Wall clock time and date at job start Tue Mar 31 2020 14:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48503 * 109.47574 * 269.99934 * 3 2 1 5 5 H 1.48500 * 109.47346 * 30.00046 * 3 2 1 6 6 H 1.48499 * 109.47067 * 149.99696 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 O 1.42906 * 109.46748 * 179.97438 * 10 9 7 12 12 C 1.35983 * 116.99537 * 179.97438 * 11 10 9 13 13 C 1.38781 * 120.49767 * 0.02562 * 12 11 10 14 14 C 1.38794 * 118.44752 * 179.97438 * 13 12 11 15 15 C 1.38075 * 119.35183 * 359.97438 * 14 13 12 16 16 N 1.31963 * 120.95403 * 359.97438 * 15 14 13 17 17 C 1.32266 * 121.69068 * 359.72759 * 16 15 14 18 18 N 1.39594 * 119.72727 * 180.26509 * 17 16 15 19 19 C 1.34774 * 119.99891 * 0.26464 * 18 17 16 20 20 O 1.21589 * 119.99929 * 0.02562 * 19 18 17 21 21 N 1.34775 * 120.00006 * 179.97438 * 19 18 17 22 22 C 1.46496 * 119.99986 * 180.02562 * 21 19 18 23 23 C 1.53004 * 109.46728 * 179.97438 * 22 21 19 24 24 C 1.53004 * 109.46830 * 179.97438 * 23 22 21 25 25 C 1.52997 * 109.47085 * 179.97438 * 24 23 22 26 26 O 1.42904 * 109.47386 * 180.02562 * 25 24 23 27 27 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 28 28 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 29 29 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 30 30 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 31 31 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 32 32 H 1.07993 * 120.77611 * 359.94975 * 13 12 11 33 33 H 1.07997 * 120.32400 * 180.02562 * 14 13 12 34 34 H 1.08000 * 119.51826 * 179.97438 * 15 14 13 35 35 H 0.97000 * 119.99898 * 180.26996 * 18 17 16 36 36 H 0.97000 * 119.99782 * 0.02562 * 21 19 18 37 37 H 1.08998 * 109.47109 * 299.99543 * 22 21 19 38 38 H 1.09003 * 109.47550 * 60.00165 * 22 21 19 39 39 H 1.08989 * 109.47533 * 299.99591 * 23 22 21 40 40 H 1.09002 * 109.47337 * 60.00188 * 23 22 21 41 41 H 1.09004 * 109.47521 * 300.00270 * 24 23 22 42 42 H 1.09003 * 109.47153 * 60.00386 * 24 23 22 43 43 H 1.09002 * 109.47567 * 300.00142 * 25 24 23 44 44 H 1.09002 * 109.47208 * 60.00534 * 25 24 23 45 45 H 0.96697 * 114.00044 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 8 1.5309 -4.8997 0.0001 12 6 2.2716 -6.0401 -0.0004 13 6 3.6581 -5.9794 -0.0009 14 6 4.3720 -7.1696 -0.0008 15 6 3.6880 -8.3691 0.0003 16 7 2.3687 -8.3981 0.0018 17 6 1.6493 -7.2882 0.0076 18 7 0.2556 -7.3667 0.0145 19 6 -0.3515 -8.5700 0.0207 20 8 0.3147 -9.5871 0.0206 21 7 -1.6971 -8.6458 0.0279 22 6 -2.3570 -9.9537 0.0351 23 6 -3.8746 -9.7591 0.0431 24 6 -4.5639 -11.1251 0.0500 25 6 -6.0814 -10.9305 0.0586 26 8 -6.7252 -12.2063 0.0657 27 1 -0.4850 0.8400 -0.0004 28 1 0.6241 -2.5568 -0.8902 29 1 0.6248 -2.5571 0.8897 30 1 2.8721 -3.6043 -0.8905 31 1 2.8721 -3.6042 0.8895 32 1 4.1696 -5.0282 -0.0017 33 1 5.4519 -7.1577 -0.0007 34 1 4.2408 -9.2969 0.0000 35 1 -0.2759 -6.5553 0.0149 36 1 -2.2286 -7.8343 0.0283 37 1 -2.0666 -10.5121 -0.8548 38 1 -2.0574 -10.5070 0.9252 39 1 -4.1647 -9.2009 0.9331 40 1 -4.1747 -9.2056 -0.8467 41 1 -4.2737 -11.6830 -0.8403 42 1 -4.2639 -11.6789 0.9397 43 1 -6.3712 -10.3728 0.9492 44 1 -6.3818 -10.3766 -0.8308 45 1 -7.6910 -12.1594 0.0710 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193692005.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:16 Heat of formation + Delta-G solvation = -112.531882 kcal Electronic energy + Delta-G solvation = -26002.333328 eV Core-core repulsion = 22019.225986 eV Total energy + Delta-G solvation = -3983.107342 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.06723 -40.70939 -39.12785 -38.22545 -36.74518 -35.87151 -35.43070 -33.97980 -32.85146 -32.18488 -30.45026 -28.73104 -27.15375 -25.22950 -24.24483 -23.63202 -22.70403 -22.35745 -21.65415 -19.84792 -19.29576 -18.80886 -18.14146 -18.01830 -17.29007 -17.22599 -17.02122 -16.56962 -16.47450 -16.40496 -15.60094 -15.42021 -15.32136 -15.14385 -14.68954 -14.65356 -14.34527 -14.13407 -13.63554 -13.27690 -13.24205 -12.93341 -12.83261 -12.78550 -12.73729 -12.43318 -11.92515 -11.87250 -11.77950 -11.68916 -11.65003 -11.57173 -11.39739 -10.85884 -10.60106 -10.42492 -10.23493 -10.10373 -8.81111 -8.25240 -6.37432 0.16076 0.31858 1.40984 1.43101 1.43862 1.54773 2.08502 2.12863 2.45024 2.90553 2.92748 3.10067 3.38532 3.59203 3.88186 3.91005 3.95038 4.01390 4.15371 4.31269 4.33145 4.35580 4.36327 4.43609 4.49469 4.64879 4.75948 4.76758 4.82864 4.92717 4.99139 5.15491 5.25505 5.28679 5.28847 5.32660 5.44112 5.51733 5.53360 5.72189 5.83366 6.09056 6.36052 6.72221 6.77465 6.90575 7.17026 7.32466 7.52348 8.87325 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010407 B = 0.002321 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2689.722080 B =12061.090232 C =14709.140074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.970 3.030 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.544 4.544 8 H 0.071 0.929 9 C 0.030 3.970 10 C 0.083 3.917 11 O -0.328 6.328 12 C 0.040 3.960 13 C -0.147 4.147 14 C -0.147 4.147 15 C 0.074 3.926 16 N -0.474 5.474 17 C 0.328 3.672 18 N -0.660 5.660 19 C 0.692 3.308 20 O -0.577 6.577 21 N -0.731 5.731 22 C 0.141 3.859 23 C -0.115 4.115 24 C -0.118 4.118 25 C 0.074 3.926 26 O -0.601 6.601 27 H 0.266 0.734 28 H 0.002 0.998 29 H 0.002 0.998 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.158 0.842 33 H 0.176 0.824 34 H 0.185 0.815 35 H 0.425 0.575 36 H 0.412 0.588 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.947 -18.138 0.094 18.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.195 4.195 3 Si 0.794 3.206 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.582 4.582 8 H 0.089 0.911 9 C -0.007 4.007 10 C 0.009 3.991 11 O -0.242 6.242 12 C -0.011 4.011 13 C -0.173 4.173 14 C -0.168 4.168 15 C -0.083 4.083 16 N -0.189 5.189 17 C 0.095 3.905 18 N -0.311 5.311 19 C 0.391 3.609 20 O -0.451 6.451 21 N -0.389 5.389 22 C 0.017 3.983 23 C -0.153 4.153 24 C -0.156 4.156 25 C -0.004 4.004 26 O -0.410 6.410 27 H 0.075 0.925 28 H 0.020 0.980 29 H 0.020 0.980 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.175 0.825 33 H 0.193 0.807 34 H 0.202 0.798 35 H 0.264 0.736 36 H 0.248 0.752 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -4.635 -19.971 0.095 20.502 hybrid contribution -0.408 2.749 -0.012 2.779 sum -5.043 -17.223 0.083 17.946 Atomic orbital electron populations 1.70096 1.07852 1.28094 1.50749 1.25959 0.95789 1.03426 0.94375 0.85364 0.78669 0.78001 0.78525 1.19769 1.20939 1.18391 1.21407 0.93888 0.91071 1.51820 0.91104 1.18946 0.94531 0.90970 0.96300 1.22955 0.95624 0.79635 1.00892 1.86023 1.36577 1.12970 1.88613 1.19670 0.92122 0.86040 1.03260 1.21891 0.91348 1.01833 1.02258 1.22269 1.03054 0.91033 1.00425 1.23052 0.88052 0.99788 0.97389 1.67675 1.09431 1.27210 1.14592 1.17691 0.84606 0.87048 1.01169 1.42505 1.03885 1.09203 1.75465 1.16158 0.83034 0.83253 0.78456 1.90986 1.64294 1.34185 1.55681 1.45061 1.03392 1.10980 1.79438 1.21230 0.92434 0.82950 1.01703 1.21586 0.91550 0.97720 1.04465 1.21379 0.94080 0.97031 1.03110 1.22227 0.92490 0.84660 1.00998 1.86420 1.25878 1.30837 1.97824 0.92544 0.97971 0.97965 0.91791 0.91816 0.82469 0.80689 0.79810 0.73637 0.75194 0.92441 0.92445 0.89621 0.89626 0.91610 0.91621 0.92377 0.92369 0.75229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.91 13.29 21.45 0.28 -53.62 16 2 C 0.00 0.18 5.46 84.65 0.46 0.64 16 3 Si 0.97 41.74 29.54 68.60 2.03 43.77 16 4 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 5 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 6 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 7 C -0.54 -28.86 9.11 25.60 0.23 -28.62 16 8 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 9 C 0.03 1.49 5.34 29.85 0.16 1.65 16 10 C 0.08 3.23 4.70 71.98 0.34 3.57 16 11 O -0.33 -12.15 9.39 -93.36 -0.88 -13.02 16 12 C 0.04 1.33 6.72 22.70 0.15 1.48 16 13 C -0.15 -4.01 9.14 22.53 0.21 -3.80 16 14 C -0.15 -3.26 10.10 22.36 0.23 -3.04 16 15 C 0.07 1.91 11.17 84.63 0.95 2.86 16 16 N -0.47 -16.21 7.87 -192.58 -1.52 -17.73 16 17 C 0.33 11.20 7.45 132.98 0.99 12.19 16 18 N -0.66 -20.29 5.40 -321.76 -1.74 -22.03 16 19 C 0.69 21.27 8.53 179.06 1.53 22.80 16 20 O -0.58 -22.17 14.59 -4.00 -0.06 -22.23 16 21 N -0.73 -15.53 5.56 -478.54 -2.66 -18.19 16 22 C 0.14 2.59 5.67 86.38 0.49 3.08 16 23 C -0.12 -1.31 5.33 30.60 0.16 -1.15 16 24 C -0.12 -1.51 5.58 30.59 0.17 -1.34 16 25 C 0.07 0.80 7.05 71.98 0.51 1.31 16 26 O -0.60 -8.25 13.66 -148.98 -2.04 -10.29 16 27 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 28 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 29 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 30 H 0.06 2.32 7.70 -2.39 -0.02 2.30 16 31 H 0.06 2.31 7.70 -2.39 -0.02 2.29 16 32 H 0.16 3.83 6.44 -2.91 -0.02 3.81 16 33 H 0.18 2.42 8.06 -2.91 -0.02 2.39 16 34 H 0.19 3.52 8.06 -2.91 -0.02 3.50 16 35 H 0.43 11.54 8.06 -92.71 -0.75 10.79 16 36 H 0.41 6.35 8.49 -92.71 -0.79 5.56 16 37 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 44 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 45 H 0.40 1.79 9.12 -74.06 -0.68 1.12 16 Total: -1.00 -76.55 383.05 -1.18 -77.73 By element: Atomic # 1 Polarization: 25.16 SS G_CDS: -1.18 Total: 23.98 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: 6.57 Total: 11.62 kcal Atomic # 7 Polarization: -105.94 SS G_CDS: -5.63 Total: -111.56 kcal Atomic # 8 Polarization: -42.57 SS G_CDS: -2.97 Total: -45.54 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -76.55 -1.18 -77.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193692005.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.800 kcal (2) G-P(sol) polarization free energy of solvation -76.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds