Wall clock time and date at job start Tue Mar 31 2020 13:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46500 * 119.99588 * 2 1 4 4 C 1.50703 * 109.47212 * 269.99762 * 3 2 1 5 5 H 1.08000 * 119.99961 * 0.02562 * 4 3 2 6 6 C 1.37874 * 119.99980 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99789 * 180.02562 * 6 4 3 8 8 Si 1.86794 * 120.00218 * 0.02562 * 6 4 3 9 9 H 1.48505 * 109.47236 * 89.99840 * 8 6 4 10 10 H 1.48497 * 109.47426 * 210.00064 * 8 6 4 11 11 H 1.48500 * 109.47297 * 330.00047 * 8 6 4 12 12 C 1.34770 * 120.00156 * 180.02562 * 2 1 3 13 13 O 1.21583 * 120.00125 * 179.97438 * 12 2 1 14 14 N 1.34776 * 120.00152 * 0.02562 * 12 2 1 15 15 C 1.39009 * 120.00072 * 179.97438 * 14 12 2 16 16 N 1.28731 * 125.04502 * 0.03660 * 15 14 12 17 17 C 1.33641 * 117.64803 * 178.51248 * 16 15 14 18 18 C 1.33166 * 113.72655 * 4.48821 * 17 16 15 19 19 S 1.70554 * 125.04195 * 179.97438 * 15 14 12 20 20 C 1.51735 * 130.64633 * 175.10866 * 18 17 16 21 21 C 1.52578 * 112.54653 * 359.24749 * 20 18 17 22 22 C 1.51894 * 111.31953 * 79.58115 * 21 20 18 23 23 C 1.51559 * 113.22946 * 321.61077 * 22 21 20 24 24 C 1.53175 * 106.10323 * 276.57791 * 23 22 21 25 25 C 1.52233 * 120.44480 * 188.85488 * 17 16 15 26 26 H 1.08998 * 109.47045 * 269.99835 * 1 2 3 27 27 H 1.08997 * 109.47760 * 29.99823 * 1 2 3 28 28 H 1.09006 * 109.47222 * 149.99858 * 1 2 3 29 29 H 1.08993 * 109.47462 * 30.00297 * 3 2 1 30 30 H 1.09008 * 109.47026 * 150.00627 * 3 2 1 31 31 H 0.96998 * 120.00101 * 180.02562 * 7 6 4 32 32 H 0.97000 * 120.00170 * 359.97438 * 14 12 2 33 33 H 1.09011 * 108.86448 * 238.46008 * 20 18 17 34 34 H 1.09003 * 108.87107 * 120.04105 * 20 18 17 35 35 H 1.08996 * 109.10643 * 319.10985 * 21 20 18 36 36 H 1.09003 * 109.06067 * 200.02394 * 21 20 18 37 37 H 1.08995 * 108.73006 * 200.64290 * 22 21 20 38 38 H 1.09008 * 108.72998 * 82.58124 * 22 21 20 39 39 H 1.08993 * 110.12021 * 157.42677 * 23 22 21 40 40 H 1.09005 * 110.21641 * 35.77702 * 23 22 21 41 41 H 1.09002 * 109.59005 * 182.82328 * 24 23 22 42 42 H 1.08999 * 109.58839 * 303.11330 * 24 23 22 43 43 H 1.08999 * 109.90536 * 339.65307 * 25 17 16 44 44 H 1.09000 * 109.69113 * 218.91025 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0974 1.0962 -2.2417 6 6 3.1267 2.8775 -1.6727 7 7 3.3455 3.2574 -2.9127 8 14 3.7348 3.9281 -0.2530 9 1 5.1081 3.5059 0.1225 10 1 3.7506 5.3549 -0.6642 11 1 2.8291 3.7587 0.9116 12 6 2.1388 -1.1671 -0.0005 13 8 3.3547 -1.1671 -0.0010 14 7 1.4650 -2.3344 -0.0016 15 6 2.1601 -3.5382 -0.0026 16 7 3.4424 -3.6513 -0.0021 17 6 3.9561 -4.8847 0.0274 18 6 3.0400 -5.8486 -0.0426 19 16 1.4405 -5.0845 -0.0034 20 6 3.1954 -7.3549 -0.1384 21 6 4.6571 -7.7912 -0.1723 22 6 5.2656 -7.7921 1.2194 23 6 4.7964 -6.6344 2.0777 24 6 5.6830 -5.4423 1.7046 25 6 5.4501 -5.0934 0.2321 26 1 -0.3633 0.0000 1.0276 27 1 -0.3634 0.8899 -0.5138 28 1 -0.3634 -0.8900 -0.5139 29 1 1.6083 2.0284 0.5138 30 1 3.1499 1.1385 0.5138 31 1 3.8229 4.0829 -3.0900 32 1 0.4950 -2.3344 -0.0016 33 1 2.7024 -7.7031 -1.0461 34 1 2.7101 -7.8148 0.7226 35 1 5.2192 -7.1063 -0.8071 36 1 4.7189 -8.7964 -0.5895 37 1 6.3505 -7.7423 1.1270 38 1 5.0016 -8.7258 1.7162 39 1 4.9186 -6.8767 3.1333 40 1 3.7521 -6.4063 1.8643 41 1 5.4257 -4.5862 2.3282 42 1 6.7302 -5.7039 1.8569 43 1 5.9902 -4.1806 -0.0193 44 1 5.7965 -5.9118 -0.3990 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194510190.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:27 Heat of formation + Delta-G solvation = 37.874919 kcal Electronic energy + Delta-G solvation = -25435.471362 eV Core-core repulsion = 21901.639019 eV Total energy + Delta-G solvation = -3533.832343 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.59931 -39.60289 -37.43063 -35.04367 -34.43017 -33.00527 -32.46950 -30.66224 -28.49250 -27.52974 -26.40257 -25.73194 -24.08196 -22.33379 -21.38140 -20.84704 -20.04621 -18.58065 -17.90447 -17.11468 -16.96829 -16.41079 -16.08865 -15.40707 -15.19035 -14.86130 -14.28684 -14.21390 -13.95199 -13.61506 -13.35333 -13.19078 -12.97872 -12.69572 -12.42365 -12.20221 -12.12310 -12.02934 -11.65232 -11.51510 -11.44697 -11.38680 -10.96270 -10.88086 -10.55808 -10.52038 -10.25623 -10.07655 -9.93670 -9.79349 -9.50600 -9.00742 -8.91180 -8.57572 -8.01964 -7.67800 -6.07325 -4.06308 0.93931 1.06085 1.69170 2.90787 2.99449 3.30943 3.36633 3.39103 3.86827 4.12119 4.40813 4.55402 4.63044 4.64391 4.71202 4.87295 4.97232 5.12092 5.24679 5.26138 5.36739 5.39622 5.49905 5.58751 5.61809 5.71495 5.78852 5.79467 5.87523 5.91901 6.00568 6.02717 6.07450 6.21580 6.27630 6.34471 6.40003 6.61107 6.81495 7.11520 7.33071 7.60886 8.02217 8.40389 8.48518 8.95626 9.12396 9.52464 11.06170 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.019926 B = 0.003210 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.869424 B = 8719.905115 C = 9449.389553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.607 5.607 3 C 0.232 3.768 4 C -0.530 4.530 5 H 0.074 0.926 6 C 0.073 3.927 7 N -0.897 5.897 8 Si 0.877 3.123 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.693 3.307 13 O -0.519 6.519 14 N -0.649 5.649 15 C 0.321 3.679 16 N -0.476 5.476 17 C 0.110 3.890 18 C -0.228 4.228 19 S 0.051 5.949 20 C -0.030 4.030 21 C -0.124 4.124 22 C -0.118 4.118 23 C -0.133 4.133 24 C -0.114 4.114 25 C -0.055 4.055 26 H 0.048 0.952 27 H 0.083 0.917 28 H 0.051 0.949 29 H 0.034 0.966 30 H 0.039 0.961 31 H 0.265 0.735 32 H 0.412 0.588 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.054 0.946 39 H 0.061 0.939 40 H 0.080 0.920 41 H 0.062 0.938 42 H 0.070 0.930 43 H 0.085 0.915 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.783 -23.176 9.273 25.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.344 5.344 3 C 0.111 3.889 4 C -0.569 4.569 5 H 0.092 0.908 6 C -0.130 4.130 7 N -0.536 5.536 8 Si 0.704 3.296 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.190 1.190 12 C 0.392 3.608 13 O -0.389 6.389 14 N -0.305 5.305 15 C -0.052 4.052 16 N -0.197 5.197 17 C -0.019 4.019 18 C -0.349 4.349 19 S 0.303 5.697 20 C -0.070 4.070 21 C -0.162 4.162 22 C -0.156 4.156 23 C -0.171 4.171 24 C -0.152 4.152 25 C -0.095 4.095 26 H 0.066 0.934 27 H 0.102 0.898 28 H 0.070 0.930 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.251 0.749 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.098 0.902 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.103 0.897 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.571 -22.681 9.173 24.725 hybrid contribution 0.373 0.762 0.396 0.936 sum -3.198 -21.919 9.569 24.130 Atomic orbital electron populations 1.21650 0.81198 1.02885 1.00521 1.47151 1.05789 1.05432 1.75992 1.19634 0.92284 0.78503 0.98432 1.21345 1.37103 1.07148 0.91298 0.90791 1.24846 0.95186 0.97340 0.95611 1.69898 1.41405 1.23574 1.18677 0.86843 0.80244 0.79692 0.82847 1.19826 1.21072 1.19045 1.15911 0.85785 0.79663 0.79441 1.91027 1.10490 1.84373 1.52994 1.42626 1.09473 1.02014 1.76410 1.22759 0.91144 0.90590 1.00670 1.66598 1.08866 1.23837 1.20368 1.20556 0.97614 0.84893 0.98811 1.25293 0.91890 0.99855 1.17898 1.83932 1.11499 0.98617 1.75641 1.19927 0.97875 0.86990 1.02181 1.21547 0.95081 1.01592 0.98008 1.21138 1.00574 0.98518 0.95331 1.21678 1.01371 0.95149 0.98868 1.21661 0.99570 0.98490 0.95439 1.20882 0.88092 1.03182 0.97311 0.93393 0.89803 0.93039 0.94856 0.94322 0.92550 0.74925 0.90910 0.90873 0.90283 0.91305 0.91885 0.92725 0.92001 0.90196 0.91877 0.91187 0.89666 0.88946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.21 10.20 59.84 0.61 1.82 16 2 N -0.61 -12.74 2.86 -188.75 -0.54 -13.28 16 3 C 0.23 5.74 4.23 -5.19 -0.02 5.72 16 4 C -0.53 -15.46 9.94 -34.44 -0.34 -15.80 16 5 H 0.07 2.38 8.06 -52.49 -0.42 1.95 16 6 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 7 N -0.90 -28.01 13.96 55.43 0.77 -27.24 16 8 Si 0.88 21.76 27.47 -169.99 -4.67 17.09 16 9 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 12 C 0.69 15.21 8.24 -86.92 -0.72 14.49 16 13 O -0.52 -13.87 14.57 5.29 0.08 -13.79 16 14 N -0.65 -11.04 5.27 -17.76 -0.09 -11.13 16 15 C 0.32 5.46 8.00 -88.06 -0.70 4.76 16 16 N -0.48 -9.09 8.59 -10.78 -0.09 -9.18 16 17 C 0.11 1.65 5.60 -82.81 -0.46 1.19 16 18 C -0.23 -2.80 4.65 -35.56 -0.17 -2.96 16 19 S 0.05 0.63 23.12 -107.50 -2.49 -1.85 16 20 C -0.03 -0.26 5.21 -27.59 -0.14 -0.40 16 21 C -0.12 -0.93 5.39 -27.51 -0.15 -1.08 16 22 C -0.12 -0.88 5.11 -28.02 -0.14 -1.02 16 23 C -0.13 -1.24 5.70 -27.37 -0.16 -1.40 16 24 C -0.11 -1.23 5.55 -26.58 -0.15 -1.37 16 25 C -0.06 -0.69 5.63 -27.07 -0.15 -0.85 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.08 1.28 8.07 -51.93 -0.42 0.86 16 28 H 0.05 0.61 6.36 -51.93 -0.33 0.28 16 29 H 0.03 0.77 7.13 -51.93 -0.37 0.40 16 30 H 0.04 1.03 6.85 -51.92 -0.36 0.67 16 31 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 32 H 0.41 5.27 6.55 -40.82 -0.27 5.01 16 33 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 34 H 0.07 0.57 7.67 -51.93 -0.40 0.17 16 35 H 0.08 0.66 4.93 -51.93 -0.26 0.41 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.44 7.59 -51.93 -0.39 0.04 16 38 H 0.05 0.35 8.14 -51.92 -0.42 -0.07 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.08 0.86 4.40 -51.93 -0.23 0.63 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.07 0.63 7.87 -51.93 -0.41 0.22 16 43 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.09 0.94 4.50 -51.93 -0.23 0.71 16 LS Contribution 350.80 15.07 5.29 5.29 Total: -1.00 -36.70 350.80 -10.75 -47.45 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -6.21 Total: 1.50 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: -2.79 Total: 5.15 kcal Atomic # 7 Polarization: -60.87 SS G_CDS: 0.05 Total: -60.83 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: 0.08 Total: -13.79 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Atomic # 16 Polarization: 0.63 SS G_CDS: -2.49 Total: -1.85 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -36.70 -10.75 -47.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194510190.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.320 kcal (2) G-P(sol) polarization free energy of solvation -36.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds