Wall clock time and date at job start Tue Mar 31 2020 14:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00071 * 2 1 4 4 O 1.42903 * 109.46985 * 74.99542 * 3 2 1 5 5 C 1.35980 * 116.99706 * 75.00625 * 4 3 2 6 6 C 1.38719 * 120.00606 * 359.97438 * 5 4 3 7 7 C 1.38111 * 120.00258 * 180.02562 * 6 5 4 8 8 C 1.38717 * 119.99637 * 0.02562 * 7 6 5 9 9 O 1.35986 * 119.98990 * 179.97438 * 8 7 6 10 10 C 1.42893 * 117.00828 * 359.97438 * 9 8 7 11 11 C 1.38667 * 120.00386 * 359.97438 * 8 7 6 12 12 C 1.38148 * 120.00336 * 359.76951 * 11 8 7 13 13 C 1.50699 * 120.00568 * 180.25125 * 12 11 8 14 14 N 1.46904 * 109.47079 * 260.25518 * 13 12 11 15 15 C 1.47482 * 110.99872 * 74.02816 * 14 13 12 16 16 C 1.53514 * 87.93107 * 138.70470 * 15 14 13 17 17 O 1.42893 * 114.17065 * 87.62243 * 16 15 14 18 18 C 1.50700 * 114.33793 * 220.31758 * 16 15 14 19 19 H 1.08004 * 120.00354 * 93.92622 * 18 16 15 20 20 C 1.37879 * 119.99729 * 273.91979 * 18 16 15 21 21 N 1.31514 * 120.00086 * 0.02562 * 20 18 16 22 22 Si 1.86803 * 119.99849 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46823 * 60.00203 * 22 20 18 24 24 H 1.48495 * 109.47152 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47396 * 300.00245 * 22 20 18 26 26 C 1.47477 * 110.99643 * 169.99775 * 14 13 12 27 27 H 1.08996 * 109.46857 * 60.00618 * 1 2 3 28 28 H 1.09004 * 109.46938 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46957 * 300.00055 * 1 2 3 30 30 H 1.09002 * 109.47259 * 194.99860 * 3 2 1 31 31 H 1.09001 * 109.47074 * 314.99881 * 3 2 1 32 32 H 1.08005 * 119.99570 * 0.02831 * 6 5 4 33 33 H 1.08003 * 119.99653 * 180.02562 * 7 6 5 34 34 H 1.09000 * 109.47817 * 179.97438 * 10 9 8 35 35 H 1.08997 * 109.47383 * 300.00477 * 10 9 8 36 36 H 1.09006 * 109.46789 * 60.00496 * 10 9 8 37 37 H 1.08004 * 120.00105 * 180.02562 * 11 8 7 38 38 H 1.08998 * 109.46954 * 20.25613 * 13 12 11 39 39 H 1.08995 * 109.47397 * 140.25792 * 13 12 11 40 40 H 1.08999 * 113.47648 * 253.46874 * 15 14 13 41 41 H 1.09003 * 113.47439 * 23.93309 * 15 14 13 42 42 H 0.96703 * 113.99993 * 86.16372 * 17 16 15 43 43 H 0.97004 * 119.99981 * 179.97438 * 21 20 18 44 44 H 1.08999 * 113.48052 * 336.06457 * 26 14 13 45 45 H 1.08998 * 113.47594 * 106.53372 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 8 1.8853 1.8824 1.3014 5 6 2.7192 1.4129 2.2674 6 6 3.6374 0.4173 1.9675 7 6 4.4839 -0.0600 2.9488 8 6 4.4155 0.4560 4.2347 9 8 5.2487 -0.0144 5.2010 10 6 6.1685 -1.0401 4.8218 11 6 3.4977 1.4512 4.5346 12 6 2.6546 1.9324 3.5517 13 6 1.6610 3.0180 3.8762 14 7 0.3361 2.4209 4.0910 15 6 0.2743 1.7248 5.3898 16 6 -1.1317 2.3126 5.5750 17 8 -2.1772 1.5168 5.0134 18 6 -1.4286 2.7830 6.9756 19 1 -1.2678 3.8168 7.2436 20 6 -1.9057 1.8935 7.9149 21 7 -2.1012 0.6345 7.5887 22 14 -2.2744 2.4766 9.6508 23 1 -3.3094 3.5407 9.6062 24 1 -2.7726 1.3361 10.4608 25 1 -1.0352 3.0169 10.2653 26 6 -0.6075 3.4121 4.6406 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 3.0649 1.2336 -0.2660 31 1 1.4942 1.9329 -0.7267 32 1 3.6902 0.0153 0.9664 33 1 5.1990 -0.8348 2.7151 34 1 6.7724 -1.3236 5.6838 35 1 5.6165 -1.9087 4.4629 36 1 6.8189 -0.6700 4.0292 37 1 3.4449 1.8532 5.5356 38 1 1.9753 3.5397 4.7801 39 1 1.6111 3.7244 3.0477 40 1 0.2825 0.6384 5.3010 41 1 0.9987 2.0945 6.1154 42 1 -2.5056 0.8251 5.6041 43 1 -2.4365 0.0086 8.2496 44 1 -0.1185 4.2322 5.1664 45 1 -1.3467 3.7558 3.9171 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191917052.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:28 Heat of formation + Delta-G solvation = -98.176609 kcal Electronic energy + Delta-G solvation = -28418.288120 eV Core-core repulsion = 24403.510518 eV Total energy + Delta-G solvation = -4014.777602 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.50824 -39.14755 -39.01061 -37.28435 -35.77814 -34.30939 -32.05500 -31.77396 -29.80394 -28.03611 -27.47617 -27.08521 -25.60714 -25.16091 -24.73128 -22.68056 -21.94414 -20.69508 -18.54443 -18.12198 -17.59223 -17.09856 -16.95465 -16.80788 -15.66809 -15.62781 -15.08442 -15.06009 -14.89758 -14.43130 -14.24916 -14.05574 -13.73033 -13.50795 -13.35106 -13.16035 -12.61302 -12.42497 -12.18834 -12.11052 -11.90245 -11.61510 -11.48854 -11.36472 -11.20689 -11.03735 -10.84389 -10.66845 -10.50961 -10.41053 -10.20778 -10.01283 -9.92090 -9.28313 -8.74261 -8.54427 -8.08310 -7.78438 -7.53696 -6.21575 -4.31291 1.41580 1.65967 3.24358 3.29607 3.30909 3.32000 3.44465 3.67844 3.93162 4.29384 4.80232 4.84453 4.93224 4.99276 5.01737 5.09396 5.12599 5.14260 5.25092 5.37361 5.39783 5.46547 5.58058 5.63667 5.74887 5.91845 5.96300 6.00737 6.06692 6.16062 6.30005 6.40160 6.42139 6.47830 6.54807 6.77639 6.81573 6.85916 7.16368 7.26856 7.41657 7.42640 7.65009 7.82051 8.02402 8.12660 8.70469 9.38575 9.74947 10.84306 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.011152 B = 0.004215 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.096996 B = 6641.459219 C = 8242.834745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.398 6.398 3 C 0.212 3.788 4 O -0.313 6.313 5 C 0.115 3.885 6 C -0.162 4.162 7 C -0.176 4.176 8 C 0.090 3.910 9 O -0.318 6.318 10 C 0.030 3.970 11 C -0.107 4.107 12 C -0.057 4.057 13 C 0.065 3.935 14 N -0.457 5.457 15 C -0.017 4.017 16 C 0.248 3.752 17 O -0.570 6.570 18 C -0.534 4.534 19 H 0.065 0.935 20 C 0.071 3.929 21 N -0.898 5.898 22 Si 0.903 3.097 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.275 1.275 26 C 0.003 3.997 27 H 0.040 0.960 28 H 0.084 0.916 29 H 0.063 0.937 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.131 0.869 33 H 0.126 0.874 34 H 0.096 0.904 35 H 0.053 0.947 36 H 0.051 0.949 37 H 0.135 0.865 38 H 0.044 0.956 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.057 0.943 42 H 0.389 0.611 43 H 0.271 0.729 44 H 0.063 0.937 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.323 -1.357 -12.039 18.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.318 6.318 3 C 0.098 3.902 4 O -0.229 6.229 5 C 0.071 3.929 6 C -0.181 4.181 7 C -0.195 4.195 8 C 0.046 3.954 9 O -0.233 6.233 10 C -0.065 4.065 11 C -0.126 4.126 12 C -0.058 4.058 13 C -0.063 4.063 14 N -0.179 5.179 15 C -0.146 4.146 16 C 0.206 3.794 17 O -0.383 6.383 18 C -0.573 4.573 19 H 0.083 0.917 20 C -0.130 4.130 21 N -0.539 5.539 22 Si 0.730 3.270 23 H -0.200 1.200 24 H -0.210 1.210 25 H -0.200 1.200 26 C -0.126 4.126 27 H 0.059 0.941 28 H 0.103 0.897 29 H 0.081 0.919 30 H 0.112 0.888 31 H 0.118 0.882 32 H 0.149 0.851 33 H 0.143 0.857 34 H 0.114 0.886 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.152 0.848 38 H 0.062 0.938 39 H 0.097 0.903 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.245 0.755 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 13.193 -1.455 -12.909 18.515 hybrid contribution 0.231 0.055 1.760 1.776 sum 13.424 -1.401 -11.150 17.506 Atomic orbital electron populations 1.22850 0.79635 1.03031 1.01166 1.87988 1.21586 1.28490 1.93751 1.24094 0.99014 0.83610 0.83483 1.86343 1.57307 1.59826 1.19397 1.18522 0.90837 0.94781 0.88810 1.20977 0.97774 0.99089 1.00250 1.20909 1.02878 1.03196 0.92543 1.18800 0.92962 0.95976 0.87676 1.86080 1.47727 1.53654 1.35789 1.22977 0.91822 0.89780 1.01966 1.20165 0.95471 0.97297 0.99670 1.18959 0.97418 0.99379 0.90025 1.21454 0.90590 0.93780 1.00513 1.69078 1.03853 1.15528 1.29457 1.24636 1.01900 0.99735 0.88323 1.19352 0.83772 0.86831 0.89452 1.86020 1.54209 1.51042 1.46991 1.21552 1.44569 0.96357 0.94778 0.91658 1.25053 0.94034 0.94575 0.99383 1.69295 1.45829 1.03043 1.35694 0.86474 0.78858 0.78357 0.83274 1.19970 1.21035 1.20045 1.24078 0.95399 0.95745 0.97356 0.94118 0.89706 0.91853 0.88809 0.88214 0.85119 0.85652 0.88564 0.92862 0.93065 0.84750 0.93753 0.90301 0.91647 0.92519 0.75524 0.91822 0.91905 0.91161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.89 101.05 1.10 1.47 16 2 O -0.40 -5.36 10.18 -59.04 -0.60 -5.96 16 3 C 0.21 2.46 6.39 101.05 0.65 3.11 16 4 O -0.31 -4.89 9.42 -43.49 -0.41 -5.30 16 5 C 0.12 1.89 6.60 -39.24 -0.26 1.63 16 6 C -0.16 -2.32 8.78 -39.45 -0.35 -2.67 16 7 C -0.18 -2.43 9.03 -39.45 -0.36 -2.79 16 8 C 0.09 1.40 6.69 -39.25 -0.26 1.14 16 9 O -0.32 -4.60 10.50 -19.70 -0.21 -4.81 16 10 C 0.03 0.29 9.81 101.05 0.99 1.28 16 11 C -0.11 -1.81 9.49 -39.46 -0.37 -2.18 16 12 C -0.06 -0.99 5.06 -104.49 -0.53 -1.52 16 13 C 0.06 1.19 4.62 -4.97 -0.02 1.16 16 14 N -0.46 -9.94 6.40 -246.08 -1.58 -11.52 16 15 C -0.02 -0.40 6.63 -7.54 -0.05 -0.45 16 16 C 0.25 6.42 1.56 -91.24 -0.14 6.28 16 17 O -0.57 -15.84 13.53 -35.23 -0.48 -16.32 16 18 C -0.53 -14.45 8.69 -34.44 -0.30 -14.75 16 19 H 0.07 1.72 7.81 -52.48 -0.41 1.31 16 20 C 0.07 1.91 5.39 -17.82 -0.10 1.81 16 21 N -0.90 -24.55 11.02 55.43 0.61 -23.94 16 22 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 23 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 C 0.00 0.07 7.12 -7.54 -0.05 0.01 16 27 H 0.04 0.41 8.11 -51.93 -0.42 -0.01 16 28 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.06 0.97 8.03 -51.93 -0.42 0.55 16 30 H 0.09 0.88 6.70 -51.93 -0.35 0.53 16 31 H 0.10 0.91 8.01 -51.93 -0.42 0.49 16 32 H 0.13 1.62 5.85 -52.48 -0.31 1.31 16 33 H 0.13 1.37 6.29 -52.48 -0.33 1.04 16 34 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 36 H 0.05 0.41 7.66 -51.93 -0.40 0.02 16 37 H 0.13 2.24 8.04 -52.48 -0.42 1.82 16 38 H 0.04 0.78 7.43 -51.93 -0.39 0.40 16 39 H 0.08 1.36 7.85 -51.93 -0.41 0.95 16 40 H 0.06 1.70 8.14 -51.93 -0.42 1.28 16 41 H 0.06 1.34 7.66 -51.93 -0.40 0.94 16 42 H 0.39 10.99 6.33 45.56 0.29 11.28 16 43 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 44 H 0.06 1.31 7.73 -51.93 -0.40 0.91 16 45 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 LS Contribution 370.72 15.07 5.59 5.59 Total: -1.00 -31.08 370.72 -8.15 -39.22 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: -6.00 Total: 13.91 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: -0.06 Total: -6.47 kcal Atomic # 7 Polarization: -34.50 SS G_CDS: -0.97 Total: -35.46 kcal Atomic # 8 Polarization: -30.69 SS G_CDS: -1.69 Total: -32.39 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.08 -8.15 -39.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191917052.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.955 kcal (2) G-P(sol) polarization free energy of solvation -31.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds