Wall clock time and date at job start Tue Mar 31 2020 14:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42905 * 113.99946 * 2 1 4 4 C 1.53000 * 109.47234 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46739 * 65.00119 * 4 3 2 6 6 C 1.46495 * 119.99717 * 269.99750 * 5 4 3 7 7 C 1.53006 * 109.47353 * 267.21667 * 6 5 4 8 8 O 1.42906 * 109.46777 * 65.00097 * 7 6 5 9 9 C 1.42896 * 113.99844 * 179.97438 * 8 7 6 10 10 C 1.34775 * 119.99983 * 90.00352 * 5 4 3 11 11 O 1.21599 * 119.99919 * 356.75298 * 10 5 4 12 12 C 1.47531 * 120.00048 * 176.76150 * 10 5 4 13 13 C 1.39671 * 120.19933 * 57.52689 * 12 10 5 14 14 C 1.37827 * 119.91802 * 180.29742 * 13 12 10 15 15 C 1.38580 * 120.32587 * 359.70475 * 14 13 12 16 16 C 1.38027 * 120.39920 * 0.02562 * 15 14 13 17 17 C 1.38836 * 120.07383 * 0.02562 * 16 15 14 18 18 O 1.35512 * 120.16426 * 179.97438 * 17 16 15 19 19 C 1.34815 * 116.99978 * 4.51482 * 18 17 16 20 20 H 1.08004 * 120.00342 * 355.19720 * 19 18 17 21 21 C 1.38694 * 120.00496 * 175.19711 * 19 18 17 22 22 N 1.31520 * 120.00403 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 119.99721 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.47428 * 89.99975 * 23 21 19 25 25 H 1.48506 * 109.47169 * 210.00088 * 23 21 19 26 26 H 1.48501 * 109.46921 * 329.99487 * 23 21 19 27 27 H 1.08997 * 109.46936 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47462 * 300.00203 * 1 2 3 29 29 H 1.09001 * 109.46550 * 60.00324 * 1 2 3 30 30 H 1.09005 * 109.46918 * 59.99690 * 3 2 1 31 31 H 1.09001 * 109.46859 * 299.99928 * 3 2 1 32 32 H 1.08999 * 109.46785 * 304.99925 * 4 3 2 33 33 H 1.09004 * 109.47048 * 184.99995 * 4 3 2 34 34 H 1.08999 * 109.47753 * 27.22257 * 6 5 4 35 35 H 1.09004 * 109.47208 * 147.22498 * 6 5 4 36 36 H 1.08991 * 109.47330 * 185.00171 * 7 6 5 37 37 H 1.09006 * 109.47092 * 305.00590 * 7 6 5 38 38 H 1.09005 * 109.46629 * 60.00891 * 9 8 7 39 39 H 1.08999 * 109.46925 * 180.02562 * 9 8 7 40 40 H 1.08995 * 109.47843 * 300.00474 * 9 8 7 41 41 H 1.07993 * 120.03877 * 0.02562 * 13 12 10 42 42 H 1.08002 * 119.83839 * 179.72617 * 14 13 12 43 43 H 1.07997 * 119.79885 * 180.02562 * 15 14 13 44 44 H 1.07999 * 119.96591 * 180.02562 * 16 15 14 45 45 H 0.97001 * 119.99936 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9766 0.5641 -1.2509 6 6 4.1063 -0.8924 -1.3403 7 6 5.5422 -1.2984 -1.0023 8 8 5.8193 -0.9772 0.3623 9 6 7.1418 -1.3182 0.7827 10 6 4.2633 1.3330 -2.3200 11 8 4.0995 2.5367 -2.2647 12 6 4.7758 0.7145 -3.5575 13 6 4.0367 -0.2782 -4.2049 14 6 4.5238 -0.8565 -5.3573 15 6 5.7418 -0.4538 -5.8814 16 6 6.4805 0.5299 -5.2555 17 6 6.0061 1.1229 -4.0933 18 8 6.7301 2.0885 -3.4770 19 6 7.8583 2.4949 -4.0932 20 1 8.1894 2.0005 -4.9946 21 6 8.5938 3.5478 -3.5698 22 7 9.6941 3.9445 -4.1712 23 14 8.0217 4.4024 -2.0104 24 1 8.6153 3.7264 -0.8290 25 1 8.4543 5.8228 -2.0372 26 1 6.5405 4.3377 -1.9254 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 1.6885 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8508 0.5686 0.8427 33 1 3.9785 2.1767 0.0902 34 1 3.4204 -1.3622 -0.6354 35 1 3.8657 -1.2172 -2.3526 36 1 5.6620 -2.3709 -1.1547 37 1 6.2341 -0.7598 -1.6500 38 1 7.8671 -0.7803 0.1720 39 1 7.2726 -1.0433 1.8293 40 1 7.2945 -2.3912 0.6674 41 1 3.0868 -0.5953 -3.8007 42 1 3.9533 -1.6271 -5.8544 43 1 6.1152 -0.9124 -6.7851 44 1 7.4287 0.8387 -5.6703 45 1 10.2087 4.6806 -3.8049 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194155111.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:44 Heat of formation + Delta-G solvation = -111.682285 kcal Electronic energy + Delta-G solvation = -29027.305345 eV Core-core repulsion = 25011.942093 eV Total energy + Delta-G solvation = -4015.363252 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.12237 -38.74105 -37.68490 -37.52140 -36.56026 -35.01207 -32.47421 -31.55706 -30.13006 -29.30353 -28.56851 -26.43958 -25.99748 -25.36521 -23.86797 -22.86059 -22.01138 -21.30894 -19.18494 -18.02231 -17.43183 -16.81111 -16.63106 -16.27214 -15.88878 -15.65455 -15.48233 -15.09489 -14.91398 -14.55049 -14.52253 -14.04733 -13.89367 -13.80263 -13.36022 -13.09454 -12.78699 -12.44403 -12.34213 -12.16936 -12.00063 -11.88019 -11.75888 -11.69477 -11.39291 -11.22746 -11.21267 -10.88286 -10.85399 -10.68820 -10.17892 -9.76609 -9.62521 -9.52480 -9.13460 -8.92603 -8.43288 -8.21789 -7.50769 -6.48492 -4.15156 1.70135 2.14330 3.21117 3.25827 3.28108 3.42083 3.55316 3.78032 3.93301 4.27276 4.36788 4.68568 4.96551 5.05728 5.07343 5.17645 5.24408 5.31054 5.33570 5.37959 5.42653 5.43242 5.44296 5.51881 5.54590 5.59070 5.64522 5.71872 5.79532 5.81435 5.93389 6.05783 6.09320 6.09847 6.35521 6.52686 6.85096 6.87207 6.99011 7.10338 7.14179 7.26385 7.45807 7.65779 7.83362 7.93559 8.73642 8.86582 9.46842 10.57538 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.010687 B = 0.005157 C = 0.004653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2619.406159 B = 5428.058297 C = 6015.653330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.387 6.387 3 C 0.045 3.955 4 C 0.124 3.876 5 N -0.601 5.601 6 C 0.113 3.887 7 C 0.041 3.959 8 O -0.387 6.387 9 C 0.032 3.968 10 C 0.576 3.424 11 O -0.528 6.528 12 C -0.211 4.211 13 C -0.051 4.051 14 C -0.212 4.212 15 C -0.058 4.058 16 C -0.222 4.222 17 C 0.195 3.805 18 O -0.193 6.193 19 C -0.393 4.393 20 H 0.109 0.891 21 C 0.072 3.928 22 N -0.872 5.872 23 Si 0.892 3.108 24 H -0.274 1.274 25 H -0.281 1.281 26 H -0.244 1.244 27 H 0.082 0.918 28 H 0.037 0.963 29 H 0.038 0.962 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.054 0.946 37 H 0.058 0.942 38 H 0.043 0.957 39 H 0.081 0.919 40 H 0.037 0.963 41 H 0.119 0.881 42 H 0.113 0.887 43 H 0.114 0.886 44 H 0.138 0.862 45 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.482 -12.315 7.204 18.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.306 6.306 3 C -0.032 4.032 4 C 0.001 3.999 5 N -0.334 5.334 6 C -0.011 4.011 7 C -0.037 4.037 8 O -0.306 6.306 9 C -0.065 4.065 10 C 0.365 3.635 11 O -0.404 6.404 12 C -0.215 4.215 13 C -0.069 4.069 14 C -0.231 4.231 15 C -0.076 4.076 16 C -0.241 4.241 17 C 0.140 3.860 18 O -0.096 6.096 19 C -0.468 4.468 20 H 0.126 0.874 21 C -0.133 4.133 22 N -0.508 5.508 23 Si 0.716 3.284 24 H -0.199 1.199 25 H -0.207 1.207 26 H -0.167 1.167 27 H 0.101 0.899 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.109 0.891 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.118 0.882 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.100 0.900 40 H 0.056 0.944 41 H 0.137 0.863 42 H 0.131 0.869 43 H 0.132 0.868 44 H 0.156 0.844 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.413 -11.415 7.578 18.488 hybrid contribution 0.137 0.452 0.290 0.554 sum -12.276 -10.963 7.868 18.242 Atomic orbital electron populations 1.22692 0.81667 1.02332 0.99736 1.87876 1.19151 1.28148 1.95398 1.23083 0.95019 0.84613 1.00528 1.21435 0.91019 1.00453 0.86982 1.47653 1.67571 1.06601 1.11587 1.21830 0.94962 0.80689 1.03570 1.23118 0.98212 0.98956 0.83432 1.87840 1.30861 1.84525 1.27395 1.22705 0.84546 0.98834 1.00390 1.18263 0.76067 0.86119 0.83005 1.90763 1.52029 1.14480 1.83125 1.18766 0.97075 1.05598 1.00068 1.20693 0.97768 0.93453 0.94998 1.20554 0.98445 1.04927 0.99151 1.20940 0.93849 0.94933 0.97892 1.21260 1.03221 1.01363 0.98262 1.18905 0.88931 0.88027 0.90180 1.83602 1.34323 1.46493 1.45138 1.20812 0.97564 1.17288 1.11163 0.87376 1.24436 0.94609 0.95386 0.98866 1.69624 1.14319 1.27343 1.39531 0.86338 0.81964 0.78282 0.81803 1.19930 1.20682 1.16667 0.89912 0.94422 0.94317 0.92766 0.92782 0.89064 0.88782 0.88986 0.88185 0.92775 0.92353 0.93834 0.90024 0.94434 0.86280 0.86887 0.86837 0.84441 0.90865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.39 -4.83 9.58 -35.23 -0.34 -5.16 16 3 C 0.05 0.59 6.28 37.16 0.23 0.83 16 4 C 0.12 1.89 5.62 -4.04 -0.02 1.86 16 5 N -0.60 -10.13 2.39 -174.91 -0.42 -10.55 16 6 C 0.11 1.56 5.33 -4.04 -0.02 1.54 16 7 C 0.04 0.58 6.24 37.16 0.23 0.81 16 8 O -0.39 -5.79 9.81 -35.23 -0.35 -6.14 16 9 C 0.03 0.40 11.01 101.05 1.11 1.51 16 10 C 0.58 12.03 6.75 -12.47 -0.08 11.95 16 11 O -0.53 -13.10 16.51 4.98 0.08 -13.01 16 12 C -0.21 -4.28 4.66 -104.81 -0.49 -4.76 16 13 C -0.05 -0.82 7.70 -39.20 -0.30 -1.12 16 14 C -0.21 -3.22 10.02 -39.61 -0.40 -3.62 16 15 C -0.06 -0.96 10.03 -39.53 -0.40 -1.36 16 16 C -0.22 -4.60 9.16 -39.44 -0.36 -4.96 16 17 C 0.20 4.53 6.66 -38.60 -0.26 4.27 16 18 O -0.19 -5.23 7.88 0.52 0.00 -5.23 16 19 C -0.39 -11.12 9.95 30.90 0.31 -10.81 16 20 H 0.11 3.05 5.43 -52.48 -0.29 2.77 16 21 C 0.07 2.05 5.49 -17.52 -0.10 1.95 16 22 N -0.87 -25.19 13.96 55.48 0.77 -24.42 16 23 Si 0.89 22.70 28.62 -169.99 -4.86 17.84 16 24 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.24 -6.62 7.11 56.52 0.40 -6.22 16 27 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.09 1.29 7.38 -51.93 -0.38 0.91 16 33 H 0.09 1.58 7.47 -51.93 -0.39 1.19 16 34 H 0.09 1.17 7.17 -51.93 -0.37 0.79 16 35 H 0.10 1.29 4.27 -51.93 -0.22 1.07 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 1.00 7.79 -51.93 -0.40 0.60 16 38 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.12 1.62 7.04 -52.49 -0.37 1.25 16 42 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 43 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 44 H 0.14 2.97 5.63 -52.49 -0.30 2.68 16 45 H 0.28 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 375.85 15.07 5.66 5.66 Total: -1.00 -33.28 375.85 -5.37 -38.66 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -6.50 Total: 2.85 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: 0.57 Total: -0.50 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: 0.36 Total: -34.96 kcal Atomic # 8 Polarization: -28.95 SS G_CDS: -0.60 Total: -29.54 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -4.86 Total: 17.84 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.28 -5.37 -38.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194155111.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.027 kcal (2) G-P(sol) polarization free energy of solvation -33.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds