Wall clock time and date at job start Tue Mar 31 2020 13:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 S 1.81403 * 109.47022 * 2 1 4 4 C 1.76206 * 102.99957 * 180.02562 * 3 2 1 5 5 C 1.39197 * 119.71167 * 180.25200 * 4 3 2 6 6 C 1.38270 * 119.09364 * 180.25405 * 5 4 3 7 7 C 1.50700 * 120.74295 * 179.78353 * 6 5 4 8 8 N 1.46498 * 109.46769 * 269.71203 * 7 6 5 9 9 C 1.34777 * 119.99828 * 179.72341 * 8 7 6 10 10 O 1.21593 * 119.99949 * 0.28071 * 9 8 7 11 11 N 1.34777 * 120.00128 * 180.27942 * 9 8 7 12 12 C 1.46499 * 120.00065 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.47198 * 179.97438 * 12 11 9 14 14 C 1.52992 * 109.47321 * 179.97438 * 13 12 11 15 15 C 1.50697 * 109.47554 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99751 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00505 * 180.02562 * 15 14 13 18 18 N 1.31510 * 119.99687 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00201 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47135 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47080 * 119.99899 * 19 17 15 22 22 H 1.48497 * 109.47104 * 240.00206 * 19 17 15 23 23 C 1.38908 * 118.51010 * 359.50113 * 6 5 4 24 24 C 1.38027 * 119.34296 * 0.25765 * 23 6 5 25 25 N 1.31964 * 120.86160 * 359.97438 * 24 23 6 26 26 H 1.08993 * 109.47576 * 59.99826 * 1 2 3 27 27 H 1.09003 * 109.46743 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46703 * 299.99728 * 1 2 3 29 29 H 1.09000 * 109.47062 * 240.00316 * 2 1 3 30 30 H 1.08993 * 109.47576 * 120.00174 * 2 1 3 31 31 H 1.08000 * 120.45382 * 0.02562 * 5 4 3 32 32 H 1.09004 * 109.47210 * 149.71561 * 7 6 5 33 33 H 1.08994 * 109.47121 * 29.71530 * 7 6 5 34 34 H 0.97001 * 120.00384 * 0.02562 * 8 7 6 35 35 H 0.97000 * 119.99549 * 359.97438 * 11 9 8 36 36 H 1.09000 * 109.47602 * 299.99940 * 12 11 9 37 37 H 1.09006 * 109.46868 * 59.99976 * 12 11 9 38 38 H 1.09000 * 109.47211 * 300.00689 * 13 12 11 39 39 H 1.09007 * 109.46376 * 60.00147 * 13 12 11 40 40 H 1.09000 * 109.47686 * 300.00577 * 14 13 12 41 41 H 1.08998 * 109.47284 * 60.00513 * 14 13 12 42 42 H 0.97010 * 119.99934 * 180.02562 * 18 17 15 43 43 H 1.07997 * 120.32643 * 180.27812 * 23 6 5 44 44 H 1.07996 * 119.57377 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 6 3.8855 1.5117 -0.0008 5 6 4.7072 2.6352 0.0044 6 6 6.0794 2.4646 -0.0017 7 6 7.0037 3.6549 -0.0013 8 7 7.3031 4.0409 -1.3824 9 6 8.1114 5.0910 -1.6284 10 8 8.5961 5.7148 -0.7040 11 7 8.3824 5.4497 -2.8990 12 6 9.2614 6.5908 -3.1664 13 6 9.4031 6.7822 -4.6778 14 6 10.3206 7.9743 -4.9570 15 6 10.4597 8.1633 -6.4456 16 1 9.9449 7.4997 -7.1246 17 6 11.2443 9.1832 -6.9408 18 7 11.8716 9.9909 -6.1139 19 14 11.4161 9.4179 -8.7860 20 1 10.6156 8.3860 -9.4929 21 1 10.9245 10.7680 -9.1612 22 1 12.8444 9.2865 -9.1707 23 6 6.5867 1.1715 -0.0020 24 6 5.7137 0.1024 -0.0018 25 7 4.4081 0.2946 -0.0008 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 4.2789 3.6267 0.0092 32 1 7.9295 3.3958 0.5124 33 1 6.5236 4.4875 0.5128 34 1 6.9162 3.5435 -2.1198 35 1 7.9960 4.9518 -3.6364 36 1 8.8334 7.4906 -2.7244 37 1 10.2428 6.4033 -2.7306 38 1 9.8313 5.8824 -5.1194 39 1 8.4218 6.9695 -5.1138 40 1 9.8921 8.8740 -4.5154 41 1 11.3019 7.7875 -4.5209 42 1 12.4233 10.7088 -6.4623 43 1 7.6537 1.0044 -0.0021 44 1 6.1041 -0.9045 -0.0026 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186557161.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:09 Heat of formation + Delta-G solvation = -42.911166 kcal Electronic energy + Delta-G solvation = -22909.749376 eV Core-core repulsion = 19372.413885 eV Total energy + Delta-G solvation = -3537.335490 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.42011 -40.77854 -37.22836 -36.31230 -35.18534 -33.89606 -33.54822 -32.65257 -32.34728 -28.92952 -27.45876 -25.30906 -24.87772 -23.86776 -23.23198 -22.29653 -21.89489 -19.57274 -18.60888 -18.25605 -17.75054 -17.35881 -17.01140 -16.81537 -16.48390 -16.23802 -15.89325 -15.72595 -15.47579 -15.33946 -15.09713 -14.89194 -14.26701 -14.08017 -13.72546 -13.70285 -13.45755 -13.30005 -13.17491 -12.76750 -12.53506 -12.41291 -12.38260 -12.32628 -11.71251 -11.65966 -11.39252 -11.36584 -11.17501 -10.94809 -10.76491 -10.70148 -10.54892 -10.43868 -9.81007 -8.62535 -8.18510 -6.29770 -0.11264 0.01532 0.41882 1.25941 1.42456 1.42624 1.55678 1.72956 2.11975 2.42686 2.62227 3.15440 3.29832 3.38068 3.58007 3.90094 4.00506 4.01306 4.04439 4.14200 4.18360 4.25454 4.50390 4.53098 4.57827 4.58407 4.69345 4.78277 4.88789 4.89332 4.97913 5.00740 5.18596 5.20801 5.22596 5.34498 5.47479 5.52987 5.55598 5.73025 5.85870 5.95321 6.24056 6.66436 6.87752 7.06168 7.39803 7.54351 8.93722 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.020506 B = 0.001661 C = 0.001594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.144243 B =16857.358198 C =17562.589730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.089 4.089 3 S -0.100 6.100 4 C 0.104 3.896 5 C -0.138 4.138 6 C -0.042 4.042 7 C 0.183 3.817 8 N -0.728 5.728 9 C 0.701 3.299 10 O -0.637 6.637 11 N -0.729 5.729 12 C 0.150 3.850 13 C -0.101 4.101 14 C 0.022 3.978 15 C -0.540 4.540 16 H 0.066 0.934 17 C -0.003 4.003 18 N -0.934 5.934 19 Si 0.967 3.033 20 H -0.259 1.259 21 H -0.281 1.281 22 H -0.280 1.280 23 C -0.152 4.152 24 C 0.110 3.890 25 N -0.503 5.503 26 H 0.065 0.935 27 H 0.092 0.908 28 H 0.066 0.934 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.144 0.856 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.411 0.589 35 H 0.412 0.588 36 H 0.047 0.953 37 H 0.048 0.952 38 H 0.068 0.932 39 H 0.067 0.933 40 H -0.007 1.007 41 H -0.007 1.007 42 H 0.263 0.737 43 H 0.162 0.838 44 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.057 -25.709 13.387 35.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.237 4.237 3 S 0.140 5.860 4 C -0.144 4.144 5 C -0.164 4.164 6 C -0.052 4.052 7 C 0.059 3.941 8 N -0.385 5.385 9 C 0.400 3.600 10 O -0.518 6.518 11 N -0.385 5.385 12 C 0.025 3.975 13 C -0.139 4.139 14 C -0.015 4.015 15 C -0.578 4.578 16 H 0.085 0.915 17 C -0.201 4.201 18 N -0.575 5.575 19 Si 0.792 3.208 20 H -0.182 1.182 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.175 4.175 24 C -0.049 4.049 25 N -0.216 5.216 26 H 0.084 0.916 27 H 0.111 0.889 28 H 0.085 0.915 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.161 0.839 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.247 0.753 35 H 0.248 0.752 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.011 0.989 41 H 0.012 0.988 42 H 0.072 0.928 43 H 0.180 0.820 44 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -21.855 -24.768 14.238 35.970 hybrid contribution 1.501 -0.131 -1.283 1.979 sum -20.354 -24.899 12.955 34.671 Atomic orbital electron populations 1.21597 0.90688 1.04164 1.03215 1.23424 1.00406 0.93585 1.06296 1.85732 0.94192 1.14644 1.91405 1.23147 0.99314 0.91756 1.00155 1.21703 0.93219 0.99419 1.02084 1.20097 0.92983 0.95106 0.97010 1.19985 0.97794 0.93725 0.82559 1.44867 1.51851 1.32682 1.09079 1.16082 0.79645 0.80900 0.83344 1.90910 1.58465 1.57724 1.44733 1.45027 1.52732 1.34706 1.06028 1.21086 0.92651 0.87169 0.96588 1.21591 1.00462 0.99360 0.92464 1.18954 0.93935 0.93048 0.95610 1.21717 1.28766 1.14108 0.93245 0.91549 1.26012 0.95285 0.95636 1.03152 1.70120 1.32052 1.18692 1.36604 0.85369 0.77968 0.78198 0.79305 1.18249 1.20639 1.20585 1.22333 1.02974 0.91784 1.00430 1.23228 0.87391 1.01032 0.93269 1.68061 1.16217 1.22603 1.14763 0.91602 0.88938 0.91539 0.89378 0.89331 0.83865 0.89897 0.90872 0.75333 0.75191 0.93459 0.93332 0.91326 0.91439 0.98894 0.98823 0.92849 0.82038 0.79461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.92 71.98 0.71 -0.33 16 2 C -0.09 -1.02 5.92 71.98 0.43 -0.60 16 3 S -0.10 -1.56 21.91 -56.49 -1.24 -2.80 16 4 C 0.10 1.81 7.00 84.83 0.59 2.41 16 5 C -0.14 -2.20 9.54 22.51 0.21 -1.99 16 6 C -0.04 -0.59 5.28 -19.70 -0.10 -0.70 16 7 C 0.18 3.13 5.85 85.63 0.50 3.64 16 8 N -0.73 -13.87 5.55 -482.30 -2.68 -16.54 16 9 C 0.70 20.08 8.57 179.05 1.53 21.62 16 10 O -0.64 -24.43 16.34 -4.01 -0.07 -24.50 16 11 N -0.73 -19.79 5.56 -478.52 -2.66 -22.45 16 12 C 0.15 5.27 5.67 86.38 0.49 5.76 16 13 C -0.10 -3.84 5.27 30.59 0.16 -3.68 16 14 C 0.02 1.15 4.97 29.84 0.15 1.30 16 15 C -0.54 -30.07 9.11 25.60 0.23 -29.84 16 16 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 17 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 18 N -0.93 -56.99 13.29 21.45 0.28 -56.71 16 19 Si 0.97 43.73 29.54 68.60 2.03 45.75 16 20 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 21 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 22 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 23 C -0.15 -1.71 9.81 22.38 0.22 -1.49 16 24 C 0.11 1.32 11.17 84.62 0.95 2.26 16 25 N -0.50 -8.35 9.43 -192.21 -1.81 -10.16 16 26 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.07 0.50 8.14 -2.38 -0.02 0.48 16 29 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 32 H 0.08 1.45 8.10 -2.38 -0.02 1.43 16 33 H 0.07 1.39 8.10 -2.39 -0.02 1.38 16 34 H 0.41 5.65 8.48 -92.71 -0.79 4.87 16 35 H 0.41 8.30 8.49 -92.71 -0.79 7.51 16 36 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 38 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 39 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 40 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 41 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 42 H 0.26 15.04 8.31 -92.70 -0.77 14.27 16 43 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16 44 H 0.19 1.09 8.06 -2.91 -0.02 1.06 16 Total: -1.00 -74.04 389.43 -0.17 -74.21 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -0.57 Total: 14.55 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: 6.54 Total: -1.35 kcal Atomic # 7 Polarization: -99.00 SS G_CDS: -6.87 Total: -105.87 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: -0.07 Total: -24.50 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -1.24 Total: -2.80 kcal Total: -74.04 -0.17 -74.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186557161.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.303 kcal (2) G-P(sol) polarization free energy of solvation -74.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds