Wall clock time and date at job start Tue Mar 31 2020 14:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34220 * 116.99904 * 2 1 4 4 O 1.20823 * 120.00372 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00187 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.47069 * 59.99372 * 5 3 2 7 7 N 1.46895 * 109.47316 * 179.97438 * 5 3 2 8 8 C 1.46897 * 111.00176 * 274.99786 * 7 5 3 9 9 C 1.53002 * 109.47602 * 180.02562 * 8 7 5 10 10 C 1.52995 * 109.47568 * 180.02562 * 9 8 7 11 11 C 1.50694 * 109.47371 * 179.97438 * 10 9 8 12 12 H 1.08001 * 119.99983 * 359.97438 * 11 10 9 13 13 C 1.37876 * 120.00403 * 180.02562 * 11 10 9 14 14 N 1.31522 * 119.99512 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 120.00490 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47034 * 89.99526 * 15 13 11 17 17 H 1.48499 * 109.47334 * 209.99687 * 15 13 11 18 18 H 1.48506 * 109.47069 * 329.99986 * 15 13 11 19 19 C 1.50709 * 109.47008 * 299.99893 * 5 3 2 20 20 C 1.38250 * 119.92135 * 279.99938 * 19 5 3 21 21 C 1.38245 * 120.14567 * 179.97438 * 20 19 5 22 22 C 1.38570 * 119.99723 * 0.02562 * 21 20 19 23 23 O 1.35992 * 120.07283 * 179.97438 * 22 21 20 24 24 C 1.42904 * 116.99956 * 0.02562 * 23 22 21 25 25 C 1.39152 * 119.85311 * 0.02562 * 22 21 20 26 26 O 1.35990 * 120.07342 * 179.97438 * 25 22 21 27 27 C 1.38233 * 119.92876 * 100.01609 * 19 5 3 28 28 H 1.08997 * 109.47117 * 300.00114 * 1 2 3 29 29 H 1.09002 * 109.46872 * 60.00363 * 1 2 3 30 30 H 1.09003 * 109.46896 * 179.97438 * 1 2 3 31 31 H 1.00899 * 111.00432 * 38.95353 * 7 5 3 32 32 H 1.09009 * 109.46979 * 300.00096 * 8 7 5 33 33 H 1.08997 * 109.47220 * 60.00054 * 8 7 5 34 34 H 1.09000 * 109.46320 * 300.00305 * 9 8 7 35 35 H 1.08997 * 109.47080 * 59.99612 * 9 8 7 36 36 H 1.09004 * 109.46822 * 300.00148 * 10 9 8 37 37 H 1.09005 * 109.46979 * 59.99633 * 10 9 8 38 38 H 0.96999 * 119.99478 * 180.02562 * 14 13 11 39 39 H 1.08004 * 119.93022 * 359.97438 * 20 19 5 40 40 H 1.07995 * 120.00146 * 179.74376 * 21 20 19 41 41 H 1.09001 * 109.46790 * 299.99120 * 24 23 22 42 42 H 1.08998 * 109.47193 * 59.99618 * 24 23 22 43 43 H 1.09004 * 109.46727 * 180.02562 * 24 23 22 44 44 H 0.96704 * 114.00758 * 269.95878 * 26 25 22 45 45 H 1.08000 * 120.00165 * 0.02724 * 27 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9564 0.7805 -0.8891 7 7 3.9828 2.6835 -0.0002 8 6 4.0180 3.2214 -1.3667 9 6 4.4557 4.6869 -1.3269 10 6 4.4918 5.2473 -2.7501 11 6 4.9222 6.6909 -2.7108 12 1 5.1471 7.1618 -1.7653 13 6 5.0280 7.4110 -3.8819 14 7 4.7536 6.8376 -5.0333 15 14 5.5608 9.2006 -3.8332 16 1 7.0397 9.2799 -3.9422 17 1 4.9409 9.9327 -4.9667 18 1 5.1255 9.8120 -2.5517 19 6 4.1047 0.5920 1.2315 20 6 4.1031 1.2553 2.4445 21 6 4.5954 0.6331 3.5766 22 6 5.0922 -0.6580 3.4970 23 8 5.5773 -1.2714 4.6096 24 6 5.5436 -0.5258 5.8283 25 6 5.0947 -1.3252 2.2759 26 8 5.5817 -2.5922 2.1925 27 6 4.5992 -0.6960 1.1451 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.3826 3.2384 0.5914 32 1 4.7258 2.6474 -1.9649 33 1 3.0252 3.1503 -1.8109 34 1 3.7483 5.2611 -0.7285 35 1 5.4486 4.7577 -0.8828 36 1 5.1989 4.6731 -3.3488 37 1 3.4986 5.1766 -3.1937 38 1 4.8283 7.3441 -5.8572 39 1 3.7166 2.2618 2.5078 40 1 4.5969 1.1549 4.5221 41 1 6.1339 0.3835 5.7143 42 1 4.5127 -0.2626 6.0648 43 1 5.9592 -1.1295 6.6351 44 1 6.5271 -2.6380 1.9942 45 1 4.5999 -1.2117 0.1961 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186726913.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:15 Heat of formation + Delta-G solvation = -144.414869 kcal Electronic energy + Delta-G solvation = -26994.761150 eV Core-core repulsion = 22977.978506 eV Total energy + Delta-G solvation = -4016.782643 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.04612 -40.38776 -38.22752 -37.50189 -36.66397 -35.65375 -33.62026 -31.96707 -30.57816 -29.85572 -28.51448 -27.66068 -26.51080 -25.05936 -23.03432 -22.44436 -22.14384 -20.74232 -20.11471 -18.80302 -18.04152 -17.66720 -17.09106 -16.80259 -16.50734 -16.23383 -16.07844 -15.45290 -14.94233 -14.74004 -14.48365 -14.45195 -14.24905 -14.01585 -13.61581 -13.34758 -13.13199 -12.67201 -12.40117 -12.27453 -12.22038 -11.96675 -11.73404 -11.60414 -11.46199 -11.35899 -10.93656 -10.87315 -10.84652 -10.66643 -10.59306 -10.49958 -9.71059 -9.35913 -9.07920 -9.04726 -8.55711 -8.32184 -8.28908 -5.97588 -3.99467 1.00997 1.03185 2.04293 2.58394 2.93676 3.32499 3.33873 3.39813 3.43609 3.94204 4.18605 4.47493 4.49535 4.52655 4.70263 4.74685 4.82645 4.94855 4.95340 4.97233 5.04033 5.12781 5.16500 5.34523 5.35766 5.38354 5.62971 5.70558 5.80726 5.89664 6.01444 6.19741 6.25081 6.29513 6.39783 6.61443 6.70707 6.92306 7.08138 7.14072 7.36103 7.51823 7.59077 7.70305 7.85093 8.02782 8.45778 9.07558 9.64324 11.13959 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.013718 B = 0.002579 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.580406 B =10853.162255 C =11985.045084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.355 6.355 3 C 0.436 3.564 4 O -0.500 6.500 5 C 0.141 3.859 6 H 0.125 0.875 7 N -0.653 5.653 8 C 0.053 3.947 9 C -0.105 4.105 10 C 0.023 3.977 11 C -0.518 4.518 12 H 0.055 0.945 13 C 0.055 3.945 14 N -0.897 5.897 15 Si 0.892 3.108 16 H -0.280 1.280 17 H -0.287 1.287 18 H -0.274 1.274 19 C -0.090 4.090 20 C -0.058 4.058 21 C -0.195 4.195 22 C 0.105 3.895 23 O -0.309 6.309 24 C 0.025 3.975 25 C 0.072 3.928 26 O -0.486 6.486 27 C -0.084 4.084 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.100 0.900 31 H 0.351 0.649 32 H 0.072 0.928 33 H 0.034 0.966 34 H 0.047 0.953 35 H 0.057 0.943 36 H 0.016 0.984 37 H 0.014 0.986 38 H 0.260 0.740 39 H 0.130 0.870 40 H 0.134 0.866 41 H 0.057 0.943 42 H 0.055 0.945 43 H 0.100 0.900 44 H 0.386 0.614 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.071 -19.897 18.546 27.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.270 6.270 3 C 0.276 3.724 4 O -0.387 6.387 5 C 0.028 3.972 6 H 0.143 0.857 7 N -0.285 5.285 8 C -0.075 4.075 9 C -0.143 4.143 10 C -0.015 4.015 11 C -0.556 4.556 12 H 0.074 0.926 13 C -0.146 4.146 14 N -0.536 5.536 15 Si 0.720 3.280 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.199 1.199 19 C -0.091 4.091 20 C -0.077 4.077 21 C -0.214 4.214 22 C 0.059 3.941 23 O -0.223 6.223 24 C -0.070 4.070 25 C 0.027 3.973 26 O -0.295 6.295 27 C -0.102 4.102 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.118 0.882 31 H 0.172 0.828 32 H 0.090 0.910 33 H 0.052 0.948 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.035 0.965 37 H 0.033 0.967 38 H 0.069 0.931 39 H 0.148 0.852 40 H 0.151 0.849 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.118 0.882 44 H 0.241 0.759 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.152 -20.046 18.518 27.375 hybrid contribution -0.516 1.573 -0.266 1.677 sum -2.668 -18.473 18.252 26.106 Atomic orbital electron populations 1.23271 0.76705 1.03576 1.02542 1.86557 1.23209 1.33500 1.83711 1.25227 0.93366 0.81704 0.72102 1.90705 1.66699 1.36317 1.44985 1.20284 0.84653 0.93550 0.98737 0.85746 1.61057 1.54416 0.99343 1.13720 1.22321 0.99930 0.98378 0.86916 1.21600 1.00356 0.91096 1.01229 1.19058 0.97123 0.95498 0.89820 1.21244 1.45228 0.96382 0.92762 0.92650 1.25031 0.95573 0.98356 0.95600 1.69972 1.49384 1.36648 0.97620 0.86589 0.78720 0.85079 0.77586 1.20661 1.21276 1.19887 1.19060 1.02574 0.93817 0.93636 1.20796 0.96439 0.99462 0.90953 1.21122 1.05602 0.94461 1.00235 1.19488 0.95925 0.91560 0.87117 1.86137 1.78259 1.42288 1.15570 1.23098 1.01911 0.97406 0.84626 1.17563 1.04248 0.85691 0.89795 1.84894 1.29085 1.22237 1.93314 1.21060 0.97725 0.93472 0.97985 0.92025 0.91836 0.88178 0.82763 0.90955 0.94798 0.93399 0.92385 0.96528 0.96744 0.93053 0.85195 0.84873 0.92465 0.92596 0.88203 0.75902 0.84235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 101.05 1.07 1.38 16 2 O -0.35 -4.31 10.48 -39.23 -0.41 -4.72 16 3 C 0.44 5.95 7.06 36.01 0.25 6.21 16 4 O -0.50 -8.19 15.05 -18.75 -0.28 -8.48 16 5 C 0.14 1.75 2.70 -70.01 -0.19 1.56 16 6 H 0.12 1.39 7.66 -51.93 -0.40 1.00 16 7 N -0.65 -9.44 5.55 -109.18 -0.61 -10.04 16 8 C 0.05 0.91 5.38 -3.82 -0.02 0.89 16 9 C -0.10 -2.18 5.41 -26.73 -0.14 -2.33 16 10 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 11 C -0.52 -14.89 9.11 -34.44 -0.31 -15.21 16 12 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 14 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16 15 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 18 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 19 C -0.09 -1.02 4.88 -104.61 -0.51 -1.53 16 20 C -0.06 -0.64 9.31 -39.57 -0.37 -1.01 16 21 C -0.20 -1.95 9.04 -39.46 -0.36 -2.30 16 22 C 0.11 1.14 6.70 -39.12 -0.26 0.88 16 23 O -0.31 -3.15 10.28 -34.22 -0.35 -3.50 16 24 C 0.02 0.15 9.81 101.05 0.99 1.14 16 25 C 0.07 0.79 6.72 -39.12 -0.26 0.53 16 26 O -0.49 -4.87 13.29 -34.21 -0.45 -5.32 16 27 C -0.08 -0.88 9.60 -39.46 -0.38 -1.26 16 28 H 0.06 0.58 8.13 -51.93 -0.42 0.15 16 29 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 30 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.35 5.15 7.09 -39.29 -0.28 4.88 16 32 H 0.07 1.20 8.06 -51.92 -0.42 0.78 16 33 H 0.03 0.62 7.62 -51.93 -0.40 0.23 16 34 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.13 1.37 7.24 -52.48 -0.38 0.99 16 40 H 0.13 1.03 6.30 -52.49 -0.33 0.69 16 41 H 0.06 0.31 7.66 -51.93 -0.40 -0.09 16 42 H 0.06 0.30 7.67 -51.93 -0.40 -0.09 16 43 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.39 2.14 9.07 45.56 0.41 2.55 16 45 H 0.14 1.23 8.03 -52.49 -0.42 0.81 16 LS Contribution 383.07 15.07 5.77 5.77 Total: -1.00 -34.95 383.07 -7.28 -42.23 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -5.93 Total: 2.79 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: -0.73 Total: -9.09 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: 0.13 Total: -36.60 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -1.50 Total: -22.02 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.95 -7.28 -42.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186726913.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.184 kcal (2) G-P(sol) polarization free energy of solvation -34.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds