Wall clock time and date at job start Tue Mar 31 2020 14:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34220 * 116.99904 * 2 1 4 4 O 1.20823 * 120.00372 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00187 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.47069 * 59.99372 * 5 3 2 7 7 N 1.46895 * 109.47316 * 179.97438 * 5 3 2 8 8 C 1.46897 * 111.00176 * 274.99786 * 7 5 3 9 9 C 1.53002 * 109.47602 * 180.02562 * 8 7 5 10 10 C 1.52995 * 109.47568 * 180.02562 * 9 8 7 11 11 C 1.50694 * 109.47371 * 179.97438 * 10 9 8 12 12 H 1.08001 * 119.99983 * 359.97438 * 11 10 9 13 13 C 1.37876 * 120.00403 * 180.02562 * 11 10 9 14 14 N 1.31522 * 119.99512 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 120.00490 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47034 * 89.99526 * 15 13 11 17 17 H 1.48499 * 109.47334 * 209.99687 * 15 13 11 18 18 H 1.48506 * 109.47069 * 329.99986 * 15 13 11 19 19 C 1.50709 * 109.47008 * 299.99893 * 5 3 2 20 20 C 1.38250 * 119.92135 * 279.99938 * 19 5 3 21 21 C 1.38245 * 120.14567 * 179.97438 * 20 19 5 22 22 C 1.38570 * 119.99723 * 0.02562 * 21 20 19 23 23 O 1.35992 * 120.07283 * 179.97438 * 22 21 20 24 24 C 1.42904 * 116.99956 * 0.02562 * 23 22 21 25 25 C 1.39152 * 119.85311 * 0.02562 * 22 21 20 26 26 O 1.35990 * 120.07342 * 179.97438 * 25 22 21 27 27 C 1.38233 * 119.92876 * 100.01609 * 19 5 3 28 28 H 1.08997 * 109.47117 * 300.00114 * 1 2 3 29 29 H 1.09002 * 109.46872 * 60.00363 * 1 2 3 30 30 H 1.09003 * 109.46896 * 179.97438 * 1 2 3 31 31 H 1.00899 * 111.00432 * 38.95353 * 7 5 3 32 32 H 1.09009 * 109.46979 * 300.00096 * 8 7 5 33 33 H 1.08997 * 109.47220 * 60.00054 * 8 7 5 34 34 H 1.09000 * 109.46320 * 300.00305 * 9 8 7 35 35 H 1.08997 * 109.47080 * 59.99612 * 9 8 7 36 36 H 1.09004 * 109.46822 * 300.00148 * 10 9 8 37 37 H 1.09005 * 109.46979 * 59.99633 * 10 9 8 38 38 H 0.96999 * 119.99478 * 180.02562 * 14 13 11 39 39 H 1.08004 * 119.93022 * 359.97438 * 20 19 5 40 40 H 1.07995 * 120.00146 * 179.74376 * 21 20 19 41 41 H 1.09001 * 109.46790 * 299.99120 * 24 23 22 42 42 H 1.08998 * 109.47193 * 59.99618 * 24 23 22 43 43 H 1.09004 * 109.46727 * 180.02562 * 24 23 22 44 44 H 0.96704 * 114.00758 * 269.95878 * 26 25 22 45 45 H 1.08000 * 120.00165 * 0.02724 * 27 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9564 0.7805 -0.8891 7 7 3.9828 2.6835 -0.0002 8 6 4.0180 3.2214 -1.3667 9 6 4.4557 4.6869 -1.3269 10 6 4.4918 5.2473 -2.7501 11 6 4.9222 6.6909 -2.7108 12 1 5.1471 7.1618 -1.7653 13 6 5.0280 7.4110 -3.8819 14 7 4.7536 6.8376 -5.0333 15 14 5.5608 9.2006 -3.8332 16 1 7.0397 9.2799 -3.9422 17 1 4.9409 9.9327 -4.9667 18 1 5.1255 9.8120 -2.5517 19 6 4.1047 0.5920 1.2315 20 6 4.1031 1.2553 2.4445 21 6 4.5954 0.6331 3.5766 22 6 5.0922 -0.6580 3.4970 23 8 5.5773 -1.2714 4.6096 24 6 5.5436 -0.5258 5.8283 25 6 5.0947 -1.3252 2.2759 26 8 5.5817 -2.5922 2.1925 27 6 4.5992 -0.6960 1.1451 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.3826 3.2384 0.5914 32 1 4.7258 2.6474 -1.9649 33 1 3.0252 3.1503 -1.8109 34 1 3.7483 5.2611 -0.7285 35 1 5.4486 4.7577 -0.8828 36 1 5.1989 4.6731 -3.3488 37 1 3.4986 5.1766 -3.1937 38 1 4.8283 7.3441 -5.8572 39 1 3.7166 2.2618 2.5078 40 1 4.5969 1.1549 4.5221 41 1 6.1339 0.3835 5.7143 42 1 4.5127 -0.2626 6.0648 43 1 5.9592 -1.1295 6.6351 44 1 6.5271 -2.6380 1.9942 45 1 4.5999 -1.2117 0.1961 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186726913.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:14 Heat of formation + Delta-G solvation = -168.621944 kcal Electronic energy + Delta-G solvation = -26995.810847 eV Core-core repulsion = 22977.978506 eV Total energy + Delta-G solvation = -4017.832341 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.01454 -41.21505 -39.02549 -38.42097 -37.60025 -36.95705 -35.42000 -33.58719 -31.66384 -30.85671 -29.40637 -28.50908 -27.78693 -26.36679 -24.36224 -23.53904 -23.11381 -22.07827 -21.49521 -19.58330 -19.00988 -18.55313 -18.40248 -18.13660 -17.64791 -17.35475 -16.79869 -16.55149 -16.41661 -15.93394 -15.65728 -15.54090 -15.10305 -14.90776 -14.77449 -14.46490 -14.30243 -13.96461 -13.66511 -13.42489 -13.38837 -13.01963 -12.99027 -12.79093 -12.72938 -12.47924 -12.35662 -12.22877 -12.11737 -11.87624 -11.74751 -11.60496 -11.50519 -11.39262 -11.12328 -10.54798 -9.87270 -9.76123 -9.08337 -8.19854 -6.30621 0.20807 0.24294 0.98924 1.40185 1.41852 1.52929 1.65244 2.31050 2.40905 2.50794 3.01940 3.13401 3.25690 3.57102 3.76060 3.79931 4.00739 4.11626 4.23697 4.24421 4.27006 4.32201 4.33509 4.40567 4.43177 4.61493 4.64188 4.69075 4.74726 4.88239 4.93586 5.01391 5.09411 5.20191 5.23125 5.24554 5.42972 5.52217 5.63785 5.73547 5.76760 5.86251 6.11552 6.26176 6.27845 6.55574 6.86127 6.90663 7.38446 8.92216 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.013718 B = 0.002579 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.580406 B =10853.162255 C =11985.045084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.355 6.355 3 C 0.439 3.561 4 O -0.534 6.534 5 C 0.144 3.856 6 H 0.139 0.861 7 N -0.647 5.647 8 C 0.067 3.933 9 C -0.090 4.090 10 C 0.026 3.974 11 C -0.542 4.542 12 H 0.060 0.940 13 C -0.002 4.002 14 N -0.934 5.934 15 Si 0.966 3.034 16 H -0.270 1.270 17 H -0.282 1.282 18 H -0.264 1.264 19 C -0.098 4.098 20 C -0.069 4.069 21 C -0.193 4.193 22 C 0.097 3.903 23 O -0.326 6.326 24 C 0.015 3.985 25 C 0.064 3.936 26 O -0.497 6.497 27 C -0.084 4.084 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.133 0.867 31 H 0.351 0.649 32 H 0.080 0.920 33 H 0.019 0.981 34 H 0.045 0.955 35 H 0.061 0.939 36 H -0.003 1.003 37 H -0.014 1.014 38 H 0.263 0.737 39 H 0.130 0.870 40 H 0.154 0.846 41 H 0.066 0.934 42 H 0.063 0.937 43 H 0.119 0.881 44 H 0.404 0.596 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.470 -20.262 20.063 28.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.269 6.269 3 C 0.281 3.719 4 O -0.423 6.423 5 C 0.031 3.969 6 H 0.156 0.844 7 N -0.279 5.279 8 C -0.062 4.062 9 C -0.128 4.128 10 C -0.012 4.012 11 C -0.580 4.580 12 H 0.078 0.922 13 C -0.200 4.200 14 N -0.575 5.575 15 Si 0.790 3.210 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.188 1.188 19 C -0.099 4.099 20 C -0.087 4.087 21 C -0.212 4.212 22 C 0.051 3.949 23 O -0.239 6.239 24 C -0.079 4.079 25 C 0.019 3.981 26 O -0.309 6.309 27 C -0.103 4.103 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.151 0.849 31 H 0.171 0.829 32 H 0.099 0.901 33 H 0.037 0.963 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.015 0.985 37 H 0.005 0.995 38 H 0.072 0.928 39 H 0.148 0.852 40 H 0.172 0.828 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.137 0.863 44 H 0.262 0.738 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -1.536 -20.443 20.059 28.682 hybrid contribution -0.725 1.568 -0.676 1.854 sum -2.261 -18.875 19.383 27.150 Atomic orbital electron populations 1.23554 0.75162 1.05715 1.02308 1.86543 1.24728 1.32522 1.83154 1.25385 0.93770 0.81626 0.71139 1.90692 1.67487 1.37390 1.46734 1.20314 0.84156 0.92242 1.00170 0.84367 1.60967 1.54750 1.00481 1.11662 1.22012 0.99127 0.96349 0.88690 1.21334 1.00651 0.93248 0.97576 1.18955 0.94708 0.94895 0.92601 1.21694 1.45408 0.97739 0.93173 0.92190 1.25999 0.95429 1.03424 0.95124 1.70103 1.50276 1.38681 0.98391 0.85435 0.78638 0.78938 0.77972 1.19556 1.20785 1.18824 1.18965 1.03535 0.94289 0.93148 1.20906 0.96867 0.99659 0.91293 1.21306 1.04821 0.94295 1.00775 1.19661 0.95872 0.91836 0.87508 1.86118 1.78125 1.43317 1.16373 1.23381 1.02839 0.98039 0.83619 1.17706 1.04407 0.85946 0.90063 1.84836 1.30791 1.21888 1.93373 1.21171 0.97269 0.93163 0.98656 0.92044 0.92357 0.84874 0.82863 0.90141 0.96255 0.93620 0.91979 0.98481 0.99537 0.92782 0.85191 0.82828 0.91563 0.91810 0.86276 0.73806 0.82836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.56 113.37 1.20 1.66 16 2 O -0.35 -8.27 10.48 -51.32 -0.54 -8.81 16 3 C 0.44 11.81 7.06 71.24 0.50 12.32 16 4 O -0.53 -17.61 15.05 21.97 0.33 -17.28 16 5 C 0.14 3.46 2.70 43.43 0.12 3.58 16 6 H 0.14 2.93 7.66 -2.38 -0.02 2.91 16 7 N -0.65 -18.38 5.55 -499.34 -2.77 -21.15 16 8 C 0.07 2.32 5.38 86.30 0.46 2.78 16 9 C -0.09 -3.79 5.41 30.59 0.17 -3.62 16 10 C 0.03 1.40 4.97 29.84 0.15 1.55 16 11 C -0.54 -31.53 9.11 25.60 0.23 -31.30 16 12 H 0.06 3.35 7.74 -2.91 -0.02 3.32 16 13 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 14 N -0.93 -57.74 13.29 21.45 0.28 -57.46 16 15 Si 0.97 44.93 29.54 68.60 2.03 46.95 16 16 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 17 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 18 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 19 C -0.10 -2.13 4.88 -19.86 -0.10 -2.23 16 20 C -0.07 -1.44 9.31 22.27 0.21 -1.23 16 21 C -0.19 -3.56 9.04 22.35 0.20 -3.36 16 22 C 0.10 1.97 6.70 22.57 0.15 2.12 16 23 O -0.33 -6.11 10.28 -79.60 -0.82 -6.93 16 24 C 0.02 0.16 9.81 113.37 1.11 1.27 16 25 C 0.06 1.31 6.72 22.57 0.15 1.46 16 26 O -0.50 -9.23 13.29 -79.57 -1.06 -10.29 16 27 C -0.08 -1.65 9.60 22.35 0.21 -1.43 16 28 H 0.06 1.10 8.13 -2.39 -0.02 1.08 16 29 H 0.06 1.11 8.13 -2.39 -0.02 1.09 16 30 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.35 10.21 7.09 -89.69 -0.64 9.58 16 32 H 0.08 2.65 8.06 -2.38 -0.02 2.63 16 33 H 0.02 0.72 7.62 -2.39 -0.02 0.70 16 34 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.00 -0.18 8.14 -2.38 -0.02 -0.20 16 37 H -0.01 -0.81 8.14 -2.38 -0.02 -0.83 16 38 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 39 H 0.13 2.65 7.24 -2.91 -0.02 2.63 16 40 H 0.15 2.05 6.30 -2.91 -0.02 2.04 16 41 H 0.07 0.57 7.66 -2.39 -0.02 0.55 16 42 H 0.06 0.56 7.67 -2.39 -0.02 0.54 16 43 H 0.12 0.74 8.14 -2.38 -0.02 0.72 16 44 H 0.40 3.89 9.07 -74.05 -0.67 3.21 16 45 H 0.15 2.46 8.03 -2.91 -0.02 2.43 16 Total: -1.00 -75.23 383.07 2.40 -72.84 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: -0.29 Total: 18.21 kcal Atomic # 6 Polarization: -21.32 SS G_CDS: 5.23 Total: -16.09 kcal Atomic # 7 Polarization: -76.12 SS G_CDS: -2.49 Total: -78.61 kcal Atomic # 8 Polarization: -41.22 SS G_CDS: -2.08 Total: -43.30 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Total: -75.23 2.40 -72.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186726913.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.785 kcal (2) G-P(sol) polarization free energy of solvation -75.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds