Wall clock time and date at job start Tue Mar 31 2020 14:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 114.00182 * 2 1 4 4 C 1.53001 * 109.47180 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.46912 * 180.02562 * 4 3 2 6 6 N 1.46500 * 109.47140 * 180.02562 * 5 4 3 7 7 C 1.46503 * 119.99952 * 270.00100 * 6 5 4 8 8 C 1.52994 * 109.46902 * 267.67704 * 7 6 5 9 9 O 1.42898 * 109.47571 * 64.99736 * 8 7 6 10 10 C 1.34777 * 119.99982 * 89.99610 * 6 5 4 11 11 O 1.21591 * 120.00134 * 356.70163 * 10 6 5 12 12 C 1.47530 * 119.99663 * 176.70498 * 10 6 5 13 13 C 1.39660 * 120.20460 * 57.57963 * 12 10 6 14 14 C 1.37822 * 119.92659 * 180.02562 * 13 12 10 15 15 C 1.38570 * 120.32247 * 0.02562 * 14 13 12 16 16 C 1.38030 * 120.40240 * 0.02562 * 15 14 13 17 17 C 1.38840 * 120.06997 * 359.95185 * 16 15 14 18 18 O 1.35515 * 120.15810 * 180.02562 * 17 16 15 19 19 C 1.34813 * 117.00452 * 355.38436 * 18 17 16 20 20 H 1.08004 * 119.99765 * 4.80900 * 19 18 17 21 21 C 1.38701 * 120.00034 * 184.79576 * 19 18 17 22 22 N 1.31520 * 120.00054 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99698 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47453 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.46732 * 120.00596 * 23 21 19 26 26 H 1.48496 * 109.47120 * 240.00464 * 23 21 19 27 27 H 1.09007 * 109.47163 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46720 * 299.99218 * 1 2 3 29 29 H 1.08997 * 109.47563 * 59.99336 * 1 2 3 30 30 H 1.09009 * 109.46565 * 60.00373 * 3 2 1 31 31 H 1.08997 * 109.47470 * 300.00699 * 3 2 1 32 32 H 1.08997 * 109.47028 * 60.00243 * 4 3 2 33 33 H 1.09005 * 109.47043 * 300.00230 * 4 3 2 34 34 H 1.08997 * 109.47447 * 60.00044 * 5 4 3 35 35 H 1.08997 * 109.47232 * 300.00026 * 5 4 3 36 36 H 1.09004 * 109.47060 * 27.67451 * 7 6 5 37 37 H 1.08993 * 109.47248 * 147.67330 * 7 6 5 38 38 H 1.09004 * 109.47390 * 185.00217 * 8 7 6 39 39 H 1.09007 * 109.46883 * 304.99660 * 8 7 6 40 40 H 0.96698 * 114.00544 * 179.97438 * 9 8 7 41 41 H 1.08007 * 120.03601 * 0.27746 * 13 12 10 42 42 H 1.07993 * 119.84259 * 180.02562 * 14 13 12 43 43 H 1.08007 * 119.80288 * 179.97438 * 15 14 13 44 44 H 1.08000 * 119.96701 * 179.97438 * 16 15 14 45 45 H 0.96998 * 119.99941 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5823 0.0000 6 7 5.6182 2.4667 -0.0012 7 6 6.3494 2.4078 1.2669 8 6 6.7681 3.8201 1.6801 9 8 5.6034 4.6022 1.9513 10 6 6.2891 2.4144 -1.1690 11 8 5.6789 2.4026 -2.2207 12 6 7.7637 2.3712 -1.1712 13 6 8.4378 1.3508 -0.4968 14 6 9.8156 1.3164 -0.5021 15 6 10.5371 2.2904 -1.1735 16 6 9.8847 3.3057 -1.8435 17 6 8.4973 3.3560 -1.8493 18 8 7.8549 4.3517 -2.5069 19 6 8.6204 5.3163 -3.0556 20 1 9.6968 5.2326 -3.0276 21 6 8.0255 6.4159 -3.6563 22 7 6.7147 6.5178 -3.6902 23 14 9.0863 7.7520 -4.4173 24 1 10.5196 7.4023 -4.2486 25 1 8.7727 7.8690 -5.8640 26 1 8.8098 9.0467 -3.7446 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.6886 1.8463 0.8901 31 1 1.6886 1.8464 -0.8899 32 1 3.8567 0.6439 -0.8909 33 1 3.8575 0.6434 0.8891 34 1 3.8365 3.1227 0.8904 35 1 3.8358 3.1238 -0.8895 36 1 5.7077 1.9792 2.0368 37 1 7.2367 1.7864 1.1462 38 1 7.3875 3.7681 2.5756 39 1 7.3358 4.2818 0.8721 40 1 5.7938 5.5114 2.2201 41 1 7.8799 0.5871 0.0249 42 1 10.3354 0.5264 0.0194 43 1 11.6167 2.2556 -1.1718 44 1 10.4541 4.0614 -2.3641 45 1 6.2988 7.2870 -4.1099 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189046668.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:32 Heat of formation + Delta-G solvation = -124.334627 kcal Electronic energy + Delta-G solvation = -28221.353472 eV Core-core repulsion = 24205.441573 eV Total energy + Delta-G solvation = -4015.911899 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.95093 -38.51501 -37.85857 -36.72440 -36.41108 -34.96770 -32.64787 -32.38881 -30.37778 -29.05138 -28.82493 -26.94479 -25.51788 -24.95073 -23.25479 -22.31677 -21.73516 -21.17623 -19.00021 -18.11972 -17.46616 -17.00841 -16.56959 -16.32292 -15.98879 -15.84194 -15.04781 -14.81773 -14.74644 -14.44176 -14.11188 -13.95546 -13.86945 -13.61561 -13.44268 -13.14505 -12.79089 -12.60228 -12.19387 -12.05140 -11.89867 -11.78818 -11.67895 -11.36132 -11.21290 -11.09982 -11.04056 -10.94728 -10.76802 -10.56828 -10.47835 -9.83932 -9.69998 -9.61815 -9.00180 -8.92667 -8.34122 -8.12888 -7.36657 -6.50584 -4.10869 1.79980 2.24753 3.08303 3.09006 3.15113 3.33635 3.45069 3.89152 3.89340 4.38312 4.52881 4.97637 5.02213 5.08504 5.09083 5.14262 5.24937 5.27915 5.33989 5.40136 5.43610 5.47943 5.51298 5.55906 5.62615 5.68681 5.73988 5.82315 5.95262 5.98265 6.08027 6.12357 6.30497 6.42552 6.51920 6.62417 6.91085 6.98037 7.03415 7.13029 7.21337 7.26177 7.63744 7.77427 7.87902 7.97289 8.90496 8.93030 9.60145 10.65064 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.011402 B = 0.003936 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2455.029217 B = 7112.636752 C = 8146.106079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.393 6.393 3 C 0.065 3.935 4 C -0.133 4.133 5 C 0.127 3.873 6 N -0.606 5.606 7 C 0.108 3.892 8 C 0.057 3.943 9 O -0.570 6.570 10 C 0.579 3.421 11 O -0.519 6.519 12 C -0.213 4.213 13 C -0.049 4.049 14 C -0.221 4.221 15 C -0.057 4.057 16 C -0.234 4.234 17 C 0.186 3.814 18 O -0.151 6.151 19 C -0.400 4.400 20 H 0.095 0.905 21 C 0.044 3.956 22 N -0.844 5.844 23 Si 0.942 3.058 24 H -0.266 1.266 25 H -0.274 1.274 26 H -0.275 1.275 27 H 0.083 0.917 28 H 0.039 0.961 29 H 0.041 0.959 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.101 0.899 38 H 0.049 0.951 39 H 0.057 0.943 40 H 0.376 0.624 41 H 0.117 0.883 42 H 0.111 0.889 43 H 0.110 0.890 44 H 0.132 0.868 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.496 -6.812 12.316 14.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.312 6.312 3 C -0.012 4.012 4 C -0.172 4.172 5 C 0.004 3.996 6 N -0.340 5.340 7 C -0.015 4.015 8 C -0.022 4.022 9 O -0.376 6.376 10 C 0.368 3.632 11 O -0.393 6.393 12 C -0.218 4.218 13 C -0.068 4.068 14 C -0.240 4.240 15 C -0.075 4.075 16 C -0.253 4.253 17 C 0.128 3.872 18 O -0.051 6.051 19 C -0.475 4.475 20 H 0.112 0.888 21 C -0.163 4.163 22 N -0.477 5.477 23 Si 0.766 3.234 24 H -0.190 1.190 25 H -0.200 1.200 26 H -0.201 1.201 27 H 0.101 0.899 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.119 0.881 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.223 0.777 41 H 0.135 0.865 42 H 0.129 0.871 43 H 0.129 0.871 44 H 0.149 0.851 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.459 -7.301 11.405 13.976 hybrid contribution 0.772 1.460 -0.181 1.661 sum -2.687 -5.841 11.224 12.935 Atomic orbital electron populations 1.22715 0.81339 1.02471 0.99935 1.87869 1.19466 1.28463 1.95438 1.22459 0.94071 0.84333 1.00327 1.21911 0.92767 0.99060 1.03444 1.21183 0.79636 0.95102 1.03702 1.47652 1.06151 1.74665 1.05531 1.21813 0.98234 0.95624 0.85873 1.22698 0.87569 0.92793 0.99130 1.86425 1.32800 1.27196 1.91129 1.18191 0.87233 0.74898 0.82894 1.90772 1.69673 1.47905 1.30995 1.18747 0.91958 1.01239 1.09810 1.20672 0.94281 0.95718 0.96122 1.20473 0.93474 1.02126 1.07915 1.20881 0.98728 0.93253 0.94683 1.21144 0.93846 1.02697 1.07604 1.19177 0.90389 0.88673 0.88916 1.84012 1.34833 1.29041 1.57261 1.21452 0.90789 0.98687 1.36597 0.88784 1.25355 0.96295 0.97763 0.96885 1.70083 1.08723 1.29188 1.39701 0.85645 0.79251 0.79624 0.78889 1.18984 1.19983 1.20056 0.89864 0.94232 0.94069 0.93276 0.92924 0.90687 0.91434 0.89980 0.89955 0.90288 0.88076 0.93329 0.92486 0.77738 0.86529 0.87112 0.87148 0.85062 0.91869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.42 16 2 O -0.39 -5.32 10.70 -35.23 -0.38 -5.70 16 3 C 0.07 0.84 5.94 37.16 0.22 1.06 16 4 C -0.13 -1.93 5.91 -26.73 -0.16 -2.09 16 5 C 0.13 2.08 5.21 -4.04 -0.02 2.06 16 6 N -0.61 -10.82 2.43 -174.92 -0.42 -11.25 16 7 C 0.11 1.52 5.54 -4.04 -0.02 1.50 16 8 C 0.06 0.81 7.36 37.15 0.27 1.09 16 9 O -0.57 -8.14 12.72 -35.23 -0.45 -8.59 16 10 C 0.58 12.96 6.75 -12.47 -0.08 12.87 16 11 O -0.52 -13.95 16.52 5.10 0.08 -13.86 16 12 C -0.21 -4.55 4.71 -104.81 -0.49 -5.05 16 13 C -0.05 -0.84 7.68 -39.20 -0.30 -1.14 16 14 C -0.22 -3.49 10.02 -39.61 -0.40 -3.88 16 15 C -0.06 -0.97 10.03 -39.54 -0.40 -1.37 16 16 C -0.23 -4.87 9.16 -39.44 -0.36 -5.24 16 17 C 0.19 4.49 6.66 -38.59 -0.26 4.23 16 18 O -0.15 -4.36 9.06 0.63 0.01 -4.36 16 19 C -0.40 -11.07 9.49 30.90 0.29 -10.78 16 20 H 0.09 2.37 5.20 -52.48 -0.27 2.10 16 21 C 0.04 1.19 5.49 -17.51 -0.10 1.10 16 22 N -0.84 -25.00 13.67 55.48 0.76 -24.24 16 23 Si 0.94 20.26 29.55 -169.99 -5.02 15.24 16 24 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 25 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 26 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 27 H 0.08 0.67 8.14 -51.92 -0.42 0.25 16 28 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.55 8.14 -51.92 -0.42 0.13 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.08 1.22 7.33 -51.93 -0.38 0.83 16 35 H 0.08 1.58 7.47 -51.93 -0.39 1.19 16 36 H 0.08 0.93 8.05 -51.93 -0.42 0.52 16 37 H 0.10 1.32 4.26 -51.93 -0.22 1.10 16 38 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 1.01 7.84 -51.92 -0.41 0.60 16 40 H 0.38 3.98 9.12 45.56 0.42 4.39 16 41 H 0.12 1.65 7.06 -52.48 -0.37 1.28 16 42 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 43 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16 44 H 0.13 2.72 5.63 -52.49 -0.30 2.43 16 45 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 378.45 15.07 5.70 5.70 Total: -1.00 -35.51 378.45 -6.11 -41.62 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -5.70 Total: 9.65 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -0.69 Total: -4.21 kcal Atomic # 7 Polarization: -35.83 SS G_CDS: 0.33 Total: -35.49 kcal Atomic # 8 Polarization: -31.77 SS G_CDS: -0.74 Total: -32.50 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.51 -6.11 -41.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189046668.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.710 kcal (2) G-P(sol) polarization free energy of solvation -35.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds