Wall clock time and date at job start Tue Mar 31 2020 14:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35898 * 117.00005 * 2 1 4 4 C 1.38676 * 119.99608 * 179.97438 * 3 2 1 5 5 C 1.38682 * 119.99473 * 179.97438 * 4 3 2 6 6 O 1.35892 * 119.99970 * 180.02562 * 5 4 3 7 7 C 1.42904 * 117.00129 * 359.97438 * 6 5 4 8 8 C 1.38671 * 120.00191 * 359.97438 * 5 4 3 9 9 C 1.50699 * 120.00117 * 180.02562 * 8 5 4 10 10 N 1.46904 * 109.47392 * 89.99822 * 9 8 5 11 11 C 1.47960 * 110.99975 * 190.00152 * 10 9 8 12 12 C 1.53940 * 86.18020 * 222.41827 * 11 10 9 13 13 O 1.42900 * 113.73337 * 269.26005 * 12 11 10 14 14 C 1.50694 * 113.73364 * 138.08016 * 12 11 10 15 15 H 1.08000 * 120.00563 * 1.89939 * 14 12 11 16 16 C 1.37885 * 119.99902 * 181.90102 * 14 12 11 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 C 1.48189 * 111.06803 * 90.56563 * 10 9 8 23 23 C 1.38674 * 119.99979 * 0.27421 * 8 5 4 24 24 O 1.35892 * 120.00096 * 179.72756 * 23 8 5 25 25 C 1.42901 * 117.00241 * 180.02562 * 24 23 8 26 26 C 1.38672 * 119.99983 * 0.02562 * 3 2 1 27 27 H 1.08998 * 109.46943 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47375 * 300.00796 * 1 2 3 29 29 H 1.09002 * 109.46819 * 60.00821 * 1 2 3 30 30 H 1.07997 * 120.00264 * 359.97438 * 4 3 2 31 31 H 1.09004 * 109.47176 * 300.00452 * 7 6 5 32 32 H 1.09004 * 109.46962 * 59.99805 * 7 6 5 33 33 H 1.08999 * 109.47536 * 180.02562 * 7 6 5 34 34 H 1.09003 * 109.46888 * 329.99984 * 9 8 5 35 35 H 1.09005 * 109.47315 * 210.00307 * 9 8 5 36 36 H 1.09000 * 113.75922 * 108.10132 * 11 10 9 37 37 H 1.08996 * 113.85941 * 336.74802 * 11 10 9 38 38 H 0.96699 * 113.99865 * 178.10203 * 13 12 11 39 39 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 40 40 H 1.08996 * 113.76245 * 23.24297 * 22 10 9 41 41 H 1.08999 * 113.82580 * 251.80952 * 22 10 9 42 42 H 1.09001 * 109.47355 * 179.97438 * 25 24 23 43 43 H 1.08997 * 109.47183 * 300.00224 * 25 24 23 44 44 H 1.09001 * 109.47042 * 60.00487 * 25 24 23 45 45 H 1.07994 * 119.99871 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4308 1.2833 0.0005 5 6 4.0604 2.5190 0.0000 6 8 5.4174 2.5902 0.0000 7 6 6.1320 1.3526 0.0011 8 6 3.3051 3.6820 -0.0016 9 6 3.9893 5.0248 -0.0028 10 7 4.2123 5.4596 -1.3882 11 6 5.0885 6.6509 -1.4355 12 6 4.1223 7.1918 -2.5048 13 8 4.4890 6.8423 -3.8410 14 6 3.8016 8.6558 -2.3475 15 1 4.2642 9.2282 -1.5571 16 6 2.9174 9.2647 -3.2128 17 7 2.3543 8.5678 -4.1756 18 14 2.5193 11.0793 -3.0174 19 1 1.3536 11.2356 -2.1108 20 1 3.6925 11.7842 -2.4413 21 1 2.1954 11.6606 -4.3450 22 6 3.0669 6.2565 -1.8873 23 6 1.9203 3.6095 0.0031 24 8 1.1802 4.7491 0.0071 25 6 -0.2410 4.5998 0.0123 26 6 1.2907 2.3739 0.0005 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5140 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 4.0190 0.3776 0.0014 31 1 5.8686 0.7818 0.8916 32 1 5.8687 0.7802 -0.8884 33 1 7.2036 1.5517 0.0015 34 1 4.9470 4.9450 0.5116 35 1 3.3610 5.7531 0.5100 36 1 6.0901 6.4446 -1.8127 37 1 5.0929 7.2319 -0.5133 38 1 3.8690 7.1555 -4.5137 39 1 1.7320 8.9961 -4.7841 40 1 2.4773 6.7209 -1.0968 41 1 2.4563 5.7357 -2.6248 42 1 -0.7098 5.5839 0.0156 43 1 -0.5520 4.0518 -0.8770 44 1 -0.5452 4.0500 0.9030 45 1 0.2122 2.3173 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191917230.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:28 Heat of formation + Delta-G solvation = -87.706554 kcal Electronic energy + Delta-G solvation = -28646.900160 eV Core-core repulsion = 24632.576574 eV Total energy + Delta-G solvation = -4014.323586 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.76531 -39.03643 -38.87323 -38.43570 -35.62594 -34.13678 -31.98397 -31.42724 -29.69229 -28.23694 -27.84462 -27.26816 -26.38564 -25.13311 -24.80769 -22.53892 -21.74114 -20.71875 -18.98677 -18.42164 -17.23970 -17.10086 -16.39166 -16.22869 -16.12548 -15.55604 -15.42375 -15.38277 -14.97917 -14.71191 -14.67643 -14.35141 -13.91419 -13.80884 -13.01213 -12.78675 -12.64082 -12.56103 -12.07718 -11.85888 -11.76541 -11.59834 -11.52717 -11.42367 -11.37356 -11.25446 -11.11358 -10.84840 -10.50986 -10.44008 -10.14725 -9.94244 -9.81520 -9.17027 -8.54601 -8.10956 -8.09722 -7.68471 -7.55651 -6.15309 -4.24438 1.52089 1.55347 2.96557 3.20506 3.24495 3.31703 3.35920 3.79295 3.80509 4.33573 4.82378 4.94586 4.96108 5.01084 5.06136 5.06729 5.10110 5.13027 5.20202 5.22097 5.26384 5.28173 5.36258 5.50872 5.56443 5.60695 5.85184 5.95132 6.16182 6.26220 6.29368 6.35105 6.48424 6.56550 6.63215 6.74923 6.88509 7.12923 7.27018 7.44684 7.47776 7.53862 7.60713 7.87334 8.13538 8.25289 8.76900 9.44647 9.76062 10.90220 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.015415 B = 0.003891 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.948784 B = 7195.214570 C = 8355.681328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.316 6.316 3 C 0.192 3.808 4 C -0.279 4.279 5 C 0.214 3.786 6 O -0.296 6.296 7 C 0.027 3.973 8 C -0.158 4.158 9 C 0.079 3.921 10 N -0.471 5.471 11 C 0.010 3.990 12 C 0.240 3.760 13 O -0.572 6.572 14 C -0.534 4.534 15 H 0.064 0.936 16 C 0.071 3.929 17 N -0.898 5.898 18 Si 0.900 3.100 19 H -0.280 1.280 20 H -0.272 1.272 21 H -0.285 1.285 22 C 0.002 3.998 23 C 0.209 3.791 24 O -0.295 6.295 25 C 0.029 3.971 26 C -0.332 4.332 27 H 0.098 0.902 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.134 0.866 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.099 0.901 34 H 0.071 0.929 35 H 0.048 0.952 36 H 0.072 0.928 37 H 0.062 0.938 38 H 0.386 0.614 39 H 0.268 0.732 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.102 0.898 43 H 0.054 0.946 44 H 0.050 0.950 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.066 -15.434 10.205 18.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.229 6.229 3 C 0.146 3.854 4 C -0.299 4.299 5 C 0.167 3.833 6 O -0.208 6.208 7 C -0.068 4.068 8 C -0.160 4.160 9 C -0.050 4.050 10 N -0.193 5.193 11 C -0.119 4.119 12 C 0.199 3.801 13 O -0.383 6.383 14 C -0.572 4.572 15 H 0.082 0.918 16 C -0.131 4.131 17 N -0.539 5.539 18 Si 0.728 3.272 19 H -0.206 1.206 20 H -0.197 1.197 21 H -0.210 1.210 22 C -0.127 4.127 23 C 0.162 3.838 24 O -0.207 6.207 25 C -0.066 4.066 26 C -0.351 4.351 27 H 0.117 0.883 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.152 0.848 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.118 0.882 34 H 0.090 0.910 35 H 0.066 0.934 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.239 0.761 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.120 0.880 43 H 0.073 0.927 44 H 0.069 0.931 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.223 -16.116 10.029 19.253 hybrid contribution -1.707 1.432 0.308 2.249 sum -4.930 -14.684 10.337 18.622 Atomic orbital electron populations 1.23038 0.78490 1.03687 1.01482 1.86036 1.21348 1.27051 1.88498 1.18225 0.91234 0.83380 0.92552 1.20158 0.92350 0.97324 1.20058 1.17953 0.82516 0.91535 0.91308 1.86175 1.14858 1.32058 1.87667 1.23077 0.96862 0.85597 1.01275 1.18190 0.89401 0.94852 1.13577 1.21152 0.98620 0.91714 0.93468 1.68595 1.08971 1.26273 1.15496 1.24072 0.98485 0.90713 0.98608 1.19817 0.88444 0.90939 0.80898 1.86044 1.54420 1.80861 1.16970 1.21680 1.25566 0.95102 1.14887 0.91802 1.25037 0.94835 0.98546 0.94654 1.69449 1.30242 1.36415 1.17761 0.86468 0.78704 0.84563 0.77505 1.20564 1.19722 1.21033 1.24654 0.94539 0.94611 0.98895 1.18127 0.90010 0.84574 0.91136 1.86210 1.18733 1.28274 1.87511 1.23062 0.78771 1.04016 1.00790 1.21044 1.00204 0.91754 1.22136 0.88338 0.92727 0.92548 0.84812 0.92827 0.92488 0.88237 0.91020 0.93352 0.90926 0.92010 0.76052 0.92147 0.91987 0.91817 0.87967 0.92693 0.93094 0.85000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -3.96 10.49 -19.42 -0.20 -4.17 16 3 C 0.19 2.77 6.68 -39.26 -0.26 2.51 16 4 C -0.28 -4.11 8.97 -39.26 -0.35 -4.47 16 5 C 0.21 3.56 6.65 -39.26 -0.26 3.30 16 6 O -0.30 -4.65 9.53 -19.40 -0.18 -4.83 16 7 C 0.03 0.29 9.81 101.05 0.99 1.28 16 8 C -0.16 -2.89 5.47 -104.30 -0.57 -3.46 16 9 C 0.08 1.56 4.49 -4.97 -0.02 1.53 16 10 N -0.47 -10.77 6.14 -239.46 -1.47 -12.25 16 11 C 0.01 0.23 7.34 -2.76 -0.02 0.21 16 12 C 0.24 6.39 1.40 -90.83 -0.13 6.27 16 13 O -0.57 -16.22 13.48 -35.23 -0.48 -16.69 16 14 C -0.53 -14.75 8.61 -34.44 -0.30 -15.04 16 15 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 16 C 0.07 1.92 5.40 -17.82 -0.10 1.82 16 17 N -0.90 -24.72 11.20 55.43 0.62 -24.10 16 18 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 C 0.00 0.05 6.69 -2.63 -0.02 0.03 16 23 C 0.21 3.54 6.65 -39.26 -0.26 3.28 16 24 O -0.30 -4.97 8.46 -19.40 -0.16 -5.13 16 25 C 0.03 0.34 9.81 101.05 0.99 1.33 16 26 C -0.33 -4.78 8.02 -39.26 -0.31 -5.09 16 27 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 29 H 0.06 0.45 7.66 -51.93 -0.40 0.06 16 30 H 0.13 1.67 6.29 -52.49 -0.33 1.34 16 31 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 32 H 0.06 0.57 7.66 -51.93 -0.40 0.17 16 33 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 1.35 7.47 -51.93 -0.39 0.96 16 35 H 0.05 0.97 6.76 -51.93 -0.35 0.62 16 36 H 0.07 1.68 8.14 -51.93 -0.42 1.26 16 37 H 0.06 1.36 7.88 -51.93 -0.41 0.95 16 38 H 0.39 11.03 6.60 45.56 0.30 11.33 16 39 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 40 H 0.06 1.54 7.05 -51.93 -0.37 1.18 16 41 H 0.06 1.68 8.14 -51.93 -0.42 1.26 16 42 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.05 0.61 7.65 -51.93 -0.40 0.21 16 44 H 0.05 0.49 7.67 -51.93 -0.40 0.09 16 45 H 0.13 1.53 4.52 -52.49 -0.24 1.30 16 LS Contribution 365.32 15.07 5.51 5.51 Total: -1.00 -32.24 365.32 -6.85 -39.09 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -5.83 Total: 12.04 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: 0.37 Total: -5.28 kcal Atomic # 7 Polarization: -35.49 SS G_CDS: -0.85 Total: -36.34 kcal Atomic # 8 Polarization: -29.80 SS G_CDS: -1.03 Total: -30.82 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.24 -6.85 -39.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191917230.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.614 kcal (2) G-P(sol) polarization free energy of solvation -32.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds