Wall clock time and date at job start Tue Mar 31 2020 14:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35898 * 117.00005 * 2 1 4 4 C 1.38676 * 119.99608 * 179.97438 * 3 2 1 5 5 C 1.38682 * 119.99473 * 179.97438 * 4 3 2 6 6 O 1.35892 * 119.99970 * 180.02562 * 5 4 3 7 7 C 1.42904 * 117.00129 * 359.97438 * 6 5 4 8 8 C 1.38671 * 120.00191 * 359.97438 * 5 4 3 9 9 C 1.50699 * 120.00117 * 180.02562 * 8 5 4 10 10 N 1.46904 * 109.47392 * 89.99822 * 9 8 5 11 11 C 1.47960 * 110.99975 * 190.00152 * 10 9 8 12 12 C 1.53940 * 86.18020 * 222.41827 * 11 10 9 13 13 O 1.42900 * 113.73337 * 269.26005 * 12 11 10 14 14 C 1.50694 * 113.73364 * 138.08016 * 12 11 10 15 15 H 1.08000 * 120.00563 * 1.89939 * 14 12 11 16 16 C 1.37885 * 119.99902 * 181.90102 * 14 12 11 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 C 1.48189 * 111.06803 * 90.56563 * 10 9 8 23 23 C 1.38674 * 119.99979 * 0.27421 * 8 5 4 24 24 O 1.35892 * 120.00096 * 179.72756 * 23 8 5 25 25 C 1.42901 * 117.00241 * 180.02562 * 24 23 8 26 26 C 1.38672 * 119.99983 * 0.02562 * 3 2 1 27 27 H 1.08998 * 109.46943 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47375 * 300.00796 * 1 2 3 29 29 H 1.09002 * 109.46819 * 60.00821 * 1 2 3 30 30 H 1.07997 * 120.00264 * 359.97438 * 4 3 2 31 31 H 1.09004 * 109.47176 * 300.00452 * 7 6 5 32 32 H 1.09004 * 109.46962 * 59.99805 * 7 6 5 33 33 H 1.08999 * 109.47536 * 180.02562 * 7 6 5 34 34 H 1.09003 * 109.46888 * 329.99984 * 9 8 5 35 35 H 1.09005 * 109.47315 * 210.00307 * 9 8 5 36 36 H 1.09000 * 113.75922 * 108.10132 * 11 10 9 37 37 H 1.08996 * 113.85941 * 336.74802 * 11 10 9 38 38 H 0.96699 * 113.99865 * 178.10203 * 13 12 11 39 39 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 40 40 H 1.08996 * 113.76245 * 23.24297 * 22 10 9 41 41 H 1.08999 * 113.82580 * 251.80952 * 22 10 9 42 42 H 1.09001 * 109.47355 * 179.97438 * 25 24 23 43 43 H 1.08997 * 109.47183 * 300.00224 * 25 24 23 44 44 H 1.09001 * 109.47042 * 60.00487 * 25 24 23 45 45 H 1.07994 * 119.99871 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4308 1.2833 0.0005 5 6 4.0604 2.5190 0.0000 6 8 5.4174 2.5902 0.0000 7 6 6.1320 1.3526 0.0011 8 6 3.3051 3.6820 -0.0016 9 6 3.9893 5.0248 -0.0028 10 7 4.2123 5.4596 -1.3882 11 6 5.0885 6.6509 -1.4355 12 6 4.1223 7.1918 -2.5048 13 8 4.4890 6.8423 -3.8410 14 6 3.8016 8.6558 -2.3475 15 1 4.2642 9.2282 -1.5571 16 6 2.9174 9.2647 -3.2128 17 7 2.3543 8.5678 -4.1756 18 14 2.5193 11.0793 -3.0174 19 1 1.3536 11.2356 -2.1108 20 1 3.6925 11.7842 -2.4413 21 1 2.1954 11.6606 -4.3450 22 6 3.0669 6.2565 -1.8873 23 6 1.9203 3.6095 0.0031 24 8 1.1802 4.7491 0.0071 25 6 -0.2410 4.5998 0.0123 26 6 1.2907 2.3739 0.0005 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5140 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 4.0190 0.3776 0.0014 31 1 5.8686 0.7818 0.8916 32 1 5.8687 0.7802 -0.8884 33 1 7.2036 1.5517 0.0015 34 1 4.9470 4.9450 0.5116 35 1 3.3610 5.7531 0.5100 36 1 6.0901 6.4446 -1.8127 37 1 5.0929 7.2319 -0.5133 38 1 3.8690 7.1555 -4.5137 39 1 1.7320 8.9961 -4.7841 40 1 2.4773 6.7209 -1.0968 41 1 2.4563 5.7357 -2.6248 42 1 -0.7098 5.5839 0.0156 43 1 -0.5520 4.0518 -0.8770 44 1 -0.5452 4.0500 0.9030 45 1 0.2122 2.3173 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191917230.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:27 Heat of formation + Delta-G solvation = -113.409914 kcal Electronic energy + Delta-G solvation = -28648.014742 eV Core-core repulsion = 24632.576574 eV Total energy + Delta-G solvation = -4015.438168 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.91841 -40.56415 -40.00328 -39.77045 -36.82874 -36.05072 -34.09936 -32.82280 -30.78732 -29.60063 -28.96650 -28.12049 -27.78541 -26.80239 -26.57097 -24.10717 -22.84151 -22.11955 -20.42808 -20.03633 -19.16354 -18.32938 -17.39636 -17.34650 -17.24674 -17.08848 -16.65877 -16.63112 -16.40144 -16.33659 -15.78381 -15.68324 -15.59915 -15.46857 -14.48881 -14.11838 -13.90900 -13.72308 -13.49036 -13.39887 -13.29295 -13.16963 -12.82486 -12.63074 -12.54248 -12.44385 -12.42498 -12.35373 -12.24989 -12.15674 -11.81559 -11.70857 -11.16441 -10.96468 -10.61069 -10.09246 -9.46811 -9.23108 -8.95048 -8.20577 -6.38822 0.35582 0.38185 1.42295 1.44106 1.54846 1.94388 2.28198 2.39272 2.60886 2.76437 3.00015 3.35118 3.83485 3.87812 3.95723 4.00483 4.16481 4.25159 4.27816 4.31932 4.33707 4.34215 4.36971 4.40047 4.43693 4.56612 4.58406 4.67307 4.68970 4.73343 4.77611 4.77944 4.92587 4.96353 5.17410 5.20195 5.27799 5.42095 5.47399 5.66209 5.77875 6.03250 6.14787 6.38176 6.41653 6.52125 6.65829 7.33504 7.54263 8.84205 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.015415 B = 0.003891 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.948784 B = 7195.214570 C = 8355.681328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.323 6.323 3 C 0.196 3.804 4 C -0.284 4.284 5 C 0.210 3.790 6 O -0.320 6.320 7 C 0.018 3.982 8 C -0.198 4.198 9 C 0.089 3.911 10 N -0.474 5.474 11 C 0.017 3.983 12 C 0.217 3.783 13 O -0.584 6.584 14 C -0.561 4.561 15 H 0.063 0.937 16 C 0.028 3.972 17 N -0.919 5.919 18 Si 0.967 3.033 19 H -0.272 1.272 20 H -0.270 1.270 21 H -0.279 1.279 22 C 0.024 3.976 23 C 0.198 3.802 24 O -0.325 6.325 25 C 0.019 3.981 26 C -0.331 4.331 27 H 0.126 0.874 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.155 0.845 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.119 0.881 34 H 0.077 0.923 35 H 0.040 0.960 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.380 0.620 39 H 0.273 0.727 40 H 0.056 0.944 41 H 0.039 0.961 42 H 0.110 0.890 43 H 0.061 0.939 44 H 0.077 0.923 45 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.036 -16.459 11.177 20.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.236 6.236 3 C 0.149 3.851 4 C -0.304 4.304 5 C 0.162 3.838 6 O -0.233 6.233 7 C -0.076 4.076 8 C -0.200 4.200 9 C -0.039 4.039 10 N -0.197 5.197 11 C -0.112 4.112 12 C 0.176 3.824 13 O -0.395 6.395 14 C -0.599 4.599 15 H 0.081 0.919 16 C -0.171 4.171 17 N -0.559 5.559 18 Si 0.792 3.208 19 H -0.198 1.198 20 H -0.194 1.194 21 H -0.204 1.204 22 C -0.105 4.105 23 C 0.151 3.849 24 O -0.238 6.238 25 C -0.075 4.075 26 C -0.350 4.350 27 H 0.144 0.856 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.172 0.828 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.137 0.863 34 H 0.095 0.905 35 H 0.058 0.942 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.233 0.767 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.057 0.943 42 H 0.128 0.872 43 H 0.080 0.920 44 H 0.095 0.905 45 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -4.195 -17.167 11.014 20.823 hybrid contribution -1.450 1.611 0.012 2.167 sum -5.644 -15.556 11.026 19.885 Atomic orbital electron populations 1.23405 0.76210 1.05909 1.02281 1.86043 1.23679 1.25902 1.87956 1.18373 0.91389 0.84106 0.91234 1.20369 0.92962 0.97353 1.19687 1.18049 0.82987 0.91691 0.91057 1.86132 1.14685 1.34887 1.87567 1.23394 0.97428 0.84336 1.02428 1.18258 0.90443 0.94445 1.16875 1.21013 0.98954 0.92740 0.91216 1.68534 1.07677 1.25430 1.18050 1.24016 0.98048 0.91010 0.98086 1.20175 0.90346 0.91285 0.80597 1.86027 1.54567 1.81042 1.17845 1.21906 1.26506 0.95857 1.15588 0.91917 1.25803 0.94367 1.02823 0.94143 1.69531 1.30275 1.38043 1.18088 0.85426 0.78563 0.79175 0.77658 1.19754 1.19438 1.20445 1.24267 0.94189 0.94089 0.97959 1.18300 0.89838 0.85486 0.91264 1.86161 1.20988 1.29007 1.87614 1.23345 0.76573 1.05195 1.02367 1.21248 1.01564 0.90773 1.21401 0.85561 0.91449 0.92161 0.82773 0.90911 0.91992 0.86327 0.90499 0.94196 0.90873 0.90747 0.76697 0.91771 0.92578 0.94264 0.87198 0.92041 0.90452 0.82397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.32 -7.25 10.49 -92.40 -0.97 -8.22 16 3 C 0.20 5.29 6.68 22.48 0.15 5.44 16 4 C -0.28 -8.00 8.97 22.48 0.20 -7.80 16 5 C 0.21 6.90 6.65 22.48 0.15 7.05 16 6 O -0.32 -9.94 9.53 -92.34 -0.88 -10.82 16 7 C 0.02 0.36 9.81 113.37 1.11 1.47 16 8 C -0.20 -7.33 5.47 -19.66 -0.11 -7.44 16 9 C 0.09 3.58 4.49 85.56 0.38 3.96 16 10 N -0.47 -22.20 6.14 -914.72 -5.62 -27.82 16 11 C 0.02 0.81 7.34 86.41 0.63 1.45 16 12 C 0.22 11.80 1.40 -10.89 -0.02 11.79 16 13 O -0.58 -34.06 13.48 -148.98 -2.01 -36.07 16 14 C -0.56 -31.37 8.61 25.60 0.22 -31.15 16 15 H 0.06 3.43 7.81 -2.91 -0.02 3.40 16 16 C 0.03 1.54 5.40 84.66 0.46 1.99 16 17 N -0.92 -51.11 11.20 21.45 0.24 -50.87 16 18 Si 0.97 42.60 29.54 68.60 2.03 44.63 16 19 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 20 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 21 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 22 C 0.02 1.25 6.69 86.37 0.58 1.83 16 23 C 0.20 6.70 6.65 22.48 0.15 6.85 16 24 O -0.32 -10.99 8.46 -92.33 -0.78 -11.77 16 25 C 0.02 0.44 9.81 113.37 1.11 1.55 16 26 C -0.33 -9.04 8.02 22.48 0.18 -8.86 16 27 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.07 0.77 7.66 -2.38 -0.02 0.75 16 29 H 0.06 0.79 7.66 -2.39 -0.02 0.78 16 30 H 0.15 3.54 6.29 -2.91 -0.02 3.52 16 31 H 0.07 1.14 7.66 -2.38 -0.02 1.12 16 32 H 0.06 1.15 7.66 -2.39 -0.02 1.13 16 33 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.08 2.94 7.47 -2.39 -0.02 2.93 16 35 H 0.04 1.65 6.76 -2.38 -0.02 1.63 16 36 H 0.07 3.44 8.14 -2.39 -0.02 3.42 16 37 H 0.07 3.31 7.88 -2.39 -0.02 3.29 16 38 H 0.38 22.47 6.60 -74.06 -0.49 21.98 16 39 H 0.27 14.24 8.31 -92.71 -0.77 13.46 16 40 H 0.06 2.89 7.05 -2.39 -0.02 2.87 16 41 H 0.04 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.06 1.29 7.65 -2.39 -0.02 1.27 16 44 H 0.08 1.32 7.67 -2.39 -0.02 1.30 16 45 H 0.16 3.29 4.52 -2.91 -0.01 3.27 16 Total: -1.00 -70.14 365.32 -1.14 -71.28 By element: Atomic # 1 Polarization: 39.66 SS G_CDS: 0.53 Total: 40.19 kcal Atomic # 6 Polarization: -16.84 SS G_CDS: 6.32 Total: -10.52 kcal Atomic # 7 Polarization: -73.31 SS G_CDS: -5.38 Total: -78.69 kcal Atomic # 8 Polarization: -62.25 SS G_CDS: -4.64 Total: -66.89 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -70.14 -1.14 -71.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191917230.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.126 kcal (2) G-P(sol) polarization free energy of solvation -70.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds