Wall clock time and date at job start Tue Mar 31 2020 13:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45208 * 109.47067 * 2 1 4 4 C 1.34708 * 116.99520 * 180.02562 * 3 2 1 5 5 O 1.21469 * 120.00501 * 359.97438 * 4 3 2 6 6 C 1.47740 * 119.99530 * 179.97438 * 4 3 2 7 7 C 1.39654 * 120.12518 * 359.97438 * 6 4 3 8 8 C 1.37953 * 119.96143 * 180.02562 * 7 6 4 9 9 C 1.38295 * 120.21388 * 359.72037 * 8 7 6 10 10 C 1.38821 * 120.24552 * 0.55708 * 9 8 7 11 11 O 1.35914 * 119.98222 * 179.72548 * 10 9 8 12 12 C 1.42903 * 116.99882 * 359.71660 * 11 10 9 13 13 C 1.52996 * 109.46812 * 180.02562 * 12 11 10 14 14 H 1.08999 * 109.47456 * 55.00672 * 13 12 11 15 15 O 1.42896 * 109.47379 * 295.00331 * 13 12 11 16 16 C 1.53005 * 109.46803 * 175.00308 * 13 12 11 17 17 N 1.46503 * 109.47132 * 185.00003 * 16 13 12 18 18 C 1.46508 * 119.99789 * 90.00008 * 17 16 13 19 19 C 1.36932 * 120.00231 * 269.99941 * 17 16 13 20 20 H 1.08001 * 119.99995 * 22.93511 * 19 17 16 21 21 C 1.38807 * 120.00142 * 202.93000 * 19 17 16 22 22 N 1.31612 * 120.00157 * 13.11330 * 21 19 17 23 23 Si 1.86808 * 120.00095 * 193.11478 * 21 19 17 24 24 H 1.48498 * 109.46945 * 59.99626 * 23 21 19 25 25 H 1.48494 * 109.47244 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.46902 * 300.00065 * 23 21 19 27 27 C 1.38479 * 120.03467 * 359.44157 * 10 9 8 28 28 H 1.09002 * 109.47256 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.47019 * 300.00469 * 1 2 3 30 30 H 1.09001 * 109.47310 * 59.99713 * 1 2 3 31 31 H 1.08997 * 109.47006 * 240.00052 * 2 1 3 32 32 H 1.08997 * 109.47178 * 119.99547 * 2 1 3 33 33 H 1.07996 * 120.01841 * 359.97438 * 7 6 4 34 34 H 1.07998 * 119.89173 * 179.97438 * 8 7 6 35 35 H 1.07998 * 119.88173 * 180.27472 * 9 8 7 36 36 H 1.09000 * 109.46415 * 60.00660 * 12 11 10 37 37 H 1.08999 * 109.47520 * 300.00582 * 12 11 10 38 38 H 0.96707 * 114.00062 * 299.99836 * 15 13 12 39 39 H 1.08993 * 109.47352 * 305.00075 * 16 13 12 40 40 H 1.08996 * 109.47365 * 65.00074 * 16 13 12 41 41 H 1.08999 * 109.46642 * 95.12474 * 18 17 16 42 42 H 1.08997 * 109.46753 * 215.12420 * 18 17 16 43 43 H 1.09003 * 109.47103 * 335.12820 * 18 17 16 44 44 H 0.97007 * 120.00445 * 179.97438 * 22 21 19 45 45 H 1.08006 * 120.10707 * 180.25566 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3495 1.5454 -0.0005 5 8 4.0894 0.5821 -0.0005 6 6 3.9142 2.9107 -0.0011 7 6 3.0659 4.0200 -0.0017 8 6 3.5968 5.2933 -0.0028 9 6 4.9676 5.4757 0.0025 10 6 5.8190 4.3792 -0.0027 11 8 7.1654 4.5647 -0.0032 12 6 7.6343 5.9147 -0.0043 13 6 9.1642 5.9230 -0.0053 14 1 9.5303 5.3351 -0.8470 15 8 9.6445 5.3570 1.2158 16 6 9.6662 7.3628 -0.1322 17 7 11.1262 7.3621 -0.2532 18 6 11.7516 7.2869 -1.5760 19 6 11.9064 7.4316 0.8700 20 1 11.5078 7.1210 1.8245 21 6 13.2096 7.9013 0.7818 22 7 13.6151 8.5165 -0.3087 23 14 14.3881 7.6602 2.2111 24 1 14.5472 6.2088 2.4820 25 1 15.7080 8.2482 1.8690 26 1 13.8453 8.3325 3.4189 27 6 5.2971 3.0965 -0.0016 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 1.9949 3.8812 -0.0021 34 1 2.9397 6.1504 -0.0037 35 1 5.3775 6.4749 0.0061 36 1 7.2683 6.4270 0.8854 37 1 7.2679 6.4258 -0.8946 38 1 9.3571 5.8304 2.0086 39 1 9.2285 7.8235 -1.0177 40 1 9.3753 7.9284 0.7529 41 1 11.9852 8.2927 -1.9250 42 1 12.6693 6.7024 -1.5112 43 1 11.0654 6.8097 -2.2757 44 1 14.5257 8.8450 -0.3702 45 1 5.9584 2.2426 -0.0015 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264263739.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:51 Heat of formation + Delta-G solvation = -123.131484 kcal Electronic energy + Delta-G solvation = -26366.421309 eV Core-core repulsion = 22350.561582 eV Total energy + Delta-G solvation = -4015.859727 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.93556 -40.04062 -38.01167 -36.93673 -36.62766 -34.71152 -32.33743 -31.63535 -31.37177 -30.58920 -29.28376 -26.22211 -25.72125 -25.02228 -23.19592 -22.65560 -22.11206 -20.90822 -20.56748 -18.82077 -17.57082 -16.98101 -16.89366 -16.48467 -16.27565 -16.20270 -16.01735 -15.16464 -14.85533 -14.58159 -14.32931 -14.24185 -13.82681 -13.76967 -13.33691 -13.18998 -13.03724 -12.90446 -12.62659 -12.27210 -12.19599 -12.04452 -11.91096 -11.41589 -11.20827 -10.99831 -10.91595 -10.83785 -10.80082 -10.69106 -10.44506 -10.38500 -9.98715 -9.93138 -9.54810 -9.40634 -8.50556 -8.45360 -6.73940 -5.70185 -3.16521 0.37534 1.14112 2.19819 2.26534 3.13902 3.41917 3.47325 3.49926 3.50261 4.26236 4.48628 4.51067 4.52242 4.55378 4.73559 4.81984 4.84476 4.86940 4.94810 5.01258 5.13896 5.20492 5.30659 5.33781 5.41222 5.45183 5.52951 5.59348 5.74464 5.83060 5.91465 5.96005 5.99370 6.06718 6.09430 6.33750 6.37797 6.63304 6.73113 7.28688 7.36322 7.43313 7.70785 7.85408 8.22811 8.41233 9.24209 9.86296 10.34207 11.35003 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.030780 B = 0.001959 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.468316 B =14288.804111 C =14657.832096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.353 6.353 4 C 0.512 3.488 5 O -0.501 6.501 6 C -0.091 4.091 7 C -0.108 4.108 8 C -0.092 4.092 9 C -0.176 4.176 10 C 0.128 3.872 11 O -0.298 6.298 12 C 0.026 3.974 13 C 0.086 3.914 14 H 0.098 0.902 15 O -0.538 6.538 16 C 0.128 3.872 17 N -0.590 5.590 18 C 0.160 3.840 19 C -0.246 4.246 20 H 0.070 0.930 21 C -0.001 4.001 22 N -0.911 5.911 23 Si 0.906 3.094 24 H -0.284 1.284 25 H -0.292 1.292 26 H -0.284 1.284 27 C -0.091 4.091 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.137 0.863 34 H 0.134 0.866 35 H 0.137 0.863 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.364 0.636 39 H 0.046 0.954 40 H 0.054 0.946 41 H 0.033 0.967 42 H 0.042 0.958 43 H -0.003 1.003 44 H 0.252 0.748 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.463 -9.447 -0.656 29.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.012 4.012 3 O -0.270 6.270 4 C 0.357 3.643 5 O -0.390 6.390 6 C -0.092 4.092 7 C -0.126 4.126 8 C -0.110 4.110 9 C -0.195 4.195 10 C 0.081 3.919 11 O -0.211 6.211 12 C -0.050 4.050 13 C 0.023 3.977 14 H 0.116 0.884 15 O -0.342 6.342 16 C -0.001 4.001 17 N -0.312 5.312 18 C 0.016 3.984 19 C -0.375 4.375 20 H 0.088 0.912 21 C -0.199 4.199 22 N -0.556 5.556 23 Si 0.736 3.264 24 H -0.210 1.210 25 H -0.218 1.218 26 H -0.210 1.210 27 C -0.110 4.110 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.155 0.845 34 H 0.152 0.848 35 H 0.154 0.846 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.209 0.791 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.052 0.948 42 H 0.061 0.939 43 H 0.015 0.985 44 H 0.062 0.938 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -26.608 -10.239 -1.131 28.532 hybrid contribution 0.354 0.343 1.020 1.133 sum -26.254 -9.895 -0.112 28.057 Atomic orbital electron populations 1.21814 0.92419 1.03103 1.03615 1.23073 0.95420 0.79824 1.02872 1.86533 1.23650 1.32591 1.84270 1.21099 0.80626 0.89768 0.72835 1.90858 1.60369 1.42416 1.45341 1.18742 0.92938 0.90090 1.07428 1.21294 1.00116 0.91438 0.99748 1.20940 0.94427 0.97171 0.98452 1.21637 0.94376 0.98855 1.04628 1.18897 0.83924 0.93248 0.95781 1.86273 1.17253 1.30005 1.87593 1.23954 0.98551 0.80983 1.01546 1.23092 0.86395 0.99360 0.88862 0.88364 1.86674 1.76488 1.56273 1.14717 1.21249 0.87055 0.91844 0.99944 1.43741 0.98597 1.84930 1.03892 1.20846 0.94570 0.99244 0.83782 1.19133 0.94434 1.35852 0.88096 0.91235 1.25015 0.98866 0.98549 0.97444 1.70056 1.17329 1.40642 1.27596 0.86309 0.80305 0.77941 0.81805 1.21023 1.21766 1.21023 1.20458 0.93431 0.96174 1.00922 0.90099 0.91386 0.91384 0.91025 0.91021 0.84477 0.84828 0.84567 0.91797 0.91311 0.79067 0.93530 0.92783 0.94836 0.93906 0.98457 0.93769 0.83652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 10.29 37.16 0.38 -0.31 16 2 C 0.06 0.45 6.19 37.16 0.23 0.68 16 3 O -0.35 -3.42 9.47 -40.51 -0.38 -3.80 16 4 C 0.51 6.09 7.90 34.61 0.27 6.36 16 5 O -0.50 -7.26 16.13 -19.24 -0.31 -7.57 16 6 C -0.09 -1.03 5.87 -105.00 -0.62 -1.65 16 7 C -0.11 -0.97 9.61 -39.16 -0.38 -1.35 16 8 C -0.09 -0.77 10.02 -39.66 -0.40 -1.17 16 9 C -0.18 -1.78 9.03 -39.35 -0.36 -2.13 16 10 C 0.13 1.62 6.68 -39.28 -0.26 1.36 16 11 O -0.30 -4.39 10.10 -24.33 -0.25 -4.64 16 12 C 0.03 0.33 4.37 37.16 0.16 0.50 16 13 C 0.09 1.46 3.49 -26.73 -0.09 1.37 16 14 H 0.10 1.85 8.14 -51.93 -0.42 1.43 16 15 O -0.54 -10.19 12.54 -40.09 -0.50 -10.69 16 16 C 0.13 2.41 5.32 -4.04 -0.02 2.39 16 17 N -0.59 -14.52 2.90 -181.12 -0.53 -15.04 16 18 C 0.16 3.93 8.98 59.85 0.54 4.46 16 19 C -0.25 -6.67 9.21 -15.06 -0.14 -6.81 16 20 H 0.07 1.83 7.58 -52.49 -0.40 1.44 16 21 C 0.00 -0.03 5.10 -17.44 -0.09 -0.12 16 22 N -0.91 -26.63 10.71 55.49 0.59 -26.03 16 23 Si 0.91 22.15 29.57 -169.99 -5.03 17.13 16 24 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 26 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 27 C -0.09 -1.16 9.53 -39.01 -0.37 -1.54 16 28 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.07 0.30 8.14 -51.92 -0.42 -0.13 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.14 0.97 7.61 -52.49 -0.40 0.57 16 34 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 35 H 0.14 1.16 6.28 -52.49 -0.33 0.83 16 36 H 0.06 0.71 7.64 -51.93 -0.40 0.31 16 37 H 0.07 0.77 7.67 -51.93 -0.40 0.37 16 38 H 0.36 5.60 9.05 45.56 0.41 6.01 16 39 H 0.05 0.79 8.07 -51.93 -0.42 0.37 16 40 H 0.05 0.97 8.04 -51.93 -0.42 0.55 16 41 H 0.03 0.88 7.34 -51.93 -0.38 0.50 16 42 H 0.04 1.14 7.34 -51.93 -0.38 0.76 16 43 H 0.00 -0.07 8.03 -51.93 -0.42 -0.48 16 44 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 45 H 0.15 1.97 7.65 -52.48 -0.40 1.57 16 LS Contribution 381.87 15.07 5.75 5.75 Total: -1.00 -33.62 381.87 -7.80 -41.43 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -6.02 Total: 1.42 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -1.14 Total: 2.05 kcal Atomic # 7 Polarization: -41.14 SS G_CDS: 0.07 Total: -41.07 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: -1.44 Total: -26.70 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.03 Total: 17.13 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.62 -7.80 -41.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264263739.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.704 kcal (2) G-P(sol) polarization free energy of solvation -33.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds