Wall clock time and date at job start Tue Mar 31 2020 14:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00071 * 2 1 4 4 O 1.42903 * 109.46985 * 74.99542 * 3 2 1 5 5 C 1.35980 * 116.99706 * 75.00625 * 4 3 2 6 6 C 1.38719 * 120.00606 * 359.97438 * 5 4 3 7 7 C 1.38111 * 120.00258 * 180.02562 * 6 5 4 8 8 C 1.38717 * 119.99637 * 0.02562 * 7 6 5 9 9 O 1.35986 * 119.98990 * 179.97438 * 8 7 6 10 10 C 1.42893 * 117.00828 * 359.97438 * 9 8 7 11 11 C 1.38667 * 120.00386 * 359.97438 * 8 7 6 12 12 C 1.38148 * 120.00336 * 359.76951 * 11 8 7 13 13 C 1.50699 * 120.00568 * 180.25125 * 12 11 8 14 14 N 1.46904 * 109.47079 * 260.25518 * 13 12 11 15 15 C 1.47482 * 110.99872 * 74.02816 * 14 13 12 16 16 C 1.53514 * 87.93107 * 138.70470 * 15 14 13 17 17 O 1.42893 * 114.17065 * 87.62243 * 16 15 14 18 18 C 1.50700 * 114.33793 * 220.31758 * 16 15 14 19 19 H 1.08004 * 120.00354 * 93.92622 * 18 16 15 20 20 C 1.37879 * 119.99729 * 273.91979 * 18 16 15 21 21 N 1.31514 * 120.00086 * 0.02562 * 20 18 16 22 22 Si 1.86803 * 119.99849 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46823 * 60.00203 * 22 20 18 24 24 H 1.48495 * 109.47152 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47396 * 300.00245 * 22 20 18 26 26 C 1.47477 * 110.99643 * 169.99775 * 14 13 12 27 27 H 1.08996 * 109.46857 * 60.00618 * 1 2 3 28 28 H 1.09004 * 109.46938 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46957 * 300.00055 * 1 2 3 30 30 H 1.09002 * 109.47259 * 194.99860 * 3 2 1 31 31 H 1.09001 * 109.47074 * 314.99881 * 3 2 1 32 32 H 1.08005 * 119.99570 * 0.02831 * 6 5 4 33 33 H 1.08003 * 119.99653 * 180.02562 * 7 6 5 34 34 H 1.09000 * 109.47817 * 179.97438 * 10 9 8 35 35 H 1.08997 * 109.47383 * 300.00477 * 10 9 8 36 36 H 1.09006 * 109.46789 * 60.00496 * 10 9 8 37 37 H 1.08004 * 120.00105 * 180.02562 * 11 8 7 38 38 H 1.08998 * 109.46954 * 20.25613 * 13 12 11 39 39 H 1.08995 * 109.47397 * 140.25792 * 13 12 11 40 40 H 1.08999 * 113.47648 * 253.46874 * 15 14 13 41 41 H 1.09003 * 113.47439 * 23.93309 * 15 14 13 42 42 H 0.96703 * 113.99993 * 86.16372 * 17 16 15 43 43 H 0.97004 * 119.99981 * 179.97438 * 21 20 18 44 44 H 1.08999 * 113.48052 * 336.06457 * 26 14 13 45 45 H 1.08998 * 113.47594 * 106.53372 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 8 1.8853 1.8824 1.3014 5 6 2.7192 1.4129 2.2674 6 6 3.6374 0.4173 1.9675 7 6 4.4839 -0.0600 2.9488 8 6 4.4155 0.4560 4.2347 9 8 5.2487 -0.0144 5.2010 10 6 6.1685 -1.0401 4.8218 11 6 3.4977 1.4512 4.5346 12 6 2.6546 1.9324 3.5517 13 6 1.6610 3.0180 3.8762 14 7 0.3361 2.4209 4.0910 15 6 0.2743 1.7248 5.3898 16 6 -1.1317 2.3126 5.5750 17 8 -2.1772 1.5168 5.0134 18 6 -1.4286 2.7830 6.9756 19 1 -1.2678 3.8168 7.2436 20 6 -1.9057 1.8935 7.9149 21 7 -2.1012 0.6345 7.5887 22 14 -2.2744 2.4766 9.6508 23 1 -3.3094 3.5407 9.6062 24 1 -2.7726 1.3361 10.4608 25 1 -1.0352 3.0169 10.2653 26 6 -0.6075 3.4121 4.6406 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 3.0649 1.2336 -0.2660 31 1 1.4942 1.9329 -0.7267 32 1 3.6902 0.0153 0.9664 33 1 5.1990 -0.8348 2.7151 34 1 6.7724 -1.3236 5.6838 35 1 5.6165 -1.9087 4.4629 36 1 6.8189 -0.6700 4.0292 37 1 3.4449 1.8532 5.5356 38 1 1.9753 3.5397 4.7801 39 1 1.6111 3.7244 3.0477 40 1 0.2825 0.6384 5.3010 41 1 0.9987 2.0945 6.1154 42 1 -2.5056 0.8251 5.6041 43 1 -2.4365 0.0086 8.2496 44 1 -0.1185 4.2322 5.1664 45 1 -1.3467 3.7558 3.9171 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191917052.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:27 Heat of formation + Delta-G solvation = -122.411907 kcal Electronic energy + Delta-G solvation = -28419.339042 eV Core-core repulsion = 24403.510518 eV Total energy + Delta-G solvation = -4015.828523 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.71143 -40.74184 -40.18204 -38.37800 -36.92507 -36.20121 -34.09726 -33.20659 -30.96439 -29.57269 -28.55406 -28.01383 -27.35441 -26.62741 -26.12015 -24.29310 -23.10336 -21.98495 -20.47765 -19.38827 -19.11566 -18.54635 -18.03548 -17.80477 -17.10291 -16.80295 -16.67325 -16.54662 -16.10662 -15.97268 -15.72023 -15.57449 -15.13176 -14.72756 -14.69134 -14.37552 -13.96576 -13.84565 -13.61071 -13.53895 -13.34247 -13.15268 -12.96479 -12.75394 -12.56289 -12.50867 -12.36271 -12.20321 -12.12001 -11.89032 -11.56682 -11.49070 -11.16299 -11.06078 -10.64724 -10.10878 -9.92377 -9.59860 -8.69406 -8.24208 -6.42422 0.21992 0.48177 1.43541 1.44663 1.53170 2.30770 2.37734 2.45034 2.62597 2.87503 2.96554 3.36940 3.67122 3.76727 4.00718 4.03436 4.10989 4.16036 4.24954 4.26659 4.33439 4.40304 4.41657 4.46259 4.48693 4.52312 4.59315 4.63891 4.67600 4.74139 4.85936 4.90198 4.91908 5.11681 5.15788 5.24408 5.31660 5.39560 5.46735 5.65582 5.75911 5.88058 5.97406 6.33591 6.38842 6.57442 6.63517 7.30687 7.56333 8.80896 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.011152 B = 0.004215 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.096996 B = 6641.459219 C = 8242.834745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.411 6.411 3 C 0.201 3.799 4 O -0.333 6.333 5 C 0.105 3.895 6 C -0.159 4.159 7 C -0.167 4.167 8 C 0.083 3.917 9 O -0.340 6.340 10 C 0.019 3.981 11 C -0.126 4.126 12 C -0.082 4.082 13 C 0.070 3.930 14 N -0.460 5.460 15 C 0.001 3.999 16 C 0.221 3.779 17 O -0.583 6.583 18 C -0.557 4.557 19 H 0.068 0.932 20 C 0.026 3.974 21 N -0.921 5.921 22 Si 0.969 3.031 23 H -0.270 1.270 24 H -0.281 1.281 25 H -0.269 1.269 26 C 0.013 3.987 27 H 0.067 0.933 28 H 0.092 0.908 29 H 0.026 0.974 30 H 0.121 0.879 31 H 0.126 0.874 32 H 0.154 0.846 33 H 0.159 0.841 34 H 0.117 0.883 35 H 0.060 0.940 36 H 0.070 0.930 37 H 0.124 0.876 38 H 0.047 0.953 39 H 0.090 0.910 40 H 0.036 0.964 41 H 0.055 0.945 42 H 0.383 0.617 43 H 0.274 0.726 44 H 0.079 0.921 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.857 -1.474 -12.905 19.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.331 6.331 3 C 0.088 3.912 4 O -0.249 6.249 5 C 0.059 3.941 6 C -0.177 4.177 7 C -0.186 4.186 8 C 0.038 3.962 9 O -0.254 6.254 10 C -0.075 4.075 11 C -0.146 4.146 12 C -0.083 4.083 13 C -0.058 4.058 14 N -0.182 5.182 15 C -0.128 4.128 16 C 0.180 3.820 17 O -0.395 6.395 18 C -0.595 4.595 19 H 0.086 0.914 20 C -0.173 4.173 21 N -0.563 5.563 22 Si 0.794 3.206 23 H -0.195 1.195 24 H -0.206 1.206 25 H -0.194 1.194 26 C -0.116 4.116 27 H 0.086 0.914 28 H 0.111 0.889 29 H 0.045 0.955 30 H 0.138 0.862 31 H 0.144 0.856 32 H 0.172 0.828 33 H 0.176 0.824 34 H 0.135 0.865 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.142 0.858 38 H 0.066 0.934 39 H 0.108 0.892 40 H 0.054 0.946 41 H 0.074 0.926 42 H 0.237 0.763 43 H 0.084 0.916 44 H 0.097 0.903 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 14.742 -1.566 -13.796 20.251 hybrid contribution -0.166 0.028 1.946 1.953 sum 14.575 -1.538 -11.850 18.848 Atomic orbital electron populations 1.22844 0.79558 1.03472 1.00637 1.87961 1.21788 1.29653 1.93663 1.24606 1.00919 0.83413 0.82215 1.86320 1.57453 1.60488 1.20683 1.18678 0.91434 0.95254 0.88698 1.21257 0.96868 0.98159 1.01437 1.21273 1.02774 1.03067 0.91501 1.18894 0.92905 0.95726 0.88651 1.86056 1.48271 1.54900 1.36219 1.23329 0.91504 0.88905 1.03806 1.20196 0.96612 0.98477 0.99267 1.18923 0.98021 1.00186 0.91134 1.21416 0.88980 0.94402 1.00985 1.68983 1.05940 1.15456 1.27793 1.24312 1.00966 0.97917 0.89648 1.19725 0.83914 0.88165 0.90233 1.86002 1.55083 1.51145 1.47224 1.21828 1.45373 0.96693 0.95653 0.91399 1.25846 0.93651 0.94592 1.03227 1.69384 1.46038 1.03946 1.36882 0.85440 0.78786 0.77949 0.78456 1.19453 1.20574 1.19422 1.23988 0.95502 0.95354 0.96719 0.91433 0.88920 0.95491 0.86160 0.85632 0.82814 0.82354 0.86511 0.92145 0.91139 0.85799 0.93447 0.89208 0.94564 0.92641 0.76286 0.91609 0.90309 0.91035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 10.89 113.37 1.23 1.98 16 2 O -0.41 -10.32 10.18 -126.21 -1.29 -11.61 16 3 C 0.20 4.24 6.39 113.37 0.72 4.96 16 4 O -0.33 -10.11 9.42 -70.55 -0.66 -10.78 16 5 C 0.10 3.34 6.60 22.49 0.15 3.49 16 6 C -0.16 -4.22 8.78 22.35 0.20 -4.03 16 7 C -0.17 -4.25 9.03 22.35 0.20 -4.05 16 8 C 0.08 2.51 6.69 22.49 0.15 2.66 16 9 O -0.34 -9.48 10.50 -93.39 -0.98 -10.46 16 10 C 0.02 0.32 9.81 113.37 1.11 1.43 16 11 C -0.13 -4.35 9.49 22.35 0.21 -4.13 16 12 C -0.08 -2.88 5.06 -19.78 -0.10 -2.98 16 13 C 0.07 2.59 4.62 85.56 0.39 2.98 16 14 N -0.46 -20.38 6.40 -932.83 -5.97 -26.35 16 15 C 0.00 0.07 6.63 83.57 0.55 0.62 16 16 C 0.22 11.74 1.56 -11.19 -0.02 11.72 16 17 O -0.58 -33.45 13.53 -148.98 -2.02 -35.47 16 18 C -0.56 -30.54 8.69 25.60 0.22 -30.32 16 19 H 0.07 3.58 7.81 -2.91 -0.02 3.56 16 20 C 0.03 1.42 5.39 84.66 0.46 1.87 16 21 N -0.92 -51.33 11.02 21.45 0.24 -51.09 16 22 Si 0.97 42.32 29.54 68.60 2.03 44.34 16 23 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 24 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 25 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 26 C 0.01 0.59 7.12 83.58 0.60 1.19 16 27 H 0.07 1.24 8.11 -2.39 -0.02 1.22 16 28 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 29 H 0.03 0.83 8.03 -2.39 -0.02 0.81 16 30 H 0.12 1.86 6.70 -2.39 -0.02 1.84 16 31 H 0.13 1.95 8.01 -2.39 -0.02 1.93 16 32 H 0.15 3.30 5.85 -2.91 -0.02 3.29 16 33 H 0.16 2.88 6.29 -2.91 -0.02 2.86 16 34 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.06 0.93 7.66 -2.39 -0.02 0.91 16 36 H 0.07 0.92 7.66 -2.38 -0.02 0.90 16 37 H 0.12 4.34 8.04 -2.91 -0.02 4.32 16 38 H 0.05 1.70 7.43 -2.39 -0.02 1.68 16 39 H 0.09 3.08 7.85 -2.39 -0.02 3.06 16 40 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.06 2.72 7.66 -2.39 -0.02 2.70 16 42 H 0.38 22.49 6.33 -74.06 -0.47 22.02 16 43 H 0.27 14.41 8.31 -92.71 -0.77 13.63 16 44 H 0.08 3.28 7.73 -2.39 -0.02 3.26 16 45 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 Total: -1.00 -68.17 370.72 -2.03 -70.20 By element: Atomic # 1 Polarization: 43.28 SS G_CDS: 0.54 Total: 43.82 kcal Atomic # 6 Polarization: -18.69 SS G_CDS: 6.09 Total: -12.60 kcal Atomic # 7 Polarization: -71.71 SS G_CDS: -5.74 Total: -77.45 kcal Atomic # 8 Polarization: -63.37 SS G_CDS: -4.95 Total: -68.32 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.34 kcal Total: -68.17 -2.03 -70.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191917052.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.212 kcal (2) G-P(sol) polarization free energy of solvation -68.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds