Wall clock time and date at job start Tue Mar 31 2020 13:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 S 1.81403 * 109.47022 * 2 1 4 4 C 1.76206 * 102.99957 * 180.02562 * 3 2 1 5 5 C 1.39197 * 119.71167 * 180.25200 * 4 3 2 6 6 C 1.38270 * 119.09364 * 180.25405 * 5 4 3 7 7 C 1.50700 * 120.74295 * 179.78353 * 6 5 4 8 8 N 1.46498 * 109.46769 * 269.71203 * 7 6 5 9 9 C 1.34777 * 119.99828 * 179.72341 * 8 7 6 10 10 O 1.21593 * 119.99949 * 0.28071 * 9 8 7 11 11 N 1.34777 * 120.00128 * 180.27942 * 9 8 7 12 12 C 1.46499 * 120.00065 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.47198 * 179.97438 * 12 11 9 14 14 C 1.52992 * 109.47321 * 179.97438 * 13 12 11 15 15 C 1.50697 * 109.47554 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99751 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00505 * 180.02562 * 15 14 13 18 18 N 1.31510 * 119.99687 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00201 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47135 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47080 * 119.99899 * 19 17 15 22 22 H 1.48497 * 109.47104 * 240.00206 * 19 17 15 23 23 C 1.38908 * 118.51010 * 359.50113 * 6 5 4 24 24 C 1.38027 * 119.34296 * 0.25765 * 23 6 5 25 25 N 1.31964 * 120.86160 * 359.97438 * 24 23 6 26 26 H 1.08993 * 109.47576 * 59.99826 * 1 2 3 27 27 H 1.09003 * 109.46743 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46703 * 299.99728 * 1 2 3 29 29 H 1.09000 * 109.47062 * 240.00316 * 2 1 3 30 30 H 1.08993 * 109.47576 * 120.00174 * 2 1 3 31 31 H 1.08000 * 120.45382 * 0.02562 * 5 4 3 32 32 H 1.09004 * 109.47210 * 149.71561 * 7 6 5 33 33 H 1.08994 * 109.47121 * 29.71530 * 7 6 5 34 34 H 0.97001 * 120.00384 * 0.02562 * 8 7 6 35 35 H 0.97000 * 119.99549 * 359.97438 * 11 9 8 36 36 H 1.09000 * 109.47602 * 299.99940 * 12 11 9 37 37 H 1.09006 * 109.46868 * 59.99976 * 12 11 9 38 38 H 1.09000 * 109.47211 * 300.00689 * 13 12 11 39 39 H 1.09007 * 109.46376 * 60.00147 * 13 12 11 40 40 H 1.09000 * 109.47686 * 300.00577 * 14 13 12 41 41 H 1.08998 * 109.47284 * 60.00513 * 14 13 12 42 42 H 0.97010 * 119.99934 * 180.02562 * 18 17 15 43 43 H 1.07997 * 120.32643 * 180.27812 * 23 6 5 44 44 H 1.07996 * 119.57377 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 6 3.8855 1.5117 -0.0008 5 6 4.7072 2.6352 0.0044 6 6 6.0794 2.4646 -0.0017 7 6 7.0037 3.6549 -0.0013 8 7 7.3031 4.0409 -1.3824 9 6 8.1114 5.0910 -1.6284 10 8 8.5961 5.7148 -0.7040 11 7 8.3824 5.4497 -2.8990 12 6 9.2614 6.5908 -3.1664 13 6 9.4031 6.7822 -4.6778 14 6 10.3206 7.9743 -4.9570 15 6 10.4597 8.1633 -6.4456 16 1 9.9449 7.4997 -7.1246 17 6 11.2443 9.1832 -6.9408 18 7 11.8716 9.9909 -6.1139 19 14 11.4161 9.4179 -8.7860 20 1 10.6156 8.3860 -9.4929 21 1 10.9245 10.7680 -9.1612 22 1 12.8444 9.2865 -9.1707 23 6 6.5867 1.1715 -0.0020 24 6 5.7137 0.1024 -0.0018 25 7 4.4081 0.2946 -0.0008 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 4.2789 3.6267 0.0092 32 1 7.9295 3.3958 0.5124 33 1 6.5236 4.4875 0.5128 34 1 6.9162 3.5435 -2.1198 35 1 7.9960 4.9518 -3.6364 36 1 8.8334 7.4906 -2.7244 37 1 10.2428 6.4033 -2.7306 38 1 9.8313 5.8824 -5.1194 39 1 8.4218 6.9695 -5.1138 40 1 9.8921 8.8740 -4.5154 41 1 11.3019 7.7875 -4.5209 42 1 12.4233 10.7088 -6.4623 43 1 7.6537 1.0044 -0.0021 44 1 6.1041 -0.9045 -0.0026 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186557161.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:10 Heat of formation + Delta-G solvation = -20.711315 kcal Electronic energy + Delta-G solvation = -22908.786718 eV Core-core repulsion = 19372.413885 eV Total energy + Delta-G solvation = -3536.372833 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.69609 -39.70993 -36.01086 -35.08252 -33.42319 -33.30211 -32.62001 -31.77654 -31.03524 -27.57566 -26.11896 -24.78898 -23.38762 -23.20604 -22.43880 -20.89932 -20.41137 -18.54236 -17.55436 -17.11255 -16.69323 -16.43150 -15.98404 -15.69236 -15.57751 -15.38979 -14.72337 -14.62490 -14.43476 -14.23185 -14.15120 -13.96479 -13.12059 -13.07096 -12.84479 -12.62592 -12.28939 -12.00611 -11.90058 -11.80623 -11.66723 -10.92197 -10.82609 -10.73725 -10.57414 -10.54828 -10.25843 -10.10133 -10.02692 -9.86454 -9.44508 -9.30798 -9.11102 -8.64438 -8.37424 -8.02547 -6.01873 -4.04871 0.48950 0.62266 0.98554 1.79468 2.75257 3.27152 3.29892 3.31390 3.37454 3.40934 3.96117 4.12580 4.36731 4.45033 4.45724 4.45991 4.52862 4.60959 4.69999 4.89858 5.08976 5.25871 5.26990 5.28526 5.30687 5.34057 5.42782 5.55812 5.69906 5.80773 5.83331 6.06964 6.17438 6.28897 6.50859 6.61973 6.77254 7.01236 7.02676 7.24382 7.64175 7.76685 7.97128 8.08877 8.38071 8.69267 9.02039 9.59369 11.09407 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.020506 B = 0.001661 C = 0.001594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.144243 B =16857.358198 C =17562.589730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.098 4.098 3 S -0.078 6.078 4 C 0.119 3.881 5 C -0.131 4.131 6 C -0.042 4.042 7 C 0.181 3.819 8 N -0.748 5.748 9 C 0.701 3.299 10 O -0.591 6.591 11 N -0.740 5.740 12 C 0.135 3.865 13 C -0.120 4.120 14 C 0.023 3.977 15 C -0.522 4.522 16 H 0.056 0.944 17 C 0.057 3.943 18 N -0.893 5.893 19 Si 0.893 3.107 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.159 4.159 24 C 0.114 3.886 25 N -0.489 5.489 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.142 0.858 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.396 0.604 35 H 0.394 0.606 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.020 0.980 41 H 0.019 0.981 42 H 0.260 0.740 43 H 0.141 0.859 44 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.134 -23.530 14.528 34.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.246 4.246 3 S 0.162 5.838 4 C -0.129 4.129 5 C -0.157 4.157 6 C -0.052 4.052 7 C 0.056 3.944 8 N -0.406 5.406 9 C 0.401 3.599 10 O -0.469 6.469 11 N -0.394 5.394 12 C 0.012 3.988 13 C -0.159 4.159 14 C -0.014 4.014 15 C -0.560 4.560 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.532 5.532 19 Si 0.721 3.279 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.183 4.183 24 C -0.046 4.046 25 N -0.202 5.202 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.160 0.840 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.230 0.770 35 H 0.227 0.773 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.038 0.962 41 H 0.038 0.962 42 H 0.070 0.930 43 H 0.159 0.841 44 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -20.877 -22.528 15.401 34.359 hybrid contribution 1.226 -0.749 -1.703 2.229 sum -19.651 -23.277 13.697 33.401 Atomic orbital electron populations 1.21581 0.92083 1.03122 1.03198 1.23401 0.99375 0.95190 1.06656 1.85708 0.94077 1.12670 1.91354 1.23033 0.98947 0.91484 0.99444 1.21633 0.92895 0.99358 1.01848 1.20257 0.93554 0.95172 0.96266 1.19975 0.97498 0.93360 0.83548 1.45061 1.53442 1.34211 1.07855 1.15973 0.79481 0.80420 0.84006 1.90934 1.56588 1.55987 1.43410 1.45386 1.53223 1.35486 1.05317 1.21533 0.92746 0.86460 0.98096 1.21894 1.01263 1.01501 0.91196 1.19035 0.94086 0.91583 0.96744 1.21243 1.28881 1.13953 0.91961 0.92605 1.25029 0.95650 0.95922 0.97874 1.69978 1.31143 1.17937 1.34158 0.86529 0.77810 0.77981 0.85614 1.19789 1.21005 1.21005 1.22105 1.01903 0.92490 1.01778 1.22730 0.87985 0.99630 0.94227 1.68042 1.15164 1.22598 1.14381 0.91565 0.90578 0.91618 0.89039 0.89081 0.83982 0.90037 0.90160 0.77045 0.77264 0.91877 0.91898 0.92762 0.92752 0.96208 0.96213 0.92989 0.84075 0.82153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.62 9.92 37.16 0.37 -0.25 16 2 C -0.10 -0.60 5.92 37.16 0.22 -0.38 16 3 S -0.08 -0.62 21.91 -107.50 -2.36 -2.98 16 4 C 0.12 1.08 7.00 -16.92 -0.12 0.96 16 5 C -0.13 -1.10 9.54 -39.21 -0.37 -1.47 16 6 C -0.04 -0.33 5.28 -104.36 -0.55 -0.88 16 7 C 0.18 1.65 5.85 -5.19 -0.03 1.62 16 8 N -0.75 -7.75 5.55 -66.41 -0.37 -8.12 16 9 C 0.70 10.40 8.57 -86.92 -0.74 9.65 16 10 O -0.59 -11.32 16.34 5.28 0.09 -11.23 16 11 N -0.74 -10.55 5.56 -65.22 -0.36 -10.91 16 12 C 0.13 2.38 5.67 -4.04 -0.02 2.36 16 13 C -0.12 -2.34 5.27 -26.73 -0.14 -2.48 16 14 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 15 C -0.52 -14.56 9.11 -34.44 -0.31 -14.88 16 16 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -26.77 13.29 55.43 0.74 -26.04 16 19 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 20 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 C -0.16 -1.08 9.81 -39.41 -0.39 -1.47 16 24 C 0.11 0.81 11.17 -17.57 -0.20 0.61 16 25 N -0.49 -4.39 9.43 -12.11 -0.11 -4.50 16 26 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.09 0.59 8.14 -51.92 -0.42 0.17 16 30 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.14 1.09 8.06 -52.49 -0.42 0.66 16 32 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 33 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16 34 H 0.40 3.21 8.48 -40.82 -0.35 2.86 16 35 H 0.39 4.47 8.49 -40.82 -0.35 4.12 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 43 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 44 H 0.16 0.71 8.06 -52.49 -0.42 0.29 16 LS Contribution 389.43 15.07 5.87 5.87 Total: -1.00 -33.96 389.43 -11.05 -45.01 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -6.99 Total: 1.10 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: -2.53 Total: -4.64 kcal Atomic # 7 Polarization: -49.46 SS G_CDS: -0.11 Total: -49.56 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.09 Total: -11.23 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -0.62 SS G_CDS: -2.36 Total: -2.98 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.96 -11.05 -45.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186557161.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.297 kcal (2) G-P(sol) polarization free energy of solvation -33.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds