Wall clock time and date at job start Tue Mar 31 2020 13:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46500 * 119.99588 * 2 1 4 4 C 1.50703 * 109.47212 * 269.99762 * 3 2 1 5 5 H 1.08000 * 119.99961 * 0.02562 * 4 3 2 6 6 C 1.37874 * 119.99980 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99789 * 180.02562 * 6 4 3 8 8 Si 1.86794 * 120.00218 * 0.02562 * 6 4 3 9 9 H 1.48505 * 109.47236 * 89.99840 * 8 6 4 10 10 H 1.48497 * 109.47426 * 210.00064 * 8 6 4 11 11 H 1.48500 * 109.47297 * 330.00047 * 8 6 4 12 12 C 1.34770 * 120.00156 * 180.02562 * 2 1 3 13 13 O 1.21583 * 120.00125 * 179.97438 * 12 2 1 14 14 N 1.34776 * 120.00152 * 0.02562 * 12 2 1 15 15 C 1.39009 * 120.00072 * 179.97438 * 14 12 2 16 16 N 1.28731 * 125.04502 * 0.03660 * 15 14 12 17 17 C 1.33641 * 117.64803 * 178.51248 * 16 15 14 18 18 C 1.33166 * 113.72655 * 4.48821 * 17 16 15 19 19 S 1.70554 * 125.04195 * 179.97438 * 15 14 12 20 20 C 1.51735 * 130.64633 * 175.10866 * 18 17 16 21 21 C 1.52578 * 112.54653 * 359.24749 * 20 18 17 22 22 C 1.51894 * 111.31953 * 79.58115 * 21 20 18 23 23 C 1.51559 * 113.22946 * 321.61077 * 22 21 20 24 24 C 1.53175 * 106.10323 * 276.57791 * 23 22 21 25 25 C 1.52233 * 120.44480 * 188.85488 * 17 16 15 26 26 H 1.08998 * 109.47045 * 269.99835 * 1 2 3 27 27 H 1.08997 * 109.47760 * 29.99823 * 1 2 3 28 28 H 1.09006 * 109.47222 * 149.99858 * 1 2 3 29 29 H 1.08993 * 109.47462 * 30.00297 * 3 2 1 30 30 H 1.09008 * 109.47026 * 150.00627 * 3 2 1 31 31 H 0.96998 * 120.00101 * 180.02562 * 7 6 4 32 32 H 0.97000 * 120.00170 * 359.97438 * 14 12 2 33 33 H 1.09011 * 108.86448 * 238.46008 * 20 18 17 34 34 H 1.09003 * 108.87107 * 120.04105 * 20 18 17 35 35 H 1.08996 * 109.10643 * 319.10985 * 21 20 18 36 36 H 1.09003 * 109.06067 * 200.02394 * 21 20 18 37 37 H 1.08995 * 108.73006 * 200.64290 * 22 21 20 38 38 H 1.09008 * 108.72998 * 82.58124 * 22 21 20 39 39 H 1.08993 * 110.12021 * 157.42677 * 23 22 21 40 40 H 1.09005 * 110.21641 * 35.77702 * 23 22 21 41 41 H 1.09002 * 109.59005 * 182.82328 * 24 23 22 42 42 H 1.08999 * 109.58839 * 303.11330 * 24 23 22 43 43 H 1.08999 * 109.90536 * 339.65307 * 25 17 16 44 44 H 1.09000 * 109.69113 * 218.91025 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0974 1.0962 -2.2417 6 6 3.1267 2.8775 -1.6727 7 7 3.3455 3.2574 -2.9127 8 14 3.7348 3.9281 -0.2530 9 1 5.1081 3.5059 0.1225 10 1 3.7506 5.3549 -0.6642 11 1 2.8291 3.7587 0.9116 12 6 2.1388 -1.1671 -0.0005 13 8 3.3547 -1.1671 -0.0010 14 7 1.4650 -2.3344 -0.0016 15 6 2.1601 -3.5382 -0.0026 16 7 3.4424 -3.6513 -0.0021 17 6 3.9561 -4.8847 0.0274 18 6 3.0400 -5.8486 -0.0426 19 16 1.4405 -5.0845 -0.0034 20 6 3.1954 -7.3549 -0.1384 21 6 4.6571 -7.7912 -0.1723 22 6 5.2656 -7.7921 1.2194 23 6 4.7964 -6.6344 2.0777 24 6 5.6830 -5.4423 1.7046 25 6 5.4501 -5.0934 0.2321 26 1 -0.3633 0.0000 1.0276 27 1 -0.3634 0.8899 -0.5138 28 1 -0.3634 -0.8900 -0.5139 29 1 1.6083 2.0284 0.5138 30 1 3.1499 1.1385 0.5138 31 1 3.8229 4.0829 -3.0900 32 1 0.4950 -2.3344 -0.0016 33 1 2.7024 -7.7031 -1.0461 34 1 2.7101 -7.8148 0.7226 35 1 5.2192 -7.1063 -0.8071 36 1 4.7189 -8.7964 -0.5895 37 1 6.3505 -7.7423 1.1270 38 1 5.0016 -8.7258 1.7162 39 1 4.9186 -6.8767 3.1333 40 1 3.7521 -6.4063 1.8643 41 1 5.4257 -4.5862 2.3282 42 1 6.7302 -5.7039 1.8569 43 1 5.9902 -4.1806 -0.0193 44 1 5.7965 -5.9118 -0.3990 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194510190.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:26 Heat of formation + Delta-G solvation = 13.241772 kcal Electronic energy + Delta-G solvation = -25436.539535 eV Core-core repulsion = 21901.639019 eV Total energy + Delta-G solvation = -3534.900516 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.85087 -40.92160 -38.46980 -36.70433 -35.92185 -34.61505 -33.80123 -31.71880 -30.37015 -28.36276 -27.69543 -26.86613 -25.54163 -23.93323 -22.34299 -22.04108 -21.04039 -19.93873 -19.17560 -19.10988 -18.38878 -17.49369 -17.21408 -16.76855 -16.59759 -16.17289 -15.85438 -15.26881 -15.16775 -14.99473 -14.69744 -14.46047 -14.03553 -13.92738 -13.87072 -13.71406 -13.30374 -13.02097 -12.89317 -12.87984 -12.52426 -12.46069 -12.33999 -12.13455 -12.05384 -11.76987 -11.58901 -11.45286 -11.40244 -11.25021 -10.84458 -10.70862 -10.23510 -10.05086 -9.55245 -8.99910 -8.35366 -6.40854 -0.19036 -0.06493 0.61853 1.31496 1.37425 1.44828 1.58155 1.75964 2.29803 2.30325 2.75662 2.99379 3.51415 3.80627 3.94846 4.00732 4.07081 4.10260 4.21409 4.32725 4.48404 4.54437 4.58982 4.66074 4.76328 4.78825 4.83460 4.84503 4.89236 5.01280 5.05206 5.08733 5.14724 5.22355 5.32883 5.36644 5.40935 5.42503 5.47868 5.56783 5.64653 5.69449 6.22727 6.59953 6.67665 7.07768 7.21131 7.53016 8.81977 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.019926 B = 0.003210 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.869424 B = 8719.905115 C = 9449.389553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.615 5.615 3 C 0.242 3.758 4 C -0.538 4.538 5 H 0.025 0.975 6 C 0.010 3.990 7 N -0.946 5.946 8 Si 0.950 3.050 9 H -0.280 1.280 10 H -0.273 1.273 11 H -0.233 1.233 12 C 0.689 3.311 13 O -0.582 6.582 14 N -0.636 5.636 15 C 0.270 3.730 16 N -0.529 5.529 17 C 0.073 3.927 18 C -0.209 4.209 19 S 0.138 5.862 20 C -0.033 4.033 21 C -0.122 4.122 22 C -0.116 4.116 23 C -0.128 4.128 24 C -0.110 4.110 25 C -0.054 4.054 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.062 0.938 30 H 0.017 0.983 31 H 0.269 0.731 32 H 0.431 0.569 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.067 0.933 36 H 0.095 0.905 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.031 0.969 42 H 0.088 0.912 43 H 0.049 0.951 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.324 -25.978 11.161 28.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.351 5.351 3 C 0.119 3.881 4 C -0.577 4.577 5 H 0.043 0.957 6 C -0.188 4.188 7 N -0.586 5.586 8 Si 0.773 3.227 9 H -0.206 1.206 10 H -0.198 1.198 11 H -0.156 1.156 12 C 0.388 3.612 13 O -0.456 6.456 14 N -0.293 5.293 15 C -0.101 4.101 16 N -0.251 5.251 17 C -0.054 4.054 18 C -0.330 4.330 19 S 0.390 5.610 20 C -0.073 4.073 21 C -0.161 4.161 22 C -0.153 4.153 23 C -0.166 4.166 24 C -0.148 4.148 25 C -0.093 4.093 26 H 0.104 0.896 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.079 0.921 30 H 0.035 0.965 31 H 0.078 0.922 32 H 0.273 0.727 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.085 0.915 36 H 0.113 0.887 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.050 0.950 42 H 0.107 0.893 43 H 0.068 0.932 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.212 -25.537 11.071 28.318 hybrid contribution 0.807 1.423 -0.279 1.659 sum -4.405 -24.114 10.792 26.784 Atomic orbital electron populations 1.22005 0.77394 1.04128 1.03320 1.47136 1.08143 1.04099 1.75706 1.19302 0.92549 0.80875 0.95327 1.21571 1.37006 1.06696 0.92403 0.95686 1.25873 0.95173 0.98962 0.98768 1.70055 1.42657 1.24537 1.21391 0.85683 0.79521 0.77688 0.79825 1.20554 1.19779 1.15618 1.16144 0.85301 0.80922 0.78820 1.90974 1.13299 1.85631 1.55707 1.42171 1.10090 1.00959 1.76119 1.23067 0.91782 0.92126 1.03099 1.66525 1.10942 1.26924 1.20717 1.20797 0.98872 0.84411 1.01353 1.25976 0.91718 1.01584 1.13735 1.83504 1.09807 0.94032 1.73621 1.20189 0.99326 0.83986 1.03843 1.21564 0.93894 1.02650 0.97968 1.21117 1.01020 0.98192 0.94987 1.21634 0.99952 0.94997 0.99977 1.21663 1.01177 0.98248 0.93681 1.20955 0.86973 1.02408 0.98989 0.89628 0.90348 0.90158 0.92057 0.96451 0.92227 0.72693 0.89149 0.88891 0.91524 0.88672 0.91150 0.90849 0.91018 0.91647 0.95041 0.89330 0.93240 0.86380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.07 10.20 127.77 1.30 3.37 16 2 N -0.61 -26.14 2.86 -869.33 -2.48 -28.62 16 3 C 0.24 12.15 4.23 85.63 0.36 12.52 16 4 C -0.54 -32.69 9.94 25.60 0.25 -32.43 16 5 H 0.02 1.71 8.06 -2.91 -0.02 1.68 16 6 C 0.01 0.61 5.47 84.65 0.46 1.08 16 7 N -0.95 -61.35 13.96 21.45 0.30 -61.05 16 8 Si 0.95 45.47 27.47 68.60 1.88 47.35 16 9 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 10 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 11 H -0.23 -9.86 6.54 99.48 0.65 -9.21 16 12 C 0.69 31.40 8.24 179.06 1.48 32.88 16 13 O -0.58 -33.12 14.57 -3.98 -0.06 -33.18 16 14 N -0.64 -21.85 5.27 -328.36 -1.73 -23.58 16 15 C 0.27 9.32 8.00 179.45 1.44 10.75 16 16 N -0.53 -21.24 8.59 -188.03 -1.61 -22.86 16 17 C 0.07 2.24 5.60 41.63 0.23 2.48 16 18 C -0.21 -4.77 4.65 24.87 0.12 -4.65 16 19 S 0.14 3.11 23.12 -56.49 -1.31 1.81 16 20 C -0.03 -0.46 5.21 30.04 0.16 -0.30 16 21 C -0.12 -1.40 5.39 30.09 0.16 -1.24 16 22 C -0.12 -1.32 5.11 29.76 0.15 -1.17 16 23 C -0.13 -2.15 5.70 30.18 0.17 -1.98 16 24 C -0.11 -2.40 5.55 30.69 0.17 -2.23 16 25 C -0.05 -1.41 5.63 30.38 0.17 -1.24 16 26 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.08 2.31 8.07 -2.39 -0.02 2.29 16 28 H 0.08 1.76 6.36 -2.38 -0.02 1.74 16 29 H 0.06 2.74 7.13 -2.39 -0.02 2.72 16 30 H 0.02 0.95 6.85 -2.38 -0.02 0.93 16 31 H 0.27 16.14 8.31 -92.71 -0.77 15.37 16 32 H 0.43 10.54 6.55 -92.71 -0.61 9.93 16 33 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 34 H 0.09 1.00 7.67 -2.39 -0.02 0.98 16 35 H 0.07 0.95 4.93 -2.39 -0.01 0.94 16 36 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.07 0.74 7.59 -2.39 -0.02 0.72 16 38 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 39 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.07 1.28 4.40 -2.38 -0.01 1.27 16 41 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.09 1.55 7.87 -2.39 -0.02 1.53 16 43 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.12 2.38 4.50 -2.39 -0.01 2.37 16 Total: -1.00 -88.17 350.80 1.99 -86.18 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: 0.37 Total: 16.14 kcal Atomic # 6 Polarization: 11.19 SS G_CDS: 6.63 Total: 17.81 kcal Atomic # 7 Polarization: -130.58 SS G_CDS: -5.53 Total: -136.11 kcal Atomic # 8 Polarization: -33.12 SS G_CDS: -0.06 Total: -33.18 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 1.88 Total: 47.35 kcal Atomic # 16 Polarization: 3.11 SS G_CDS: -1.31 Total: 1.81 kcal Total: -88.17 1.99 -86.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194510190.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.422 kcal (2) G-P(sol) polarization free energy of solvation -88.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds