Wall clock time and date at job start Tue Mar 31 2020 14:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48503 * 109.47574 * 269.99934 * 3 2 1 5 5 H 1.48500 * 109.47346 * 30.00046 * 3 2 1 6 6 H 1.48499 * 109.47067 * 149.99696 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 O 1.42906 * 109.46748 * 179.97438 * 10 9 7 12 12 C 1.35983 * 116.99537 * 179.97438 * 11 10 9 13 13 C 1.38781 * 120.49767 * 0.02562 * 12 11 10 14 14 C 1.38794 * 118.44752 * 179.97438 * 13 12 11 15 15 C 1.38075 * 119.35183 * 359.97438 * 14 13 12 16 16 N 1.31963 * 120.95403 * 359.97438 * 15 14 13 17 17 C 1.32266 * 121.69068 * 359.72759 * 16 15 14 18 18 N 1.39594 * 119.72727 * 180.26509 * 17 16 15 19 19 C 1.34774 * 119.99891 * 0.26464 * 18 17 16 20 20 O 1.21589 * 119.99929 * 0.02562 * 19 18 17 21 21 N 1.34775 * 120.00006 * 179.97438 * 19 18 17 22 22 C 1.46496 * 119.99986 * 180.02562 * 21 19 18 23 23 C 1.53004 * 109.46728 * 179.97438 * 22 21 19 24 24 C 1.53004 * 109.46830 * 179.97438 * 23 22 21 25 25 C 1.52997 * 109.47085 * 179.97438 * 24 23 22 26 26 O 1.42904 * 109.47386 * 180.02562 * 25 24 23 27 27 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 28 28 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 29 29 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 30 30 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 31 31 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 32 32 H 1.07993 * 120.77611 * 359.94975 * 13 12 11 33 33 H 1.07997 * 120.32400 * 180.02562 * 14 13 12 34 34 H 1.08000 * 119.51826 * 179.97438 * 15 14 13 35 35 H 0.97000 * 119.99898 * 180.26996 * 18 17 16 36 36 H 0.97000 * 119.99782 * 0.02562 * 21 19 18 37 37 H 1.08998 * 109.47109 * 299.99543 * 22 21 19 38 38 H 1.09003 * 109.47550 * 60.00165 * 22 21 19 39 39 H 1.08989 * 109.47533 * 299.99591 * 23 22 21 40 40 H 1.09002 * 109.47337 * 60.00188 * 23 22 21 41 41 H 1.09004 * 109.47521 * 300.00270 * 24 23 22 42 42 H 1.09003 * 109.47153 * 60.00386 * 24 23 22 43 43 H 1.09002 * 109.47567 * 300.00142 * 25 24 23 44 44 H 1.09002 * 109.47208 * 60.00534 * 25 24 23 45 45 H 0.96697 * 114.00044 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 8 1.5309 -4.8997 0.0001 12 6 2.2716 -6.0401 -0.0004 13 6 3.6581 -5.9794 -0.0009 14 6 4.3720 -7.1696 -0.0008 15 6 3.6880 -8.3691 0.0003 16 7 2.3687 -8.3981 0.0018 17 6 1.6493 -7.2882 0.0076 18 7 0.2556 -7.3667 0.0145 19 6 -0.3515 -8.5700 0.0207 20 8 0.3147 -9.5871 0.0206 21 7 -1.6971 -8.6458 0.0279 22 6 -2.3570 -9.9537 0.0351 23 6 -3.8746 -9.7591 0.0431 24 6 -4.5639 -11.1251 0.0500 25 6 -6.0814 -10.9305 0.0586 26 8 -6.7252 -12.2063 0.0657 27 1 -0.4850 0.8400 -0.0004 28 1 0.6241 -2.5568 -0.8902 29 1 0.6248 -2.5571 0.8897 30 1 2.8721 -3.6043 -0.8905 31 1 2.8721 -3.6042 0.8895 32 1 4.1696 -5.0282 -0.0017 33 1 5.4519 -7.1577 -0.0007 34 1 4.2408 -9.2969 0.0000 35 1 -0.2759 -6.5553 0.0149 36 1 -2.2286 -7.8343 0.0283 37 1 -2.0666 -10.5121 -0.8548 38 1 -2.0574 -10.5070 0.9252 39 1 -4.1647 -9.2009 0.9331 40 1 -4.1747 -9.2056 -0.8467 41 1 -4.2737 -11.6830 -0.8403 42 1 -4.2639 -11.6789 0.9397 43 1 -6.3712 -10.3728 0.9492 44 1 -6.3818 -10.3766 -0.8308 45 1 -7.6910 -12.1594 0.0710 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193692005.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:16 Heat of formation + Delta-G solvation = -86.510302 kcal Electronic energy + Delta-G solvation = -26001.204948 eV Core-core repulsion = 22019.225986 eV Total energy + Delta-G solvation = -3981.978962 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.88281 -39.54271 -37.83847 -37.64196 -35.94333 -34.65486 -33.48114 -33.19817 -31.55452 -30.56941 -29.22221 -27.96185 -25.41920 -24.11420 -23.08235 -22.61837 -21.73436 -21.14220 -20.48708 -18.68244 -18.11136 -17.61405 -17.44831 -16.50855 -16.19041 -15.95924 -15.83358 -15.62723 -15.35065 -14.67786 -14.53873 -14.45754 -14.43207 -13.92366 -13.85943 -13.52594 -12.83032 -12.53555 -12.41347 -12.31223 -12.23560 -11.99431 -11.91729 -11.34360 -11.27897 -11.07172 -11.00041 -10.68820 -10.67342 -10.40028 -10.37144 -10.04720 -9.78855 -9.42484 -9.25851 -9.07643 -9.04418 -8.53439 -7.60924 -6.19352 -4.24119 1.29815 1.49005 2.44556 3.21609 3.24251 3.27869 3.30088 3.54910 3.68006 4.03695 4.08639 4.32871 4.48090 4.49371 4.70291 4.86904 4.88581 4.96073 4.98652 5.10835 5.16979 5.17610 5.28448 5.34123 5.44877 5.50389 5.61087 5.81788 5.84830 5.87549 5.90506 6.07926 6.20955 6.34318 6.39674 6.54475 6.60125 6.85289 7.18033 7.35052 7.51588 7.63443 7.74234 7.87343 8.13319 8.28036 8.64862 8.81127 9.40836 10.92097 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010407 B = 0.002321 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2689.722080 B =12061.090232 C =14709.140074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.027 3.973 10 C 0.066 3.934 11 O -0.317 6.317 12 C 0.064 3.936 13 C -0.146 4.146 14 C -0.163 4.163 15 C 0.077 3.923 16 N -0.442 5.442 17 C 0.347 3.653 18 N -0.661 5.661 19 C 0.696 3.304 20 O -0.536 6.536 21 N -0.748 5.748 22 C 0.142 3.858 23 C -0.130 4.130 24 C -0.118 4.118 25 C 0.075 3.925 26 O -0.577 6.577 27 H 0.264 0.736 28 H 0.028 0.972 29 H 0.028 0.972 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.145 0.855 33 H 0.134 0.866 34 H 0.156 0.844 35 H 0.420 0.580 36 H 0.397 0.603 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.047 0.953 44 H 0.047 0.953 45 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.342 -18.502 0.089 19.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.011 4.011 10 C -0.008 4.008 11 O -0.229 6.229 12 C 0.013 3.987 13 C -0.173 4.173 14 C -0.185 4.185 15 C -0.080 4.080 16 N -0.157 5.157 17 C 0.113 3.887 18 N -0.311 5.311 19 C 0.395 3.605 20 O -0.407 6.407 21 N -0.405 5.405 22 C 0.017 3.983 23 C -0.168 4.168 24 C -0.156 4.156 25 C -0.003 4.003 26 O -0.382 6.382 27 H 0.073 0.927 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.162 0.838 33 H 0.152 0.848 34 H 0.173 0.827 35 H 0.257 0.743 36 H 0.231 0.769 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -5.983 -20.342 0.090 21.204 hybrid contribution 0.008 2.998 -0.010 2.998 sum -5.975 -17.344 0.080 18.344 Atomic orbital electron populations 1.69963 1.06100 1.27070 1.49592 1.24984 0.94928 0.99430 0.94810 0.86477 0.79751 0.82847 0.78264 1.20466 1.21028 1.19736 1.20953 0.93086 0.90139 1.52421 0.92318 1.19123 0.94142 0.88948 0.98839 1.23384 0.97231 0.80336 0.99836 1.86095 1.36224 1.12887 1.87729 1.19538 0.91124 0.86965 1.01123 1.21585 0.92158 1.00337 1.03233 1.21883 1.01160 0.92540 1.02884 1.22414 0.88794 0.97863 0.98936 1.67628 1.07739 1.26813 1.13489 1.17488 0.83902 0.86895 1.00409 1.42493 1.04061 1.08945 1.75610 1.15939 0.81991 0.83828 0.78710 1.91030 1.63060 1.33003 1.53620 1.45127 1.04750 1.09662 1.80988 1.21136 0.90553 0.83883 1.02691 1.21702 0.94167 0.97641 1.03279 1.21395 0.93134 0.97109 1.03931 1.22188 0.93318 0.84861 0.99897 1.86473 1.24040 1.29974 1.97740 0.92657 0.95377 0.95380 0.92952 0.92957 0.83763 0.84832 0.82664 0.74262 0.76882 0.91396 0.91401 0.90851 0.90858 0.90741 0.90749 0.93512 0.93508 0.77293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.40 13.29 55.43 0.74 -24.67 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 7 C -0.53 -14.03 9.11 -34.44 -0.31 -14.35 16 8 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 9 C 0.03 0.65 5.34 -27.88 -0.15 0.50 16 10 C 0.07 1.30 4.70 37.16 0.17 1.47 16 11 O -0.32 -5.82 9.39 -19.69 -0.18 -6.00 16 12 C 0.06 1.08 6.72 -38.92 -0.26 0.82 16 13 C -0.15 -2.15 9.14 -39.17 -0.36 -2.51 16 14 C -0.16 -2.07 10.10 -39.44 -0.40 -2.47 16 15 C 0.08 1.07 11.17 -17.56 -0.20 0.87 16 16 N -0.44 -7.64 7.87 -12.22 -0.10 -7.73 16 17 C 0.35 5.89 7.45 -154.43 -1.15 4.74 16 18 N -0.66 -9.91 5.40 -15.67 -0.08 -10.00 16 19 C 0.70 10.46 8.53 -86.92 -0.74 9.72 16 20 O -0.54 -10.02 14.59 5.29 0.08 -9.94 16 21 N -0.75 -7.91 5.56 -65.23 -0.36 -8.28 16 22 C 0.14 1.29 5.67 -4.04 -0.02 1.27 16 23 C -0.13 -0.80 5.33 -26.73 -0.14 -0.95 16 24 C -0.12 -0.78 5.58 -26.73 -0.15 -0.93 16 25 C 0.08 0.45 7.05 37.16 0.26 0.72 16 26 O -0.58 -4.20 13.66 -35.23 -0.48 -4.69 16 27 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.98 7.70 -51.93 -0.40 0.58 16 31 H 0.05 0.98 7.70 -51.93 -0.40 0.58 16 32 H 0.14 1.96 6.44 -52.49 -0.34 1.62 16 33 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 34 H 0.16 1.71 8.06 -52.49 -0.42 1.28 16 35 H 0.42 5.50 8.06 -40.82 -0.33 5.17 16 36 H 0.40 3.16 8.49 -40.82 -0.35 2.82 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.41 8.14 -51.94 -0.42 -0.01 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 44 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 45 H 0.38 1.05 9.12 45.56 0.42 1.46 16 LS Contribution 383.05 15.07 5.77 5.77 Total: -1.00 -34.82 383.05 -9.20 -44.02 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -6.01 Total: 5.47 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: -3.54 Total: 0.47 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: 0.19 Total: -50.68 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.59 Total: -20.62 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.82 -9.20 -44.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193692005.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.492 kcal (2) G-P(sol) polarization free energy of solvation -34.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds