0.90348 0.88882 0.92584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.50 10.56 113.37 1.20 1.69 16 2 O -0.36 -9.73 10.57 -51.40 -0.54 -10.27 16 3 C 0.44 16.35 5.84 71.24 0.42 16.77 16 4 O -0.52 -23.57 16.10 21.97 0.35 -23.21 16 5 C 0.10 4.17 5.50 85.63 0.47 4.64 16 6 N -0.44 -23.30 2.00 -643.37 -1.29 -24.59 16 7 C -0.37 -21.53 8.87 84.07 0.75 -20.79 16 8 H 0.07 3.93 8.01 -2.91 -0.02 3.91 16 9 C 0.05 3.12 3.98 84.93 0.34 3.45 16 10 N -0.86 -50.83 13.20 21.67 0.29 -50.55 16 11 Si 0.95 47.31 29.66 68.60 2.03 49.35 16 12 H -0.27 -13.49 7.11 99.48 0.71 -12.78 16 13 H -0.29 -14.83 7.11 99.48 0.71 -14.12 16 14 H -0.26 -12.06 7.11 99.48 0.71 -11.35 16 15 C 0.56 30.73 6.76 86.65 0.59 31.32 16 16 O -0.59 -37.19 15.21 -4.11 -0.06 -37.26 16 17 C -0.29 -13.17 5.36 -20.15 -0.11 -13.27 16 18 C 0.09 3.27 8.20 84.29 0.69 3.96 16 19 N -0.34 -10.39 3.41 -306.04 -1.04 -11.44 16 20 C 0.16 3.19 1.23 3.61 0.00 3.20 16 21 C -0.16 -2.39 8.73 71.98 0.63 -1.77 16 22 C -0.14 -2.36 8.08 71.98 0.58 -1.78 16 23 C -0.16 -2.51 8.18 71.98 0.59 -1.92 16 24 N -0.30 -10.75 11.56 -46.66 -0.54 -11.29 16 25 C 0.10 4.26 7.26 43.52 0.32 4.58 16 26 C -0.06 -2.34 9.94 71.23 0.71 -1.63 16 27 H 0.05 1.17 8.13 -2.39 -0.02 1.15 16 28 H 0.14 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.06 1.20 8.13 -2.38 -0.02 1.19 16 30 H 0.12 4.65 8.08 -2.39 -0.02 4.63 16 31 H 0.12 4.31 5.12 -2.39 -0.01 4.29 16 32 H 0.27 15.11 8.32 -92.71 -0.77 14.34 16 33 H 0.18 5.72 4.64 -2.91 -0.01 5.71 16 34 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.06 1.21 8.03 -2.39 -0.02 1.19 16 40 H 0.06 1.03 7.56 -2.39 -0.02 1.01 16 41 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 44 H 0.09 2.97 8.14 -2.38 -0.02 2.95 16 45 H 0.06 2.56 7.77 -2.39 -0.02 2.54 16 Total: -1.00 -82.25 376.72 7.35 -74.89 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: 0.99 Total: 15.93 kcal Atomic # 6 Polarization: 21.28 SS G_CDS: 7.16 Total: 28.44 kcal Atomic # 7 Polarization: -95.29 SS G_CDS: -2.58 Total: -97.87 kcal Atomic # 8 Polarization: -70.49 SS G_CDS: -0.25 Total: -70.74 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.35 kcal Total: -82.25 7.35 -74.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182511038.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.160 kcal (2) G-P(sol) polarization free energy of solvation -82.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds