Wall clock time and date at job start Tue Mar 31 2020 14:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36003 * 116.99835 * 2 1 4 4 C 1.38664 * 120.04119 * 0.02562 * 3 2 1 5 5 C 1.38235 * 120.08741 * 179.97438 * 4 3 2 6 6 C 1.50696 * 119.91225 * 179.74192 * 5 4 3 7 7 N 1.46903 * 109.47063 * 89.99782 * 6 5 4 8 8 C 1.47487 * 110.99813 * 74.03085 * 7 6 5 9 9 C 1.53514 * 87.93105 * 138.70347 * 8 7 6 10 10 O 1.42894 * 114.17048 * 87.62653 * 9 8 7 11 11 C 1.50701 * 114.16725 * 220.32749 * 9 8 7 12 12 H 1.08000 * 119.99673 * 93.84108 * 11 9 8 13 13 C 1.37876 * 120.00117 * 273.84198 * 11 9 8 14 14 N 1.31512 * 119.99909 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 119.99940 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47097 * 90.00044 * 15 13 11 17 17 H 1.48504 * 109.46844 * 209.99858 * 15 13 11 18 18 H 1.48502 * 109.47106 * 329.99907 * 15 13 11 19 19 C 1.47480 * 111.00100 * 169.99881 * 7 6 5 20 20 C 1.38235 * 120.17655 * 0.02562 * 5 4 3 21 21 C 1.38667 * 120.09122 * 0.02562 * 20 5 4 22 22 O 1.35992 * 120.04523 * 179.97438 * 21 20 5 23 23 C 1.42901 * 117.00113 * 359.97438 * 22 21 20 24 24 C 1.38970 * 120.04602 * 180.02562 * 3 2 1 25 25 O 1.36101 * 120.08918 * 359.95821 * 24 3 2 26 26 C 1.42900 * 116.99568 * 89.99852 * 25 24 3 27 27 H 1.09006 * 109.46924 * 299.99202 * 1 2 3 28 28 H 1.08996 * 109.47829 * 59.99717 * 1 2 3 29 29 H 1.09003 * 109.47106 * 179.97438 * 1 2 3 30 30 H 1.07999 * 119.96222 * 0.02562 * 4 3 2 31 31 H 1.09000 * 109.47147 * 209.99490 * 6 5 4 32 32 H 1.08999 * 109.47383 * 330.00170 * 6 5 4 33 33 H 1.08998 * 113.47608 * 253.47207 * 8 7 6 34 34 H 1.09004 * 113.47322 * 23.93596 * 8 7 6 35 35 H 0.96699 * 114.00749 * 86.15357 * 10 9 8 36 36 H 0.97002 * 120.00198 * 180.02562 * 14 13 11 37 37 H 1.09002 * 113.47653 * 336.06728 * 19 7 6 38 38 H 1.08998 * 113.47824 * 106.47147 * 19 7 6 39 39 H 1.07998 * 119.95303 * 180.02562 * 20 5 4 40 40 H 1.08996 * 109.47107 * 300.00535 * 23 22 21 41 41 H 1.08995 * 109.46559 * 60.00370 * 23 22 21 42 42 H 1.09004 * 109.47068 * 180.02562 * 23 22 21 43 43 H 1.09001 * 109.47232 * 60.00114 * 26 25 24 44 44 H 1.09002 * 109.47193 * 180.02562 * 26 25 24 45 45 H 1.09003 * 109.47535 * 300.00342 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2920 2.3753 0.0005 5 6 1.9185 3.6075 0.0011 6 6 1.0948 4.8694 -0.0042 7 7 0.8216 5.2816 1.3791 8 6 2.0265 5.8546 2.0076 9 6 1.1231 6.9279 2.6310 10 8 0.5531 6.5553 3.8872 11 6 1.7194 8.3119 2.6317 12 1 1.5004 8.9946 1.8241 13 6 2.5445 8.7065 3.6634 14 7 2.8116 7.8749 4.6466 15 14 3.2831 10.4223 3.6647 16 1 2.3679 11.3546 4.3708 17 1 4.5953 10.3958 4.3594 18 1 3.4731 10.8804 2.2649 19 6 0.2265 6.6304 1.4209 20 6 3.2987 3.6852 0.0005 21 6 4.0603 2.5265 -0.0011 22 8 5.4180 2.6040 -0.0021 23 6 5.9931 3.9122 -0.0020 24 6 3.4341 1.2857 -0.0005 25 8 4.1781 0.1460 -0.0002 26 6 4.5322 -0.3978 -1.2733 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2135 2.3188 0.0014 31 1 1.6435 5.6593 -0.5171 32 1 0.1530 4.6863 -0.5215 33 1 2.4882 5.1953 2.7425 34 1 2.7428 6.2536 1.2893 35 1 1.1199 6.7437 4.6477 36 1 3.3918 8.1526 5.3727 37 1 0.4625 7.2364 0.5462 38 1 -0.8374 6.6285 1.6576 39 1 3.7844 4.6498 0.0014 40 1 5.6682 4.4520 -0.8915 41 1 5.6697 4.4511 0.8884 42 1 7.0801 3.8312 -0.0034 43 1 5.1171 0.3337 -1.8310 44 1 5.1226 -1.3029 -1.1304 45 1 3.6266 -0.6393 -1.8300 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190038021.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:45 Heat of formation + Delta-G solvation = -86.589098 kcal Electronic energy + Delta-G solvation = -28338.144854 eV Core-core repulsion = 24323.869724 eV Total energy + Delta-G solvation = -4014.275130 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.77833 -39.25846 -38.95059 -37.66836 -36.50006 -34.26036 -32.10018 -31.28460 -29.58583 -28.47807 -27.83118 -27.11181 -26.55248 -25.22837 -24.84104 -22.71549 -21.92261 -21.02756 -18.68505 -18.35943 -17.38490 -17.13825 -17.07955 -16.46198 -16.19256 -15.49633 -15.18208 -15.06068 -14.94768 -14.74303 -14.53039 -14.35939 -14.25508 -13.93845 -13.20013 -13.14673 -12.59335 -12.43385 -12.09187 -11.97459 -11.92853 -11.70290 -11.56787 -11.51095 -11.46606 -11.20562 -11.03425 -10.79993 -10.63358 -10.46146 -10.27856 -10.03963 -9.89769 -9.32820 -8.69559 -8.29394 -8.10167 -8.03842 -7.92156 -6.30679 -4.41042 1.25046 1.46459 2.84414 3.16106 3.23989 3.25835 3.51527 3.65566 3.96718 4.21201 4.72732 4.86595 4.94119 5.03880 5.08644 5.10731 5.13879 5.20226 5.21034 5.26284 5.37671 5.40469 5.45375 5.51324 5.55904 5.63329 5.68541 5.75378 5.91235 6.00986 6.12245 6.23635 6.26807 6.33609 6.45816 6.64147 6.68298 7.01484 7.06952 7.10489 7.28201 7.30619 7.72491 7.76343 7.88362 7.97339 8.61253 9.29383 9.65767 10.75230 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.015707 B = 0.003615 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.270914 B = 7744.218545 C = 8895.922908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.306 6.306 3 C 0.146 3.854 4 C -0.214 4.214 5 C 0.012 3.988 6 C 0.051 3.949 7 N -0.463 5.463 8 C -0.017 4.017 9 C 0.248 3.752 10 O -0.570 6.570 11 C -0.536 4.536 12 H 0.066 0.934 13 C 0.072 3.928 14 N -0.896 5.896 15 Si 0.903 3.097 16 H -0.277 1.277 17 H -0.284 1.284 18 H -0.273 1.273 19 C 0.002 3.998 20 C -0.221 4.221 21 C 0.149 3.851 22 O -0.306 6.306 23 C 0.024 3.976 24 C 0.019 3.981 25 O -0.312 6.312 26 C 0.036 3.964 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.099 0.901 30 H 0.135 0.865 31 H 0.049 0.951 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.057 0.943 35 H 0.390 0.610 36 H 0.272 0.728 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.134 0.866 40 H 0.055 0.945 41 H 0.063 0.937 42 H 0.100 0.900 43 H 0.042 0.958 44 H 0.088 0.912 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.427 -11.518 -12.415 16.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.219 6.219 3 C 0.099 3.901 4 C -0.234 4.234 5 C 0.011 3.989 6 C -0.077 4.077 7 N -0.185 5.185 8 C -0.146 4.146 9 C 0.206 3.794 10 O -0.382 6.382 11 C -0.574 4.574 12 H 0.084 0.916 13 C -0.131 4.131 14 N -0.537 5.537 15 Si 0.730 3.270 16 H -0.203 1.203 17 H -0.209 1.209 18 H -0.197 1.197 19 C -0.126 4.126 20 C -0.241 4.241 21 C 0.103 3.897 22 O -0.219 6.219 23 C -0.071 4.071 24 C -0.027 4.027 25 O -0.228 6.228 26 C -0.059 4.059 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.117 0.883 30 H 0.153 0.847 31 H 0.067 0.933 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.246 0.754 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.152 0.848 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.118 0.882 43 H 0.060 0.940 44 H 0.106 0.894 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 0.989 -12.763 -12.191 17.677 hybrid contribution 1.081 2.157 -0.341 2.436 sum 2.069 -10.606 -12.532 16.547 Atomic orbital electron populations 1.23107 0.78270 1.03782 1.01814 1.86109 1.21332 1.26067 1.88413 1.18892 0.90494 0.84861 0.95810 1.20906 1.00185 0.90826 1.11474 1.19385 0.92573 0.94491 0.92420 1.21687 0.98231 0.93459 0.94293 1.69094 1.15908 1.22671 1.10856 1.24671 0.93444 0.98193 0.98319 1.19345 0.87546 0.90547 0.81936 1.86027 1.48813 1.86242 1.17136 1.21573 1.28660 0.99023 1.08187 0.91564 1.25062 0.95228 0.97850 0.94919 1.69298 1.37663 1.35540 1.11187 0.86413 0.78509 0.83662 0.78374 1.20263 1.20925 1.19741 1.24112 1.00646 0.88675 0.99202 1.21032 0.94154 0.97315 1.11597 1.18892 0.82883 0.92522 0.95423 1.86101 1.16683 1.30817 1.88268 1.23142 0.99008 0.82936 1.02029 1.16883 0.86331 0.84519 1.14941 1.86174 1.70156 1.38065 1.28420 1.22936 0.99285 0.98287 0.85397 0.92087 0.92654 0.88293 0.84750 0.93328 0.90378 0.91360 0.92520 0.75385 0.91762 0.91724 0.90917 0.84788 0.92612 0.91851 0.88152 0.93971 0.89356 0.94010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.31 -4.34 10.28 -34.33 -0.35 -4.69 16 3 C 0.15 2.28 6.70 -39.15 -0.26 2.02 16 4 C -0.21 -3.26 8.69 -39.43 -0.34 -3.60 16 5 C 0.01 0.20 5.18 -104.63 -0.54 -0.35 16 6 C 0.05 0.85 4.97 -4.98 -0.02 0.83 16 7 N -0.46 -9.47 6.40 -246.06 -1.58 -11.04 16 8 C -0.02 -0.39 6.25 -7.54 -0.05 -0.43 16 9 C 0.25 6.18 1.57 -91.24 -0.14 6.04 16 10 O -0.57 -15.43 13.54 -35.23 -0.48 -15.91 16 11 C -0.54 -13.97 8.68 -34.44 -0.30 -14.27 16 12 H 0.07 1.68 7.81 -52.49 -0.41 1.27 16 13 C 0.07 1.85 5.40 -17.82 -0.10 1.75 16 14 N -0.90 -23.75 11.02 55.43 0.61 -23.14 16 15 Si 0.90 19.92 29.54 -169.99 -5.02 14.90 16 16 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 17 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 18 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 19 C 0.00 0.05 7.12 -7.54 -0.05 -0.01 16 20 C -0.22 -3.55 8.11 -39.42 -0.32 -3.87 16 21 C 0.15 2.43 6.70 -39.15 -0.26 2.17 16 22 O -0.31 -4.64 10.28 -34.30 -0.35 -5.00 16 23 C 0.02 0.28 9.81 101.05 0.99 1.27 16 24 C 0.02 0.31 5.75 -39.04 -0.22 0.09 16 25 O -0.31 -5.07 9.99 -45.32 -0.45 -5.53 16 26 C 0.04 0.43 11.13 101.05 1.13 1.55 16 27 H 0.06 0.61 7.66 -51.93 -0.40 0.21 16 28 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 29 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.13 1.80 6.29 -52.49 -0.33 1.47 16 31 H 0.05 0.78 7.50 -51.93 -0.39 0.39 16 32 H 0.08 1.14 8.08 -51.93 -0.42 0.72 16 33 H 0.07 1.69 8.14 -51.93 -0.42 1.26 16 34 H 0.06 1.24 7.30 -51.93 -0.38 0.86 16 35 H 0.39 10.76 6.34 45.56 0.29 11.05 16 36 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 37 H 0.06 1.26 7.72 -51.93 -0.40 0.86 16 38 H 0.07 1.53 8.14 -51.93 -0.42 1.10 16 39 H 0.13 2.04 5.94 -52.49 -0.31 1.73 16 40 H 0.06 0.57 7.66 -51.93 -0.40 0.17 16 41 H 0.06 0.79 7.66 -51.93 -0.40 0.39 16 42 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 371.17 15.07 5.59 5.59 Total: -1.00 -30.51 371.17 -7.57 -38.08 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: -6.04 Total: 12.31 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: 0.49 Total: -5.58 kcal Atomic # 7 Polarization: -33.22 SS G_CDS: -0.97 Total: -34.18 kcal Atomic # 8 Polarization: -29.48 SS G_CDS: -1.63 Total: -31.11 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.51 -7.57 -38.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190038021.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.508 kcal (2) G-P(sol) polarization free energy of solvation -30.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds