Wall clock time and date at job start Tue Mar 31 2020 14:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35973 * 117.00008 * 2 1 4 4 C 1.38711 * 119.98445 * 0.02753 * 3 2 1 5 5 C 1.38499 * 119.95270 * 179.97438 * 4 3 2 6 6 O 1.35982 * 120.04796 * 179.97438 * 5 4 3 7 7 C 1.42910 * 116.99982 * 0.02562 * 6 5 4 8 8 C 1.39180 * 119.90562 * 0.02562 * 5 4 3 9 9 O 1.36074 * 120.01214 * 179.97438 * 8 5 4 10 10 C 1.42904 * 116.99661 * 179.97438 * 9 8 5 11 11 C 1.38486 * 119.96554 * 359.72141 * 8 5 4 12 12 C 1.38277 * 120.05073 * 0.55134 * 11 8 5 13 13 C 1.50706 * 119.95395 * 179.72078 * 12 11 8 14 14 N 1.46901 * 109.47172 * 259.73064 * 13 12 11 15 15 C 1.47962 * 110.99645 * 190.00168 * 14 13 12 16 16 C 1.53939 * 86.17954 * 222.41370 * 15 14 13 17 17 O 1.42901 * 113.73443 * 269.25769 * 16 15 14 18 18 C 1.50699 * 113.73181 * 138.07765 * 16 15 14 19 19 H 1.07999 * 120.00015 * 4.91121 * 18 16 15 20 20 C 1.37879 * 119.99686 * 184.90847 * 18 16 15 21 21 N 1.31521 * 119.99972 * 13.82310 * 20 18 16 22 22 Si 1.86792 * 119.99875 * 193.81760 * 20 18 16 23 23 H 1.48504 * 109.47216 * 180.02562 * 22 20 18 24 24 H 1.48504 * 109.47601 * 300.00327 * 22 20 18 25 25 H 1.48506 * 109.47155 * 60.00602 * 22 20 18 26 26 C 1.47957 * 111.00157 * 90.64172 * 14 13 12 27 27 H 1.08998 * 109.46810 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46587 * 299.99498 * 1 2 3 29 29 H 1.09001 * 109.47159 * 59.99752 * 1 2 3 30 30 H 1.08003 * 120.02129 * 359.95331 * 4 3 2 31 31 H 1.08994 * 109.47155 * 59.99218 * 7 6 5 32 32 H 1.08991 * 109.46945 * 179.97438 * 7 6 5 33 33 H 1.09004 * 109.46649 * 299.99485 * 7 6 5 34 34 H 1.08996 * 109.46839 * 179.97438 * 10 9 8 35 35 H 1.08995 * 109.47298 * 299.99830 * 10 9 8 36 36 H 1.09003 * 109.46815 * 59.99791 * 10 9 8 37 37 H 1.07998 * 119.97371 * 180.27362 * 11 8 5 38 38 H 1.09000 * 109.46754 * 139.72400 * 13 12 11 39 39 H 1.09003 * 109.47001 * 19.72791 * 13 12 11 40 40 H 1.08999 * 113.76019 * 108.09949 * 15 14 13 41 41 H 1.09000 * 113.85879 * 336.74722 * 15 14 13 42 42 H 0.96693 * 113.99776 * 171.47023 * 17 16 15 43 43 H 0.97001 * 119.99982 * 5.87544 * 21 20 18 44 44 H 1.08994 * 113.76072 * 23.25977 * 26 14 13 45 45 H 1.09001 * 113.75391 * 251.89917 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2906 2.3747 0.0006 5 6 1.9200 3.6083 0.0011 6 8 1.1810 4.7498 0.0012 7 6 -0.2405 4.6024 0.0012 8 6 3.3101 3.6781 0.0005 9 8 3.9308 4.8891 0.0005 10 6 5.3598 4.8855 0.0005 11 6 4.0611 2.5146 0.0053 12 6 3.4310 1.2837 -0.0010 13 6 4.2504 0.0189 -0.0022 14 7 4.3143 -0.5219 -1.3665 15 6 4.9027 -1.8795 -1.3717 16 6 5.6858 -1.4235 -2.6161 17 8 5.0120 -1.6875 -3.8484 18 6 7.1244 -1.8721 -2.6255 19 1 7.4920 -2.5236 -1.8464 20 6 7.9713 -1.4509 -3.6286 21 7 7.6170 -0.4577 -4.4146 22 14 9.6221 -2.2908 -3.8712 23 1 10.3386 -1.6556 -5.0064 24 1 10.4338 -2.1536 -2.6353 25 1 9.4066 -3.7305 -4.1647 26 6 5.4875 0.0109 -2.0938 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8900 30 1 0.2120 2.3182 0.0003 31 1 -0.5488 4.0537 0.8911 32 1 -0.7078 5.5870 0.0017 33 1 -0.5488 4.0539 -0.8889 34 1 5.7256 5.9123 0.0000 35 1 5.7219 4.3708 0.8904 36 1 5.7218 4.3707 -0.8895 37 1 5.1397 2.5686 0.0093 38 1 3.7876 -0.7144 0.6582 39 1 5.2586 0.2388 0.3490 40 1 4.1803 -2.6705 -1.5730 41 1 5.5338 -2.0897 -0.5083 42 1 5.4352 -1.2892 -4.6212 43 1 6.8000 0.0340 -4.2365 44 1 6.2895 0.3554 -1.4410 45 1 5.2322 0.7303 -2.8718 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191914933.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:48 Heat of formation + Delta-G solvation = -88.773455 kcal Electronic energy + Delta-G solvation = -28398.258425 eV Core-core repulsion = 24383.888575 eV Total energy + Delta-G solvation = -4014.369851 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.81904 -39.23176 -38.82387 -38.39381 -36.07986 -34.53371 -32.18935 -31.50266 -29.69947 -28.45100 -27.87827 -27.27496 -26.19573 -25.31135 -24.78858 -22.64909 -21.88482 -20.96536 -18.85573 -18.73679 -17.83202 -17.38152 -17.21165 -16.20655 -16.07736 -15.54067 -15.27985 -15.18952 -14.85952 -14.74498 -14.60245 -14.48459 -14.17786 -13.79754 -13.29377 -13.15354 -12.69394 -12.65666 -12.23531 -12.14708 -11.95762 -11.71595 -11.56994 -11.54505 -11.34639 -11.21031 -11.15869 -10.89456 -10.65627 -10.49981 -10.23308 -10.15604 -10.02911 -9.10877 -8.70862 -8.62818 -8.30241 -7.73143 -7.36832 -6.53458 -4.31325 1.26721 1.55133 3.16989 3.28801 3.35553 3.39804 3.44136 3.57742 3.70729 4.40415 4.66891 4.78705 4.82784 4.91986 4.97126 4.97521 5.06786 5.09798 5.14178 5.22078 5.23239 5.28494 5.29835 5.42200 5.48311 5.54366 5.56910 5.72142 5.81898 6.00446 6.05893 6.13853 6.16514 6.30008 6.44165 6.58366 6.63731 6.77898 6.99755 7.13160 7.14383 7.36615 7.64659 7.86588 7.91770 8.22610 8.60872 9.09673 9.39294 10.77849 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.015490 B = 0.003626 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.214762 B = 7719.962738 C = 8900.203316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.297 6.297 3 C 0.151 3.849 4 C -0.264 4.264 5 C 0.129 3.871 6 O -0.305 6.305 7 C 0.027 3.973 8 C 0.062 3.938 9 O -0.310 6.310 10 C 0.026 3.974 11 C -0.125 4.125 12 C -0.089 4.089 13 C 0.069 3.931 14 N -0.464 5.464 15 C 0.021 3.979 16 C 0.222 3.778 17 O -0.565 6.565 18 C -0.619 4.619 19 H 0.058 0.942 20 C 0.035 3.965 21 N -0.901 5.901 22 Si 1.064 2.936 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.285 1.285 26 C -0.020 4.020 27 H 0.098 0.902 28 H 0.049 0.951 29 H 0.052 0.948 30 H 0.138 0.862 31 H 0.052 0.948 32 H 0.099 0.901 33 H 0.053 0.947 34 H 0.097 0.903 35 H 0.052 0.948 36 H 0.057 0.943 37 H 0.140 0.860 38 H 0.077 0.923 39 H 0.046 0.954 40 H 0.076 0.924 41 H 0.066 0.934 42 H 0.370 0.630 43 H 0.270 0.730 44 H 0.063 0.937 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.430 8.514 11.009 18.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.209 6.209 3 C 0.105 3.895 4 C -0.283 4.283 5 C 0.083 3.917 6 O -0.218 6.218 7 C -0.068 4.068 8 C 0.017 3.983 9 O -0.224 6.224 10 C -0.069 4.069 11 C -0.145 4.145 12 C -0.091 4.091 13 C -0.060 4.060 14 N -0.187 5.187 15 C -0.107 4.107 16 C 0.182 3.818 17 O -0.371 6.371 18 C -0.657 4.657 19 H 0.076 0.924 20 C -0.170 4.170 21 N -0.538 5.538 22 Si 0.891 3.109 23 H -0.206 1.206 24 H -0.213 1.213 25 H -0.211 1.211 26 C -0.150 4.150 27 H 0.117 0.883 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.156 0.844 31 H 0.070 0.930 32 H 0.117 0.883 33 H 0.072 0.928 34 H 0.116 0.884 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.157 0.843 38 H 0.095 0.905 39 H 0.064 0.936 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.218 0.782 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.127 8.449 10.195 17.955 hybrid contribution -0.483 0.201 1.126 1.242 sum -12.610 8.650 11.321 19.027 Atomic orbital electron populations 1.23013 0.79302 1.03796 1.00653 1.86215 1.20387 1.26031 1.88302 1.18350 0.91288 0.83637 0.96246 1.21003 1.00224 0.91057 1.16019 1.17844 0.88063 0.85238 1.00515 1.86167 1.18454 1.28231 1.88987 1.23032 0.79076 1.03641 1.01072 1.17995 0.88823 0.85211 1.06249 1.86127 1.20765 1.25731 1.89809 1.23046 0.78707 1.03695 1.01478 1.20823 0.99978 0.90125 1.03537 1.18852 0.90514 0.94936 1.04776 1.21382 0.97073 0.93435 0.94077 1.68576 1.36109 1.03653 1.10351 1.23958 0.96618 0.92232 0.97933 1.20026 0.90442 0.89200 0.82167 1.86236 1.55502 1.78196 1.17180 1.22361 0.94415 1.34197 1.14756 0.92360 1.25898 1.03701 0.95099 0.92335 1.70886 1.26044 1.17795 1.39075 0.83644 0.74858 0.75989 0.76434 1.20620 1.21345 1.21130 1.24892 0.90401 1.01429 0.98265 0.88322 0.93278 0.92941 0.84417 0.92962 0.88303 0.92818 0.88414 0.92892 0.92477 0.84268 0.90483 0.93595 0.90587 0.91548 0.78174 0.91764 0.91925 0.91532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 16 2 O -0.30 -4.56 9.72 -19.65 -0.19 -4.75 16 3 C 0.15 2.41 6.66 -39.25 -0.26 2.15 16 4 C -0.26 -3.67 8.02 -39.31 -0.32 -3.98 16 5 C 0.13 1.95 6.70 -39.14 -0.26 1.69 16 6 O -0.31 -4.22 10.28 -34.25 -0.35 -4.58 16 7 C 0.03 0.24 9.81 101.05 0.99 1.23 16 8 C 0.06 0.99 6.70 -39.14 -0.26 0.72 16 9 O -0.31 -4.69 10.28 -34.54 -0.36 -5.04 16 10 C 0.03 0.30 9.81 101.05 0.99 1.29 16 11 C -0.13 -1.99 8.65 -39.48 -0.34 -2.33 16 12 C -0.09 -1.52 5.45 -104.45 -0.57 -2.09 16 13 C 0.07 1.23 4.58 -4.97 -0.02 1.21 16 14 N -0.46 -9.88 6.14 -239.68 -1.47 -11.35 16 15 C 0.02 0.47 7.33 -2.76 -0.02 0.45 16 16 C 0.22 5.63 1.08 -90.83 -0.10 5.54 16 17 O -0.56 -15.03 13.45 -35.23 -0.47 -15.50 16 18 C -0.62 -16.81 8.56 -34.44 -0.29 -17.10 16 19 H 0.06 1.57 7.85 -52.49 -0.41 1.16 16 20 C 0.04 0.95 5.26 -17.82 -0.09 0.86 16 21 N -0.90 -25.25 12.80 55.43 0.71 -24.54 16 22 Si 1.06 23.96 29.93 -169.99 -5.09 18.88 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 26 C -0.02 -0.47 6.39 -2.77 -0.02 -0.49 16 27 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 29 H 0.05 0.50 7.66 -51.93 -0.40 0.11 16 30 H 0.14 1.50 4.53 -52.48 -0.24 1.26 16 31 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 32 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.43 7.66 -51.93 -0.40 0.04 16 34 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.05 0.54 7.65 -51.93 -0.40 0.14 16 36 H 0.06 0.66 7.67 -51.93 -0.40 0.27 16 37 H 0.14 2.03 6.26 -52.49 -0.33 1.70 16 38 H 0.08 1.33 7.78 -51.93 -0.40 0.92 16 39 H 0.05 0.80 7.23 -51.93 -0.38 0.43 16 40 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 41 H 0.07 1.39 7.88 -51.93 -0.41 0.98 16 42 H 0.37 9.71 6.95 45.56 0.32 10.03 16 43 H 0.27 7.50 5.52 -40.82 -0.23 7.27 16 44 H 0.06 1.44 7.43 -51.93 -0.39 1.05 16 45 H 0.07 1.60 7.79 -51.93 -0.40 1.19 16 LS Contribution 366.52 15.07 5.52 5.52 Total: -1.00 -32.62 366.52 -7.02 -39.64 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -5.74 Total: 11.31 kcal Atomic # 6 Polarization: -10.00 SS G_CDS: 0.41 Total: -9.58 kcal Atomic # 7 Polarization: -35.13 SS G_CDS: -0.76 Total: -35.89 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: -1.37 Total: -29.87 kcal Atomic # 14 Polarization: 23.96 SS G_CDS: -5.09 Total: 18.88 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.62 -7.02 -39.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191914933.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.129 kcal (2) G-P(sol) polarization free energy of solvation -32.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds