Wall clock time and date at job start Tue Mar 31 2020 13:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42898 * 109.47535 * 2 1 4 4 C 1.42901 * 114.00258 * 180.02562 * 3 2 1 5 5 C 1.53785 * 113.69063 * 110.93650 * 4 3 2 6 6 C 1.53779 * 87.08093 * 139.99216 * 5 4 3 7 7 C 1.52999 * 113.61451 * 220.01770 * 6 5 4 8 8 C 1.50699 * 109.47130 * 272.49762 * 7 6 5 9 9 O 1.21284 * 119.99980 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00176 * 179.97438 * 8 7 6 11 11 C 1.46504 * 120.00093 * 180.02562 * 10 8 7 12 12 C 1.50701 * 109.47081 * 89.99834 * 11 10 8 13 13 H 1.07997 * 120.00179 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99847 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00143 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99903 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47340 * 89.99756 * 16 14 12 18 18 H 1.48498 * 109.47069 * 209.99947 * 16 14 12 19 19 H 1.48494 * 109.46987 * 329.99486 * 16 14 12 20 20 C 1.46496 * 119.99908 * 359.97438 * 10 8 7 21 21 C 1.52996 * 109.47208 * 90.00000 * 20 10 8 22 22 F 1.39902 * 109.47067 * 59.99721 * 21 20 10 23 23 F 1.39901 * 109.47717 * 180.02562 * 21 20 10 24 24 F 1.39902 * 109.47052 * 300.00084 * 21 20 10 25 25 C 1.53781 * 113.61413 * 208.47320 * 4 3 2 26 26 H 1.09005 * 109.46855 * 59.99452 * 1 2 3 27 27 H 1.08992 * 109.47444 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.46871 * 300.00023 * 1 2 3 29 29 H 1.09002 * 109.47293 * 240.00060 * 2 1 3 30 30 H 1.09002 * 109.46988 * 119.99797 * 2 1 3 31 31 H 1.09002 * 112.84974 * 339.66626 * 4 3 2 32 32 H 1.09003 * 113.60734 * 254.54335 * 5 4 3 33 33 H 1.08996 * 113.61146 * 25.43833 * 5 4 3 34 34 H 1.09005 * 113.69135 * 89.12376 * 6 5 4 35 35 H 1.09003 * 109.47100 * 32.49589 * 7 6 5 36 36 H 1.08995 * 109.47213 * 152.50009 * 7 6 5 37 37 H 1.08995 * 109.46850 * 210.00185 * 11 10 8 38 38 H 1.09002 * 109.46820 * 330.00239 * 11 10 8 39 39 H 0.96999 * 120.00417 * 179.97438 * 15 14 12 40 40 H 1.09000 * 109.47241 * 210.00137 * 20 10 8 41 41 H 1.09002 * 109.47339 * 330.00323 * 20 10 8 42 42 H 1.09005 * 113.61302 * 334.47944 * 25 4 3 43 43 H 1.08993 * 113.62030 * 105.38790 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4600 -0.0006 5 6 4.0067 2.0106 -1.3160 6 6 4.9921 2.8184 -0.4551 7 6 5.2358 4.2379 -0.9712 8 6 6.3561 4.2205 -1.9791 9 8 6.9052 3.1755 -2.2574 10 7 6.7472 5.3660 -2.5718 11 6 7.8359 5.3490 -3.5520 12 6 7.2679 5.1254 -4.9298 13 1 6.2025 5.0082 -5.0622 14 6 8.1085 5.0705 -6.0214 15 7 9.4058 5.2137 -5.8603 16 14 7.4043 4.7941 -7.7294 17 1 7.0871 6.1044 -8.3521 18 1 8.4004 4.0769 -8.5653 19 1 6.1658 3.9812 -7.6285 20 6 6.0829 6.6280 -2.2368 21 6 6.8064 7.2890 -1.0619 22 9 8.1362 7.5415 -1.4155 23 9 6.1717 8.4939 -0.7415 24 9 6.7726 6.4356 0.0463 25 6 3.9476 2.7433 0.6711 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8901 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.9274 0.5544 0.3481 32 1 4.4870 1.2518 -1.9338 33 1 3.3049 2.6303 -1.8742 34 1 5.9159 2.2854 -0.2300 35 1 4.3281 4.6137 -1.4435 36 1 5.5069 4.8860 -0.1379 37 1 8.3627 6.3028 -3.5264 38 1 8.5300 4.5440 -3.3101 39 1 9.9972 5.1748 -6.6281 40 1 6.1092 7.2928 -3.1002 41 1 5.0468 6.4312 -1.9612 42 1 3.2296 3.5634 0.6562 43 1 4.3802 2.5761 1.6575 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188901985.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:04 Heat of formation + Delta-G solvation = -243.144475 kcal Electronic energy + Delta-G solvation = -28561.974187 eV Core-core repulsion = 23999.053566 eV Total energy + Delta-G solvation = -4562.920621 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.150 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -51.07363 -48.60611 -48.55170 -41.17869 -39.99937 -37.48060 -36.83489 -34.87298 -32.26151 -31.25617 -30.53447 -28.56729 -26.61579 -25.34442 -24.58389 -23.81390 -23.28990 -20.65783 -20.27735 -19.52541 -19.42474 -19.00786 -18.29525 -17.88521 -17.53259 -17.05847 -16.54768 -16.41761 -16.22516 -15.87181 -15.48324 -15.43464 -15.21164 -14.98639 -14.77399 -14.70472 -14.46599 -14.27563 -14.06815 -13.65024 -13.61479 -13.48033 -13.31037 -13.18528 -13.04850 -12.96865 -12.83291 -12.56564 -12.23016 -12.19629 -12.13775 -11.76566 -11.72964 -11.55977 -11.21209 -10.66399 -10.63834 -10.31762 -9.74899 -8.23302 -6.37629 1.38204 1.40886 1.50684 1.51839 1.87957 2.07358 2.39744 2.79491 2.89672 3.04865 3.07662 3.20970 3.53790 3.65195 3.81288 3.88201 3.95631 4.03424 4.17641 4.22607 4.35924 4.38533 4.52339 4.56737 4.68273 4.73793 4.87114 4.89954 4.92386 4.98822 5.05212 5.12541 5.20033 5.27030 5.30175 5.42837 5.47796 5.74217 6.02388 6.37937 6.49907 6.71940 7.23722 7.37452 8.84825 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.009907 B = 0.003964 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2825.566504 B = 7061.047145 C = 9167.931750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.046 3.954 3 O -0.391 6.391 4 C 0.066 3.934 5 C -0.154 4.154 6 C -0.095 4.095 7 C -0.130 4.130 8 C 0.504 3.496 9 O -0.574 6.574 10 N -0.606 5.606 11 C 0.260 3.740 12 C -0.543 4.543 13 H 0.061 0.939 14 C 0.008 3.992 15 N -0.928 5.928 16 Si 0.968 3.032 17 H -0.263 1.263 18 H -0.285 1.285 19 H -0.271 1.271 20 C 0.070 3.930 21 C 0.435 3.565 22 F -0.195 7.195 23 F -0.174 7.174 24 F -0.184 7.184 25 C -0.114 4.114 26 H 0.055 0.945 27 H 0.087 0.913 28 H 0.063 0.937 29 H 0.045 0.955 30 H 0.059 0.941 31 H 0.094 0.906 32 H 0.049 0.951 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.028 0.972 38 H -0.001 1.001 39 H 0.267 0.733 40 H 0.134 0.866 41 H 0.158 0.842 42 H 0.102 0.898 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.129 -1.445 14.206 21.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.030 4.030 3 O -0.311 6.311 4 C 0.008 3.992 5 C -0.192 4.192 6 C -0.114 4.114 7 C -0.170 4.170 8 C 0.295 3.705 9 O -0.453 6.453 10 N -0.337 5.337 11 C 0.139 3.861 12 C -0.581 4.581 13 H 0.079 0.921 14 C -0.191 4.191 15 N -0.568 5.568 16 Si 0.792 3.208 17 H -0.188 1.188 18 H -0.210 1.210 19 H -0.196 1.196 20 C -0.056 4.056 21 C 0.379 3.621 22 F -0.177 7.177 23 F -0.155 7.155 24 F -0.165 7.165 25 C -0.151 4.151 26 H 0.074 0.926 27 H 0.106 0.894 28 H 0.082 0.918 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.112 0.888 32 H 0.068 0.932 33 H 0.105 0.895 34 H 0.101 0.899 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.046 0.954 38 H 0.018 0.982 39 H 0.076 0.924 40 H 0.152 0.848 41 H 0.176 0.824 42 H 0.121 0.879 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -15.767 -1.836 13.983 21.154 hybrid contribution 0.883 -0.288 -1.055 1.405 sum -14.884 -2.125 12.929 19.830 Atomic orbital electron populations 1.21758 0.92819 1.03263 1.02735 1.22695 0.96454 0.83385 1.00479 1.87911 1.20976 1.27515 1.94653 1.23664 0.80690 0.98728 0.96116 1.23575 0.98012 1.00077 0.97502 1.22004 0.97627 0.94339 0.97448 1.21979 0.96811 1.00072 0.98092 1.21543 0.84775 0.82566 0.81645 1.90648 1.57919 1.31981 1.64759 1.48120 1.37009 1.06523 1.42045 1.18869 0.84832 0.96357 0.86045 1.21697 0.93994 1.50078 0.92361 0.92101 1.25856 0.95024 0.94595 1.03633 1.70060 1.03900 1.50527 1.32296 0.85407 0.77967 0.78741 0.78644 1.18789 1.21031 1.19593 1.22943 0.98579 0.87935 0.96106 1.21606 0.78025 0.77196 0.85314 1.93191 1.38237 1.94372 1.91883 1.93188 1.81541 1.47095 1.93725 1.93091 1.96185 1.70348 1.56884 1.23211 0.96583 0.97520 0.97776 0.92574 0.89410 0.91832 0.93630 0.92297 0.88801 0.93182 0.89518 0.89949 0.86316 0.86125 0.95352 0.98242 0.92433 0.84822 0.82445 0.87945 0.89282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 10.28 71.98 0.74 -1.29 16 2 C 0.05 0.79 6.50 71.98 0.47 1.25 16 3 O -0.39 -8.62 10.36 -148.98 -1.54 -10.16 16 4 C 0.07 1.40 4.30 31.12 0.13 1.53 16 5 C -0.15 -4.04 7.47 31.12 0.23 -3.80 16 6 C -0.10 -2.44 3.15 -10.27 -0.03 -2.47 16 7 C -0.13 -3.40 4.02 29.85 0.12 -3.28 16 8 C 0.50 19.82 7.34 87.66 0.64 20.46 16 9 O -0.57 -28.51 15.34 -3.04 -0.05 -28.56 16 10 N -0.61 -24.17 2.37 -826.16 -1.96 -26.13 16 11 C 0.26 13.57 4.96 85.63 0.42 14.00 16 12 C -0.54 -30.12 9.39 25.60 0.24 -29.88 16 13 H 0.06 3.28 7.81 -2.91 -0.02 3.25 16 14 C 0.01 0.46 5.46 84.66 0.46 0.92 16 15 N -0.93 -55.64 13.29 21.45 0.28 -55.35 16 16 Si 0.97 44.00 29.54 68.60 2.03 46.02 16 17 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 18 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 19 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 20 C 0.07 1.95 5.33 86.38 0.46 2.41 16 21 C 0.43 12.07 3.29 71.98 0.24 12.30 16 22 F -0.20 -6.84 16.23 44.97 0.73 -6.11 16 23 F -0.17 -4.16 17.32 44.97 0.78 -3.38 16 24 F -0.18 -4.99 14.29 44.97 0.64 -4.35 16 25 C -0.11 -2.16 7.47 31.12 0.23 -1.92 16 26 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 27 H 0.09 0.84 8.14 -2.39 -0.02 0.83 16 28 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 29 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.09 1.80 7.88 -2.39 -0.02 1.78 16 32 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.09 2.25 7.90 -2.39 -0.02 2.24 16 34 H 0.08 2.46 7.68 -2.38 -0.02 2.44 16 35 H 0.12 2.45 7.10 -2.39 -0.02 2.43 16 36 H 0.12 2.70 5.48 -2.39 -0.01 2.68 16 37 H 0.03 1.52 7.26 -2.39 -0.02 1.51 16 38 H 0.00 -0.03 7.42 -2.39 -0.02 -0.05 16 39 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 40 H 0.13 3.61 8.07 -2.39 -0.02 3.59 16 41 H 0.16 2.89 6.44 -2.39 -0.02 2.88 16 42 H 0.10 1.75 8.10 -2.38 -0.02 1.73 16 43 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -72.41 365.44 6.29 -66.12 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: 1.02 Total: 11.67 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: 4.36 Total: 10.23 kcal Atomic # 7 Polarization: -79.80 SS G_CDS: -1.68 Total: -81.48 kcal Atomic # 8 Polarization: -37.13 SS G_CDS: -1.59 Total: -38.72 kcal Atomic # 9 Polarization: -16.00 SS G_CDS: 2.15 Total: -13.85 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -72.41 6.29 -66.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188901985.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.024 kcal (2) G-P(sol) polarization free energy of solvation -72.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -249.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -243.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds