Wall clock time and date at job start Tue Mar 31 2020 13:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42898 * 109.47535 * 2 1 4 4 C 1.42901 * 114.00258 * 180.02562 * 3 2 1 5 5 C 1.53785 * 113.69063 * 110.93650 * 4 3 2 6 6 C 1.53779 * 87.08093 * 139.99216 * 5 4 3 7 7 C 1.52999 * 113.61451 * 220.01770 * 6 5 4 8 8 C 1.50699 * 109.47130 * 272.49762 * 7 6 5 9 9 O 1.21284 * 119.99980 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00176 * 179.97438 * 8 7 6 11 11 C 1.46504 * 120.00093 * 180.02562 * 10 8 7 12 12 C 1.50701 * 109.47081 * 89.99834 * 11 10 8 13 13 H 1.07997 * 120.00179 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99847 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00143 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99903 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47340 * 89.99756 * 16 14 12 18 18 H 1.48498 * 109.47069 * 209.99947 * 16 14 12 19 19 H 1.48494 * 109.46987 * 329.99486 * 16 14 12 20 20 C 1.46496 * 119.99908 * 359.97438 * 10 8 7 21 21 C 1.52996 * 109.47208 * 90.00000 * 20 10 8 22 22 F 1.39902 * 109.47067 * 59.99721 * 21 20 10 23 23 F 1.39901 * 109.47717 * 180.02562 * 21 20 10 24 24 F 1.39902 * 109.47052 * 300.00084 * 21 20 10 25 25 C 1.53781 * 113.61413 * 208.47320 * 4 3 2 26 26 H 1.09005 * 109.46855 * 59.99452 * 1 2 3 27 27 H 1.08992 * 109.47444 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.46871 * 300.00023 * 1 2 3 29 29 H 1.09002 * 109.47293 * 240.00060 * 2 1 3 30 30 H 1.09002 * 109.46988 * 119.99797 * 2 1 3 31 31 H 1.09002 * 112.84974 * 339.66626 * 4 3 2 32 32 H 1.09003 * 113.60734 * 254.54335 * 5 4 3 33 33 H 1.08996 * 113.61146 * 25.43833 * 5 4 3 34 34 H 1.09005 * 113.69135 * 89.12376 * 6 5 4 35 35 H 1.09003 * 109.47100 * 32.49589 * 7 6 5 36 36 H 1.08995 * 109.47213 * 152.50009 * 7 6 5 37 37 H 1.08995 * 109.46850 * 210.00185 * 11 10 8 38 38 H 1.09002 * 109.46820 * 330.00239 * 11 10 8 39 39 H 0.96999 * 120.00417 * 179.97438 * 15 14 12 40 40 H 1.09000 * 109.47241 * 210.00137 * 20 10 8 41 41 H 1.09002 * 109.47339 * 330.00323 * 20 10 8 42 42 H 1.09005 * 113.61302 * 334.47944 * 25 4 3 43 43 H 1.08993 * 113.62030 * 105.38790 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4600 -0.0006 5 6 4.0067 2.0106 -1.3160 6 6 4.9921 2.8184 -0.4551 7 6 5.2358 4.2379 -0.9712 8 6 6.3561 4.2205 -1.9791 9 8 6.9052 3.1755 -2.2574 10 7 6.7472 5.3660 -2.5718 11 6 7.8359 5.3490 -3.5520 12 6 7.2679 5.1254 -4.9298 13 1 6.2025 5.0082 -5.0622 14 6 8.1085 5.0705 -6.0214 15 7 9.4058 5.2137 -5.8603 16 14 7.4043 4.7941 -7.7294 17 1 7.0871 6.1044 -8.3521 18 1 8.4004 4.0769 -8.5653 19 1 6.1658 3.9812 -7.6285 20 6 6.0829 6.6280 -2.2368 21 6 6.8064 7.2890 -1.0619 22 9 8.1362 7.5415 -1.4155 23 9 6.1717 8.4939 -0.7415 24 9 6.7726 6.4356 0.0463 25 6 3.9476 2.7433 0.6711 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8901 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.9274 0.5544 0.3481 32 1 4.4870 1.2518 -1.9338 33 1 3.3049 2.6303 -1.8742 34 1 5.9159 2.2854 -0.2300 35 1 4.3281 4.6137 -1.4435 36 1 5.5069 4.8860 -0.1379 37 1 8.3627 6.3028 -3.5264 38 1 8.5300 4.5440 -3.3101 39 1 9.9972 5.1748 -6.6281 40 1 6.1092 7.2928 -3.1002 41 1 5.0468 6.4312 -1.9612 42 1 3.2296 3.5634 0.6562 43 1 4.3802 2.5761 1.6575 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188901985.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:05 Heat of formation + Delta-G solvation = -224.121610 kcal Electronic energy + Delta-G solvation = -28561.149293 eV Core-core repulsion = 23999.053566 eV Total energy + Delta-G solvation = -4562.095727 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.150 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.85838 -47.43012 -47.28361 -39.92175 -38.75662 -36.51510 -35.23470 -32.83102 -31.39642 -29.92002 -29.18931 -26.80464 -25.66044 -23.73244 -23.29353 -22.96684 -22.03289 -19.52812 -18.97565 -18.29793 -18.16820 -17.47464 -16.92897 -16.49940 -16.01636 -15.76010 -15.49529 -15.37216 -14.69918 -14.42977 -14.18115 -14.14964 -14.02471 -13.77671 -13.51037 -13.45711 -13.22205 -12.98482 -12.78874 -12.54901 -12.40681 -12.33102 -12.15247 -12.02171 -11.78138 -11.40210 -11.26934 -11.25423 -11.00094 -10.76616 -10.69877 -10.55352 -10.25243 -10.18021 -9.77036 -9.45056 -9.04779 -8.49654 -8.01187 -6.10650 -4.16365 2.85205 3.26413 3.29536 3.34198 3.38815 3.48773 3.63139 4.12950 4.23957 4.39307 4.41080 4.58633 4.63937 4.80566 4.81310 4.92001 5.03340 5.09536 5.17578 5.18843 5.20622 5.25017 5.47020 5.53334 5.66079 5.69311 5.72779 5.78843 5.81262 5.84625 5.91441 6.15397 6.24492 6.48462 6.87514 7.20727 7.29074 7.36831 7.84143 8.10405 8.13649 8.77871 8.91684 9.48973 10.97689 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.009907 B = 0.003964 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2825.566504 B = 7061.047145 C = 9167.931750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.377 6.377 4 C 0.061 3.939 5 C -0.146 4.146 6 C -0.089 4.089 7 C -0.144 4.144 8 C 0.513 3.487 9 O -0.521 6.521 10 N -0.599 5.599 11 C 0.242 3.758 12 C -0.532 4.532 13 H 0.059 0.941 14 C 0.063 3.937 15 N -0.891 5.891 16 Si 0.899 3.101 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.274 1.274 20 C 0.075 3.925 21 C 0.428 3.572 22 F -0.174 7.174 23 F -0.188 7.188 24 F -0.186 7.186 25 C -0.131 4.131 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.048 0.952 30 H 0.046 0.954 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.102 0.898 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.039 0.961 38 H 0.048 0.952 39 H 0.264 0.736 40 H 0.128 0.872 41 H 0.112 0.888 42 H 0.090 0.910 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.387 -2.028 13.406 19.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.296 6.296 4 C 0.003 3.997 5 C -0.184 4.184 6 C -0.108 4.108 7 C -0.184 4.184 8 C 0.300 3.700 9 O -0.396 6.396 10 N -0.331 5.331 11 C 0.124 3.876 12 C -0.571 4.571 13 H 0.077 0.923 14 C -0.140 4.140 15 N -0.530 5.530 16 Si 0.727 3.273 17 H -0.206 1.206 18 H -0.211 1.211 19 H -0.199 1.199 20 C -0.054 4.054 21 C 0.372 3.628 22 F -0.156 7.156 23 F -0.170 7.170 24 F -0.168 7.168 25 C -0.168 4.168 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.103 0.897 32 H 0.091 0.909 33 H 0.106 0.894 34 H 0.120 0.880 35 H 0.108 0.892 36 H 0.119 0.881 37 H 0.057 0.943 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.146 0.854 41 H 0.130 0.870 42 H 0.109 0.891 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.988 -2.457 13.153 18.647 hybrid contribution 0.024 -0.096 -0.844 0.849 sum -12.964 -2.552 12.309 18.058 Atomic orbital electron populations 1.21747 0.94009 1.02056 1.03051 1.22478 0.95414 0.84341 0.99927 1.87937 1.21048 1.25952 1.94671 1.23711 0.80542 0.97892 0.97548 1.23535 0.97829 1.00298 0.96745 1.22034 0.97766 0.95027 0.95955 1.21944 0.98331 0.98936 0.99214 1.20488 0.84275 0.83666 0.81528 1.90675 1.55957 1.30011 1.62936 1.48234 1.37806 1.04155 1.42915 1.19477 0.83921 0.98979 0.85237 1.21387 0.93882 1.50487 0.91306 0.92283 1.24933 0.94740 0.94945 0.99360 1.69931 1.02519 1.49478 1.31052 0.86481 0.78898 0.78249 0.83707 1.20571 1.21058 1.19873 1.22596 0.96918 0.90170 0.95676 1.21764 0.78960 0.76777 0.85327 1.93223 1.36498 1.94205 1.91655 1.93157 1.82005 1.47968 1.93856 1.93088 1.96273 1.70349 1.57041 1.23300 0.97789 0.97646 0.98093 0.91845 0.91324 0.91982 0.93394 0.93615 0.89730 0.90900 0.89434 0.87962 0.89206 0.88147 0.94279 0.93373 0.92584 0.85360 0.87032 0.89134 0.91028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 10.28 37.16 0.38 -0.80 16 2 C 0.06 0.52 6.50 37.16 0.24 0.76 16 3 O -0.38 -4.53 10.36 -35.23 -0.36 -4.89 16 4 C 0.06 0.70 4.30 -25.92 -0.11 0.59 16 5 C -0.15 -1.96 7.47 -25.92 -0.19 -2.15 16 6 C -0.09 -1.19 3.15 -89.81 -0.28 -1.47 16 7 C -0.14 -2.04 4.02 -27.88 -0.11 -2.15 16 8 C 0.51 10.05 7.34 -10.99 -0.08 9.97 16 9 O -0.52 -12.39 15.34 5.55 0.09 -12.30 16 10 N -0.60 -11.94 2.37 -175.06 -0.42 -12.35 16 11 C 0.24 6.10 4.96 -5.19 -0.03 6.07 16 12 C -0.53 -14.51 9.39 -34.44 -0.32 -14.83 16 13 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 14 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 15 N -0.89 -26.03 13.29 55.43 0.74 -25.29 16 16 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 20 C 0.07 1.11 5.33 -4.05 -0.02 1.08 16 21 C 0.43 6.32 3.29 37.16 0.12 6.44 16 22 F -0.17 -3.06 16.23 2.25 0.04 -3.03 16 23 F -0.19 -2.51 17.32 2.25 0.04 -2.47 16 24 F -0.19 -2.73 14.29 2.25 0.03 -2.70 16 25 C -0.13 -1.43 7.47 -25.92 -0.19 -1.62 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.48 8.14 -51.92 -0.42 0.05 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.87 7.88 -51.93 -0.41 0.46 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.09 1.19 7.90 -51.93 -0.41 0.78 16 34 H 0.10 1.51 7.68 -51.93 -0.40 1.11 16 35 H 0.09 1.10 7.10 -51.93 -0.37 0.73 16 36 H 0.10 1.28 5.48 -51.93 -0.28 1.00 16 37 H 0.04 1.00 7.26 -51.93 -0.38 0.63 16 38 H 0.05 1.38 7.42 -51.93 -0.39 1.00 16 39 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 40 H 0.13 1.85 8.07 -51.93 -0.42 1.43 16 41 H 0.11 1.25 6.44 -51.93 -0.33 0.92 16 42 H 0.09 0.96 8.10 -51.93 -0.42 0.54 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 365.44 15.07 5.51 5.51 Total: -1.00 -32.02 365.44 -6.37 -38.39 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -6.31 Total: -0.75 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: -0.70 Total: 3.54 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: 0.32 Total: -37.65 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: -0.28 Total: -17.20 kcal Atomic # 9 Polarization: -8.30 SS G_CDS: 0.11 Total: -8.19 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.02 -6.37 -38.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188901985.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -185.732 kcal (2) G-P(sol) polarization free energy of solvation -32.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -224.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds