Wall clock time and date at job start Tue Mar 31 2020 14:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42905 * 113.99946 * 2 1 4 4 C 1.53000 * 109.47234 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46739 * 65.00119 * 4 3 2 6 6 C 1.46495 * 119.99717 * 269.99750 * 5 4 3 7 7 C 1.53006 * 109.47353 * 267.21667 * 6 5 4 8 8 O 1.42906 * 109.46777 * 65.00097 * 7 6 5 9 9 C 1.42896 * 113.99844 * 179.97438 * 8 7 6 10 10 C 1.34775 * 119.99983 * 90.00352 * 5 4 3 11 11 O 1.21599 * 119.99919 * 356.75298 * 10 5 4 12 12 C 1.47531 * 120.00048 * 176.76150 * 10 5 4 13 13 C 1.39671 * 120.19933 * 57.52689 * 12 10 5 14 14 C 1.37827 * 119.91802 * 180.29742 * 13 12 10 15 15 C 1.38580 * 120.32587 * 359.70475 * 14 13 12 16 16 C 1.38027 * 120.39920 * 0.02562 * 15 14 13 17 17 C 1.38836 * 120.07383 * 0.02562 * 16 15 14 18 18 O 1.35512 * 120.16426 * 179.97438 * 17 16 15 19 19 C 1.34815 * 116.99978 * 4.51482 * 18 17 16 20 20 H 1.08004 * 120.00342 * 355.19720 * 19 18 17 21 21 C 1.38694 * 120.00496 * 175.19711 * 19 18 17 22 22 N 1.31520 * 120.00403 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 119.99721 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.47428 * 89.99975 * 23 21 19 25 25 H 1.48506 * 109.47169 * 210.00088 * 23 21 19 26 26 H 1.48501 * 109.46921 * 329.99487 * 23 21 19 27 27 H 1.08997 * 109.46936 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47462 * 300.00203 * 1 2 3 29 29 H 1.09001 * 109.46550 * 60.00324 * 1 2 3 30 30 H 1.09005 * 109.46918 * 59.99690 * 3 2 1 31 31 H 1.09001 * 109.46859 * 299.99928 * 3 2 1 32 32 H 1.08999 * 109.46785 * 304.99925 * 4 3 2 33 33 H 1.09004 * 109.47048 * 184.99995 * 4 3 2 34 34 H 1.08999 * 109.47753 * 27.22257 * 6 5 4 35 35 H 1.09004 * 109.47208 * 147.22498 * 6 5 4 36 36 H 1.08991 * 109.47330 * 185.00171 * 7 6 5 37 37 H 1.09006 * 109.47092 * 305.00590 * 7 6 5 38 38 H 1.09005 * 109.46629 * 60.00891 * 9 8 7 39 39 H 1.08999 * 109.46925 * 180.02562 * 9 8 7 40 40 H 1.08995 * 109.47843 * 300.00474 * 9 8 7 41 41 H 1.07993 * 120.03877 * 0.02562 * 13 12 10 42 42 H 1.08002 * 119.83839 * 179.72617 * 14 13 12 43 43 H 1.07997 * 119.79885 * 180.02562 * 15 14 13 44 44 H 1.07999 * 119.96591 * 180.02562 * 16 15 14 45 45 H 0.97001 * 119.99936 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9766 0.5641 -1.2509 6 6 4.1063 -0.8924 -1.3403 7 6 5.5422 -1.2984 -1.0023 8 8 5.8193 -0.9772 0.3623 9 6 7.1418 -1.3182 0.7827 10 6 4.2633 1.3330 -2.3200 11 8 4.0995 2.5367 -2.2647 12 6 4.7758 0.7145 -3.5575 13 6 4.0367 -0.2782 -4.2049 14 6 4.5238 -0.8565 -5.3573 15 6 5.7418 -0.4538 -5.8814 16 6 6.4805 0.5299 -5.2555 17 6 6.0061 1.1229 -4.0933 18 8 6.7301 2.0885 -3.4770 19 6 7.8583 2.4949 -4.0932 20 1 8.1894 2.0005 -4.9946 21 6 8.5938 3.5478 -3.5698 22 7 9.6941 3.9445 -4.1712 23 14 8.0217 4.4024 -2.0104 24 1 8.6153 3.7264 -0.8290 25 1 8.4543 5.8228 -2.0372 26 1 6.5405 4.3377 -1.9254 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 1.6885 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8508 0.5686 0.8427 33 1 3.9785 2.1767 0.0902 34 1 3.4204 -1.3622 -0.6354 35 1 3.8657 -1.2172 -2.3526 36 1 5.6620 -2.3709 -1.1547 37 1 6.2341 -0.7598 -1.6500 38 1 7.8671 -0.7803 0.1720 39 1 7.2726 -1.0433 1.8293 40 1 7.2945 -2.3912 0.6674 41 1 3.0868 -0.5953 -3.8007 42 1 3.9533 -1.6271 -5.8544 43 1 6.1152 -0.9124 -6.7851 44 1 7.4287 0.8387 -5.6703 45 1 10.2087 4.6806 -3.8049 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194155111.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:43 Heat of formation + Delta-G solvation = -135.091254 kcal Electronic energy + Delta-G solvation = -29028.320434 eV Core-core repulsion = 25011.942093 eV Total energy + Delta-G solvation = -4016.378341 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.66341 -40.30246 -38.79225 -38.70516 -38.17187 -36.40489 -34.54123 -32.86615 -31.44778 -30.87999 -29.77027 -27.43726 -27.25860 -26.98187 -25.23827 -24.04597 -23.45295 -22.83455 -20.67945 -19.91682 -18.99363 -18.26221 -17.91299 -17.30190 -17.08261 -16.99576 -16.55428 -16.52222 -16.37852 -16.00925 -15.73858 -15.63538 -15.51025 -15.29800 -14.90998 -14.51339 -14.30093 -14.12692 -13.80895 -13.58663 -13.15816 -13.06786 -12.94910 -12.86018 -12.81647 -12.72771 -12.59331 -12.35723 -12.20114 -12.14379 -11.89284 -11.54876 -10.99618 -10.87239 -10.65145 -10.56427 -9.90146 -9.60854 -9.16009 -8.59424 -6.28950 0.19824 0.61995 1.18908 1.22415 1.47354 1.65961 2.06072 2.21361 2.68973 2.84257 2.85558 2.94539 3.10815 3.59353 4.03059 4.03915 4.12329 4.19514 4.23240 4.28644 4.31832 4.40013 4.48317 4.51018 4.52805 4.55232 4.57941 4.60535 4.62068 4.65934 4.79493 4.81040 4.88637 4.89592 4.96058 5.06304 5.30167 5.47604 5.57208 5.63215 5.69132 5.83072 6.14053 6.14955 6.19269 6.42237 6.76908 7.18965 7.53648 8.51638 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.010687 B = 0.005157 C = 0.004653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2619.406159 B = 5428.058297 C = 6015.653330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.398 6.398 3 C 0.058 3.942 4 C 0.120 3.880 5 N -0.592 5.592 6 C 0.112 3.888 7 C 0.042 3.958 8 O -0.403 6.403 9 C 0.028 3.972 10 C 0.567 3.433 11 O -0.582 6.582 12 C -0.214 4.214 13 C -0.044 4.044 14 C -0.175 4.175 15 C -0.050 4.050 16 C -0.239 4.239 17 C 0.155 3.845 18 O -0.235 6.235 19 C -0.397 4.397 20 H 0.094 0.906 21 C 0.027 3.973 22 N -0.911 5.911 23 Si 0.946 3.054 24 H -0.266 1.266 25 H -0.262 1.262 26 H -0.277 1.277 27 H 0.103 0.897 28 H 0.049 0.951 29 H 0.038 0.962 30 H 0.077 0.923 31 H 0.035 0.965 32 H 0.105 0.895 33 H 0.068 0.932 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.087 0.913 37 H 0.020 0.980 38 H 0.020 0.980 39 H 0.098 0.902 40 H 0.062 0.938 41 H 0.158 0.842 42 H 0.168 0.832 43 H 0.152 0.848 44 H 0.116 0.884 45 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.533 -16.051 7.426 23.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.317 6.317 3 C -0.020 4.020 4 C -0.002 4.002 5 N -0.323 5.323 6 C -0.009 4.009 7 C -0.036 4.036 8 O -0.323 6.323 9 C -0.068 4.068 10 C 0.357 3.643 11 O -0.462 6.462 12 C -0.219 4.219 13 C -0.063 4.063 14 C -0.193 4.193 15 C -0.068 4.068 16 C -0.259 4.259 17 C 0.104 3.896 18 O -0.141 6.141 19 C -0.473 4.473 20 H 0.111 0.889 21 C -0.173 4.173 22 N -0.552 5.552 23 Si 0.770 3.230 24 H -0.191 1.191 25 H -0.186 1.186 26 H -0.203 1.203 27 H 0.122 0.878 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.095 0.905 31 H 0.053 0.947 32 H 0.123 0.877 33 H 0.086 0.914 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.105 0.895 37 H 0.039 0.961 38 H 0.039 0.961 39 H 0.116 0.884 40 H 0.080 0.920 41 H 0.176 0.824 42 H 0.186 0.814 43 H 0.170 0.830 44 H 0.134 0.866 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.493 -15.231 7.815 23.089 hybrid contribution 0.780 1.237 0.134 1.469 sum -14.713 -13.994 7.949 21.806 Atomic orbital electron populations 1.22903 0.79765 1.03911 1.00336 1.87828 1.21116 1.27248 1.95507 1.22822 0.93200 0.85259 1.00697 1.21521 0.92814 0.99325 0.86576 1.47735 1.65855 1.07826 1.10891 1.22086 0.95207 0.78582 1.05068 1.23122 0.97442 1.00331 0.82681 1.87807 1.31931 1.85075 1.27465 1.22844 0.83014 1.00104 1.00836 1.18518 0.75839 0.85728 0.84177 1.90730 1.54607 1.16730 1.84153 1.19085 0.96315 1.06246 1.00207 1.21186 0.98457 0.91700 0.94913 1.21209 0.97072 1.03705 0.97321 1.21399 0.93854 0.93023 0.98505 1.21310 1.03313 1.03027 0.98204 1.19532 0.90245 0.88136 0.91702 1.83569 1.34762 1.49353 1.46462 1.20787 0.98409 1.17253 1.10818 0.88903 1.24980 0.95046 0.96228 1.01075 1.69670 1.15563 1.28834 1.41098 0.85563 0.79105 0.78584 0.79764 1.19090 1.18649 1.20266 0.87844 0.93208 0.94379 0.90542 0.94691 0.87728 0.91387 0.86824 0.86711 0.89473 0.96111 0.96084 0.88373 0.91962 0.82430 0.81423 0.83025 0.86640 0.90458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 113.37 1.25 1.66 16 2 O -0.40 -8.76 9.58 -148.98 -1.43 -10.19 16 3 C 0.06 1.44 6.28 71.98 0.45 1.89 16 4 C 0.12 3.63 5.62 86.38 0.49 4.12 16 5 N -0.59 -19.62 2.39 -825.56 -1.97 -21.59 16 6 C 0.11 2.81 5.33 86.38 0.46 3.27 16 7 C 0.04 1.13 6.24 71.98 0.45 1.58 16 8 O -0.40 -11.56 9.81 -148.98 -1.46 -13.02 16 9 C 0.03 0.68 11.01 113.37 1.25 1.93 16 10 C 0.57 24.16 6.75 86.69 0.59 24.75 16 11 O -0.58 -30.40 16.51 -3.74 -0.06 -30.46 16 12 C -0.21 -8.62 4.66 -19.99 -0.09 -8.71 16 13 C -0.04 -1.27 7.70 22.52 0.17 -1.09 16 14 C -0.17 -4.30 10.02 22.25 0.22 -4.08 16 15 C -0.05 -1.49 10.03 22.30 0.22 -1.27 16 16 C -0.24 -10.05 9.16 22.36 0.20 -9.84 16 17 C 0.16 7.47 6.66 22.91 0.15 7.62 16 18 O -0.24 -13.65 7.88 -19.69 -0.16 -13.80 16 19 C -0.40 -24.06 9.95 67.93 0.68 -23.39 16 20 H 0.09 5.69 5.43 -2.91 -0.02 5.68 16 21 C 0.03 1.61 5.49 84.85 0.47 2.08 16 22 N -0.91 -55.46 13.96 21.62 0.30 -55.16 16 23 Si 0.95 49.98 28.62 68.60 1.96 51.94 16 24 H -0.27 -13.42 7.11 99.48 0.71 -12.72 16 25 H -0.26 -12.77 7.11 99.48 0.71 -12.06 16 26 H -0.28 -16.09 7.11 99.48 0.71 -15.38 16 27 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 31 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.10 2.85 7.38 -2.39 -0.02 2.83 16 33 H 0.07 2.41 7.47 -2.39 -0.02 2.39 16 34 H 0.11 2.43 7.17 -2.39 -0.02 2.41 16 35 H 0.12 2.47 4.27 -2.38 -0.01 2.46 16 36 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.02 0.72 7.79 -2.38 -0.02 0.70 16 38 H 0.02 0.58 8.14 -2.38 -0.02 0.57 16 39 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.16 3.35 7.04 -2.91 -0.02 3.32 16 42 H 0.17 2.55 8.06 -2.91 -0.02 2.52 16 43 H 0.15 3.43 8.06 -2.91 -0.02 3.40 16 44 H 0.12 5.31 5.63 -2.91 -0.02 5.29 16 45 H 0.29 16.01 8.31 -92.71 -0.77 15.24 16 Total: -1.00 -80.48 375.85 5.14 -75.34 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: 0.99 Total: 16.42 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: 6.96 Total: 0.52 kcal Atomic # 7 Polarization: -75.08 SS G_CDS: -1.67 Total: -76.75 kcal Atomic # 8 Polarization: -64.37 SS G_CDS: -3.11 Total: -67.48 kcal Atomic # 14 Polarization: 49.98 SS G_CDS: 1.96 Total: 51.94 kcal Total: -80.48 5.14 -75.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194155111.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.750 kcal (2) G-P(sol) polarization free energy of solvation -80.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds