Wall clock time and date at job start Tue Mar 31 2020 13:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99803 * 2 1 4 4 C 1.52999 * 109.47299 * 180.02562 * 3 2 1 5 5 O 1.42902 * 109.46930 * 64.99677 * 4 3 2 6 6 C 1.35663 * 116.99412 * 179.97438 * 5 4 3 7 7 C 1.38437 * 120.12204 * 0.02562 * 6 5 4 8 8 C 1.38682 * 120.03173 * 179.97438 * 7 6 5 9 9 O 1.35719 * 119.86596 * 180.02562 * 8 7 6 10 10 C 1.42894 * 117.00048 * 180.02562 * 9 8 7 11 11 C 1.39187 * 120.27265 * 0.02562 * 8 7 6 12 12 C 1.37536 * 120.24457 * 359.97438 * 11 8 7 13 13 C 1.39858 * 119.96023 * 359.97438 * 12 11 8 14 14 C 1.47308 * 120.13500 * 180.27522 * 13 12 11 15 15 O 1.21622 * 119.99893 * 130.74268 * 14 13 12 16 16 N 1.34778 * 119.99592 * 310.74430 * 14 13 12 17 17 C 1.46491 * 120.00393 * 4.40291 * 16 14 13 18 18 C 1.46506 * 119.99329 * 184.41107 * 16 14 13 19 19 C 1.50700 * 109.47222 * 90.00031 * 18 16 14 20 20 H 1.07992 * 120.00055 * 359.97438 * 19 18 16 21 21 C 1.37874 * 119.99587 * 179.97438 * 19 18 16 22 22 N 1.31521 * 119.99932 * 179.97438 * 21 19 18 23 23 Si 1.86806 * 120.00323 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.47152 * 89.99983 * 23 21 19 25 25 H 1.48500 * 109.46848 * 209.99968 * 23 21 19 26 26 H 1.48498 * 109.46788 * 329.99734 * 23 21 19 27 27 H 1.09000 * 109.47219 * 299.99548 * 1 2 3 28 28 H 1.08997 * 109.47252 * 60.00751 * 1 2 3 29 29 H 1.09004 * 109.46822 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47122 * 59.99872 * 3 2 1 31 31 H 1.09004 * 109.46774 * 299.99800 * 3 2 1 32 32 H 1.09003 * 109.46766 * 305.00183 * 4 3 2 33 33 H 1.09002 * 109.47193 * 184.99721 * 4 3 2 34 34 H 1.08001 * 119.98751 * 359.95720 * 7 6 5 35 35 H 1.09004 * 109.47249 * 179.97438 * 10 9 8 36 36 H 1.09002 * 109.47289 * 299.99944 * 10 9 8 37 37 H 1.09005 * 109.47444 * 59.99867 * 10 9 8 38 38 H 1.08011 * 119.87922 * 180.02562 * 11 8 7 39 39 H 1.08000 * 120.02421 * 180.02562 * 12 11 8 40 40 H 1.09006 * 109.46557 * 93.02865 * 17 16 14 41 41 H 1.08999 * 109.47509 * 213.02301 * 17 16 14 42 42 H 1.08999 * 109.47542 * 333.03656 * 17 16 14 43 43 H 1.09005 * 109.46346 * 210.00179 * 18 16 14 44 44 H 1.09004 * 109.47192 * 329.99264 * 18 16 14 45 45 H 0.97001 * 119.99997 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 8 3.9648 0.5797 -1.2220 6 6 5.2996 0.3993 -1.3838 7 6 6.1795 0.7942 -0.3907 8 6 7.5436 0.6084 -0.5578 9 8 8.4031 0.9964 0.4182 10 6 9.7951 0.7766 0.1818 11 6 8.0348 0.0256 -1.7225 12 6 7.1708 -0.3710 -2.7164 13 6 5.7932 -0.1893 -2.5578 14 6 4.8639 -0.6181 -3.6173 15 8 3.8933 -1.2954 -3.3373 16 7 5.0894 -0.2599 -4.8969 17 6 6.3080 0.4731 -5.2486 18 6 4.1155 -0.6036 -5.9361 19 6 3.1070 0.5085 -6.0670 20 1 3.1835 1.3835 -5.4387 21 6 2.0867 0.4088 -6.9889 22 7 1.2062 1.3791 -7.1028 23 14 1.9548 -1.1045 -8.0762 24 1 1.1123 -2.1256 -7.4034 25 1 1.3370 -0.7295 -9.3735 26 1 3.3105 -1.6612 -8.3161 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.6885 1.8464 0.8900 31 1 1.6885 1.8464 -0.8900 32 1 3.8514 0.5683 0.8409 33 1 3.9784 2.1767 0.0889 34 1 5.8035 1.2476 0.5146 35 1 10.3695 1.1314 1.0376 36 1 9.9757 -0.2888 0.0391 37 1 10.1022 1.3200 -0.7119 38 1 9.0984 -0.1165 -1.8458 39 1 7.5558 -0.8232 -3.6184 40 1 7.0820 -0.2325 -5.5506 41 1 6.0968 1.1552 -6.0721 42 1 6.6520 1.0419 -4.3847 43 1 4.6315 -0.7400 -6.8865 44 1 3.6047 -1.5273 -5.6642 45 1 0.4881 1.3088 -7.7512 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188233206.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:21 Heat of formation + Delta-G solvation = -110.132970 kcal Electronic energy + Delta-G solvation = -28060.450504 eV Core-core repulsion = 24045.154435 eV Total energy + Delta-G solvation = -4015.296069 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.67984 -39.23363 -38.64027 -37.50073 -36.21210 -34.73315 -32.48786 -31.02762 -30.98161 -29.37416 -28.25473 -27.38850 -26.24061 -25.87018 -23.73954 -23.31144 -21.67642 -21.58566 -19.22087 -18.49250 -17.00475 -16.83804 -16.78612 -16.60102 -16.42914 -15.96669 -15.40452 -15.32029 -15.16404 -14.96043 -14.60631 -14.34480 -13.99553 -13.74587 -13.38910 -12.83724 -12.67772 -12.62417 -12.37913 -12.28533 -12.12528 -12.06020 -11.85529 -11.60918 -11.41070 -11.40761 -11.03963 -10.99644 -10.83410 -10.53514 -10.42240 -10.07402 -9.58619 -9.46214 -8.93974 -8.60188 -8.51290 -7.98537 -7.55196 -6.01409 -3.98991 1.18407 1.40323 2.97568 3.27708 3.34855 3.38014 3.40673 3.43108 3.77052 3.80930 4.15049 4.46570 4.65077 4.83555 4.87856 4.91538 4.93758 5.07080 5.09616 5.18882 5.20366 5.22773 5.32435 5.36449 5.41560 5.43782 5.54844 5.56072 5.73229 5.76286 5.83704 5.90797 6.03357 6.21828 6.27425 6.29257 6.50721 6.79753 7.05575 7.15344 7.22166 7.45506 7.52317 7.69666 8.37516 8.56201 9.02720 9.14241 9.59621 11.12192 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.009726 B = 0.004601 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2878.060362 B = 6084.543311 C = 8408.999720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.379 6.379 3 C 0.062 3.938 4 C 0.057 3.943 5 O -0.273 6.273 6 C 0.217 3.783 7 C -0.255 4.255 8 C 0.177 3.823 9 O -0.316 6.316 10 C 0.027 3.973 11 C -0.254 4.254 12 C -0.013 4.013 13 C -0.185 4.185 14 C 0.560 3.440 15 O -0.522 6.522 16 N -0.595 5.595 17 C 0.080 3.920 18 C 0.216 3.784 19 C -0.524 4.524 20 H 0.074 0.926 21 C 0.072 3.928 22 N -0.900 5.900 23 Si 0.876 3.124 24 H -0.273 1.273 25 H -0.286 1.286 26 H -0.266 1.266 27 H 0.036 0.964 28 H 0.046 0.954 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.139 0.861 35 H 0.098 0.902 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.132 0.868 39 H 0.138 0.862 40 H 0.044 0.956 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.030 0.970 44 H 0.038 0.962 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.013 0.970 15.795 21.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.298 6.298 3 C -0.015 4.015 4 C -0.018 4.018 5 O -0.184 6.184 6 C 0.168 3.832 7 C -0.274 4.274 8 C 0.131 3.869 9 O -0.229 6.229 10 C -0.068 4.068 11 C -0.273 4.273 12 C -0.032 4.032 13 C -0.189 4.189 14 C 0.347 3.653 15 O -0.398 6.398 16 N -0.327 5.327 17 C -0.064 4.064 18 C 0.096 3.904 19 C -0.563 4.563 20 H 0.093 0.907 21 C -0.130 4.130 22 N -0.539 5.539 23 Si 0.703 3.297 24 H -0.199 1.199 25 H -0.212 1.212 26 H -0.190 1.190 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.104 0.896 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.156 0.844 35 H 0.117 0.883 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.150 0.850 39 H 0.156 0.844 40 H 0.062 0.938 41 H 0.092 0.908 42 H 0.083 0.917 43 H 0.048 0.952 44 H 0.056 0.944 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 13.209 0.537 15.872 20.656 hybrid contribution -0.041 -0.281 -0.592 0.656 sum 13.167 0.255 15.280 20.172 Atomic orbital electron populations 1.22743 0.80882 1.02966 0.99821 1.87994 1.19799 1.26629 1.95353 1.22535 0.91252 0.86222 1.01449 1.22939 0.94402 0.98012 0.86453 1.86401 1.18571 1.75027 1.38355 1.18561 0.82814 0.90397 0.91389 1.20246 0.90819 1.14206 1.02127 1.18765 0.89226 0.91787 0.87088 1.86006 1.17389 1.78295 1.41216 1.23084 0.79060 1.01588 1.03072 1.20973 1.00444 1.10360 0.95525 1.20971 0.90545 0.93878 0.97816 1.19383 0.94038 1.09606 0.95878 1.17756 0.84755 0.80768 0.82051 1.90785 1.29260 1.38050 1.81693 1.47711 1.21828 1.55487 1.07697 1.21805 0.86754 0.96181 1.01615 1.19655 0.87932 0.97594 0.85242 1.21356 1.09887 1.04459 1.20568 0.90749 1.24846 0.95158 0.96107 0.96911 1.69906 1.15373 1.32534 1.36064 0.86857 0.78949 0.83811 0.80128 1.19893 1.21165 1.19039 0.94516 0.93504 0.89562 0.91331 0.91548 0.90966 0.90324 0.84362 0.88319 0.92416 0.92351 0.85023 0.84388 0.93775 0.90845 0.91691 0.95244 0.94398 0.92699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.54 16 2 O -0.38 -6.34 10.67 -40.08 -0.43 -6.77 16 3 C 0.06 0.85 6.32 37.16 0.23 1.09 16 4 C 0.06 0.79 5.12 37.16 0.19 0.98 16 5 O -0.27 -5.25 9.14 -36.36 -0.33 -5.59 16 6 C 0.22 3.82 6.67 -38.73 -0.26 3.57 16 7 C -0.25 -3.61 8.96 -39.34 -0.35 -3.96 16 8 C 0.18 2.27 6.69 -39.06 -0.26 2.01 16 9 O -0.32 -3.49 10.48 -18.86 -0.20 -3.69 16 10 C 0.03 0.18 9.80 101.05 0.99 1.17 16 11 C -0.25 -3.01 9.01 -39.48 -0.36 -3.37 16 12 C -0.01 -0.19 7.60 -39.23 -0.30 -0.49 16 13 C -0.18 -3.41 4.90 -104.83 -0.51 -3.92 16 14 C 0.56 12.92 6.94 -12.57 -0.09 12.84 16 15 O -0.52 -14.35 16.09 -4.10 -0.07 -14.41 16 16 N -0.60 -13.27 2.86 -184.27 -0.53 -13.80 16 17 C 0.08 1.34 9.09 59.84 0.54 1.88 16 18 C 0.22 5.57 4.28 -5.19 -0.02 5.54 16 19 C -0.52 -15.64 9.94 -34.44 -0.34 -15.98 16 20 H 0.07 2.44 8.06 -52.49 -0.42 2.02 16 21 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 22 N -0.90 -28.30 13.96 55.43 0.77 -27.53 16 23 Si 0.88 22.15 27.47 -169.99 -4.67 17.48 16 24 H -0.27 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 27 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 0.89 7.66 -51.93 -0.40 0.49 16 33 H 0.08 0.85 7.66 -51.93 -0.40 0.45 16 34 H 0.14 1.66 6.29 -52.49 -0.33 1.33 16 35 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.34 7.65 -51.93 -0.40 -0.06 16 37 H 0.06 0.34 7.65 -51.93 -0.40 -0.06 16 38 H 0.13 1.14 6.27 -52.48 -0.33 0.81 16 39 H 0.14 1.67 6.57 -52.49 -0.34 1.32 16 40 H 0.04 0.59 7.55 -51.93 -0.39 0.20 16 41 H 0.07 1.25 8.09 -51.93 -0.42 0.83 16 42 H 0.06 0.98 5.68 -51.93 -0.30 0.68 16 43 H 0.03 0.71 7.13 -51.93 -0.37 0.34 16 44 H 0.04 1.04 6.79 -51.93 -0.35 0.69 16 45 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 373.42 15.07 5.63 5.63 Total: -1.00 -38.95 373.42 -5.89 -44.83 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -6.55 Total: -1.10 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: 0.48 Total: 4.94 kcal Atomic # 7 Polarization: -41.57 SS G_CDS: 0.25 Total: -41.33 kcal Atomic # 8 Polarization: -29.43 SS G_CDS: -1.02 Total: -30.46 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.67 Total: 17.48 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -38.95 -5.89 -44.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188233206.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.302 kcal (2) G-P(sol) polarization free energy of solvation -38.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds