Wall clock time and date at job start Tue Mar 31 2020 13:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99803 * 2 1 4 4 C 1.52999 * 109.47299 * 180.02562 * 3 2 1 5 5 O 1.42902 * 109.46930 * 64.99677 * 4 3 2 6 6 C 1.35663 * 116.99412 * 179.97438 * 5 4 3 7 7 C 1.38437 * 120.12204 * 0.02562 * 6 5 4 8 8 C 1.38682 * 120.03173 * 179.97438 * 7 6 5 9 9 O 1.35719 * 119.86596 * 180.02562 * 8 7 6 10 10 C 1.42894 * 117.00048 * 180.02562 * 9 8 7 11 11 C 1.39187 * 120.27265 * 0.02562 * 8 7 6 12 12 C 1.37536 * 120.24457 * 359.97438 * 11 8 7 13 13 C 1.39858 * 119.96023 * 359.97438 * 12 11 8 14 14 C 1.47308 * 120.13500 * 180.27522 * 13 12 11 15 15 O 1.21622 * 119.99893 * 130.74268 * 14 13 12 16 16 N 1.34778 * 119.99592 * 310.74430 * 14 13 12 17 17 C 1.46491 * 120.00393 * 4.40291 * 16 14 13 18 18 C 1.46506 * 119.99329 * 184.41107 * 16 14 13 19 19 C 1.50700 * 109.47222 * 90.00031 * 18 16 14 20 20 H 1.07992 * 120.00055 * 359.97438 * 19 18 16 21 21 C 1.37874 * 119.99587 * 179.97438 * 19 18 16 22 22 N 1.31521 * 119.99932 * 179.97438 * 21 19 18 23 23 Si 1.86806 * 120.00323 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.47152 * 89.99983 * 23 21 19 25 25 H 1.48500 * 109.46848 * 209.99968 * 23 21 19 26 26 H 1.48498 * 109.46788 * 329.99734 * 23 21 19 27 27 H 1.09000 * 109.47219 * 299.99548 * 1 2 3 28 28 H 1.08997 * 109.47252 * 60.00751 * 1 2 3 29 29 H 1.09004 * 109.46822 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47122 * 59.99872 * 3 2 1 31 31 H 1.09004 * 109.46774 * 299.99800 * 3 2 1 32 32 H 1.09003 * 109.46766 * 305.00183 * 4 3 2 33 33 H 1.09002 * 109.47193 * 184.99721 * 4 3 2 34 34 H 1.08001 * 119.98751 * 359.95720 * 7 6 5 35 35 H 1.09004 * 109.47249 * 179.97438 * 10 9 8 36 36 H 1.09002 * 109.47289 * 299.99944 * 10 9 8 37 37 H 1.09005 * 109.47444 * 59.99867 * 10 9 8 38 38 H 1.08011 * 119.87922 * 180.02562 * 11 8 7 39 39 H 1.08000 * 120.02421 * 180.02562 * 12 11 8 40 40 H 1.09006 * 109.46557 * 93.02865 * 17 16 14 41 41 H 1.08999 * 109.47509 * 213.02301 * 17 16 14 42 42 H 1.08999 * 109.47542 * 333.03656 * 17 16 14 43 43 H 1.09005 * 109.46346 * 210.00179 * 18 16 14 44 44 H 1.09004 * 109.47192 * 329.99264 * 18 16 14 45 45 H 0.97001 * 119.99997 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 8 3.9648 0.5797 -1.2220 6 6 5.2996 0.3993 -1.3838 7 6 6.1795 0.7942 -0.3907 8 6 7.5436 0.6084 -0.5578 9 8 8.4031 0.9964 0.4182 10 6 9.7951 0.7766 0.1818 11 6 8.0348 0.0256 -1.7225 12 6 7.1708 -0.3710 -2.7164 13 6 5.7932 -0.1893 -2.5578 14 6 4.8639 -0.6181 -3.6173 15 8 3.8933 -1.2954 -3.3373 16 7 5.0894 -0.2599 -4.8969 17 6 6.3080 0.4731 -5.2486 18 6 4.1155 -0.6036 -5.9361 19 6 3.1070 0.5085 -6.0670 20 1 3.1835 1.3835 -5.4387 21 6 2.0867 0.4088 -6.9889 22 7 1.2062 1.3791 -7.1028 23 14 1.9548 -1.1045 -8.0762 24 1 1.1123 -2.1256 -7.4034 25 1 1.3370 -0.7295 -9.3735 26 1 3.3105 -1.6612 -8.3161 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.6885 1.8464 0.8900 31 1 1.6885 1.8464 -0.8900 32 1 3.8514 0.5683 0.8409 33 1 3.9784 2.1767 0.0889 34 1 5.8035 1.2476 0.5146 35 1 10.3695 1.1314 1.0376 36 1 9.9757 -0.2888 0.0391 37 1 10.1022 1.3200 -0.7119 38 1 9.0984 -0.1165 -1.8458 39 1 7.5558 -0.8232 -3.6184 40 1 7.0820 -0.2325 -5.5506 41 1 6.0968 1.1552 -6.0721 42 1 6.6520 1.0419 -4.3847 43 1 4.6315 -0.7400 -6.8865 44 1 3.6047 -1.5273 -5.6642 45 1 0.4881 1.3088 -7.7512 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188233206.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:21 Heat of formation + Delta-G solvation = -139.606957 kcal Electronic energy + Delta-G solvation = -28061.728592 eV Core-core repulsion = 24045.154435 eV Total energy + Delta-G solvation = -4016.574157 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.84420 -40.36881 -40.08194 -38.69516 -37.36325 -36.56984 -34.68863 -32.24427 -32.07830 -30.73098 -29.87537 -28.15526 -27.42687 -27.33271 -25.09544 -24.77056 -23.18368 -22.67506 -20.67302 -19.63762 -19.13791 -18.20775 -18.03101 -17.83334 -17.56429 -17.11168 -16.71062 -16.46717 -16.29568 -16.18955 -16.09135 -15.90958 -15.35786 -15.09643 -14.88923 -14.42642 -13.98226 -13.82644 -13.64337 -13.61145 -13.42749 -13.34375 -13.12858 -13.04897 -12.79640 -12.55711 -12.46608 -12.44429 -12.09044 -12.03307 -11.89635 -11.75308 -11.51874 -10.83408 -10.73601 -10.70590 -9.66650 -9.41436 -9.08686 -8.34142 -6.39093 0.04091 0.32589 1.31488 1.37070 1.45278 1.83821 2.04645 2.28588 2.31259 2.38669 2.72429 2.75952 2.99985 3.66999 3.74286 3.83233 4.02741 4.05018 4.06792 4.21977 4.30942 4.36352 4.39751 4.43478 4.46580 4.48863 4.49569 4.50670 4.63398 4.67617 4.74717 4.77617 4.83777 4.91244 4.94885 5.03098 5.18682 5.23432 5.45756 5.46984 5.63999 6.11896 6.24961 6.28079 6.41117 6.61212 6.70050 7.20896 7.44006 8.83284 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.009726 B = 0.004601 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2878.060362 B = 6084.543311 C = 8408.999720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.417 6.417 3 C 0.057 3.943 4 C 0.050 3.950 5 O -0.322 6.322 6 C 0.195 3.805 7 C -0.257 4.257 8 C 0.188 3.812 9 O -0.323 6.323 10 C 0.013 3.987 11 C -0.238 4.238 12 C -0.004 4.004 13 C -0.224 4.224 14 C 0.553 3.447 15 O -0.586 6.586 16 N -0.603 5.603 17 C 0.075 3.925 18 C 0.225 3.775 19 C -0.536 4.536 20 H 0.022 0.978 21 C 0.011 3.989 22 N -0.946 5.946 23 Si 0.950 3.050 24 H -0.278 1.278 25 H -0.271 1.271 26 H -0.235 1.235 27 H 0.072 0.928 28 H 0.030 0.970 29 H 0.090 0.910 30 H 0.115 0.885 31 H 0.040 0.960 32 H 0.086 0.914 33 H 0.108 0.892 34 H 0.156 0.844 35 H 0.121 0.879 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.175 0.825 39 H 0.160 0.840 40 H 0.089 0.911 41 H 0.064 0.936 42 H 0.082 0.918 43 H 0.056 0.944 44 H 0.017 0.983 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.827 0.452 16.474 24.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.337 6.337 3 C -0.019 4.019 4 C -0.024 4.024 5 O -0.235 6.235 6 C 0.147 3.853 7 C -0.276 4.276 8 C 0.141 3.859 9 O -0.236 6.236 10 C -0.081 4.081 11 C -0.256 4.256 12 C -0.022 4.022 13 C -0.228 4.228 14 C 0.343 3.657 15 O -0.467 6.467 16 N -0.334 5.334 17 C -0.066 4.066 18 C 0.103 3.897 19 C -0.575 4.575 20 H 0.041 0.959 21 C -0.187 4.187 22 N -0.586 5.586 23 Si 0.772 3.228 24 H -0.204 1.204 25 H -0.196 1.196 26 H -0.158 1.158 27 H 0.091 0.909 28 H 0.049 0.951 29 H 0.108 0.892 30 H 0.132 0.868 31 H 0.059 0.941 32 H 0.104 0.896 33 H 0.125 0.875 34 H 0.174 0.826 35 H 0.140 0.860 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.192 0.808 39 H 0.178 0.822 40 H 0.107 0.893 41 H 0.083 0.917 42 H 0.100 0.900 43 H 0.074 0.926 44 H 0.035 0.965 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 17.100 0.059 16.557 23.803 hybrid contribution -1.117 0.017 -0.631 1.283 sum 15.984 0.076 15.926 22.564 Atomic orbital electron populations 1.22892 0.79558 1.03640 1.00753 1.87937 1.21561 1.28586 1.95586 1.22778 0.91495 0.85306 1.02289 1.23272 0.94369 0.99494 0.85279 1.86342 1.20128 1.76093 1.40907 1.18826 0.82757 0.91535 0.92203 1.20352 0.91379 1.14080 1.01811 1.18889 0.89081 0.90330 0.87590 1.86023 1.19307 1.77678 1.40603 1.23498 0.76628 1.02940 1.05036 1.21355 1.02099 1.08181 0.93986 1.21179 0.88618 0.93146 0.99257 1.19243 0.95094 1.13207 0.95263 1.18566 0.84695 0.79509 0.82948 1.90720 1.32316 1.40962 1.82711 1.47826 1.22740 1.55716 1.07104 1.22117 0.85449 0.96949 1.02126 1.19348 0.88122 0.94894 0.87379 1.21542 1.11849 1.04162 1.19909 0.95929 1.25872 0.94369 0.99844 0.98598 1.70060 1.16251 1.35050 1.37245 0.85691 0.80448 0.78733 0.77933 1.20406 1.19595 1.15802 0.90948 0.95089 0.89163 0.86768 0.94142 0.89572 0.87455 0.82635 0.86043 0.91081 0.90870 0.80798 0.82212 0.89301 0.91676 0.89996 0.92577 0.96506 0.92248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 11.01 113.37 1.25 2.01 16 2 O -0.42 -14.76 10.67 -144.34 -1.54 -16.30 16 3 C 0.06 1.65 6.32 71.98 0.45 2.10 16 4 C 0.05 1.42 5.12 71.98 0.37 1.79 16 5 O -0.32 -13.26 9.14 -72.89 -0.67 -13.92 16 6 C 0.19 7.04 6.67 22.82 0.15 7.19 16 7 C -0.26 -6.96 8.96 22.42 0.20 -6.76 16 8 C 0.19 4.21 6.69 22.60 0.15 4.36 16 9 O -0.32 -5.84 10.48 -90.41 -0.95 -6.78 16 10 C 0.01 0.11 9.80 113.37 1.11 1.22 16 11 C -0.24 -4.65 9.01 22.33 0.20 -4.45 16 12 C 0.00 -0.09 7.60 22.50 0.17 0.08 16 13 C -0.22 -8.36 4.90 -20.00 -0.10 -8.46 16 14 C 0.55 26.72 6.94 86.63 0.60 27.32 16 15 O -0.59 -34.60 16.09 4.84 0.08 -34.52 16 16 N -0.60 -27.46 2.86 -855.17 -2.44 -29.90 16 17 C 0.08 2.41 9.09 127.77 1.16 3.58 16 18 C 0.22 11.82 4.28 85.63 0.37 12.19 16 19 C -0.54 -33.63 9.94 25.60 0.25 -33.38 16 20 H 0.02 1.59 8.06 -2.91 -0.02 1.57 16 21 C 0.01 0.67 5.47 84.65 0.46 1.13 16 22 N -0.95 -61.95 13.96 21.45 0.30 -61.65 16 23 Si 0.95 46.31 27.47 68.60 1.88 48.20 16 24 H -0.28 -13.74 7.11 99.48 0.71 -13.04 16 25 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 26 H -0.24 -10.23 6.54 99.48 0.65 -9.58 16 27 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.09 2.33 8.14 -2.38 -0.02 2.31 16 30 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.09 2.12 7.66 -2.39 -0.02 2.10 16 33 H 0.11 2.29 7.66 -2.39 -0.02 2.27 16 34 H 0.16 3.48 6.29 -2.91 -0.02 3.46 16 35 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.07 0.46 7.65 -2.39 -0.02 0.44 16 37 H 0.07 0.45 7.65 -2.38 -0.02 0.43 16 38 H 0.17 1.92 6.27 -2.91 -0.02 1.90 16 39 H 0.16 3.27 6.57 -2.91 -0.02 3.25 16 40 H 0.09 2.06 7.55 -2.38 -0.02 2.05 16 41 H 0.06 2.18 8.09 -2.39 -0.02 2.16 16 42 H 0.08 2.34 5.68 -2.39 -0.01 2.33 16 43 H 0.06 2.64 7.13 -2.38 -0.02 2.62 16 44 H 0.02 0.95 6.79 -2.39 -0.02 0.94 16 45 H 0.27 16.25 8.31 -92.71 -0.77 15.48 16 Total: -1.00 -94.22 373.42 4.41 -89.81 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: 0.94 Total: 15.17 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: 6.81 Total: 9.91 kcal Atomic # 7 Polarization: -89.41 SS G_CDS: -2.14 Total: -91.55 kcal Atomic # 8 Polarization: -68.46 SS G_CDS: -3.08 Total: -71.53 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 1.88 Total: 48.20 kcal Total: -94.22 4.41 -89.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188233206.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.801 kcal (2) G-P(sol) polarization free energy of solvation -94.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds