Wall clock time and date at job start Tue Mar 31 2020 13:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45206 * 109.47090 * 2 1 4 4 C 1.34705 * 116.99911 * 180.02562 * 3 2 1 5 5 O 1.21466 * 120.00093 * 359.97438 * 4 3 2 6 6 C 1.47747 * 119.99777 * 180.02562 * 4 3 2 7 7 C 1.39650 * 120.12194 * 359.72414 * 6 4 3 8 8 C 1.37953 * 119.95787 * 179.76622 * 7 6 4 9 9 C 1.38289 * 120.21250 * 0.48496 * 8 7 6 10 10 C 1.38820 * 120.25072 * 359.77180 * 9 8 7 11 11 O 1.35906 * 119.98520 * 179.97438 * 10 9 8 12 12 C 1.42898 * 117.00046 * 0.02562 * 11 10 9 13 13 C 1.52998 * 109.47592 * 180.02562 * 12 11 10 14 14 H 1.09006 * 109.47149 * 305.00273 * 13 12 11 15 15 O 1.42898 * 109.47101 * 64.99900 * 13 12 11 16 16 C 1.52998 * 109.47528 * 185.00100 * 13 12 11 17 17 N 1.46503 * 109.47315 * 179.97438 * 16 13 12 18 18 C 1.46502 * 119.99943 * 89.99765 * 17 16 13 19 19 C 1.36940 * 119.99786 * 270.00314 * 17 16 13 20 20 H 1.07994 * 120.00550 * 23.18924 * 19 17 16 21 21 C 1.38809 * 119.99443 * 203.18448 * 19 17 16 22 22 N 1.31618 * 120.00432 * 13.71380 * 21 19 17 23 23 Si 1.86804 * 120.00035 * 193.71001 * 21 19 17 24 24 H 1.48497 * 109.47227 * 90.00390 * 23 21 19 25 25 H 1.48502 * 109.47392 * 210.00622 * 23 21 19 26 26 H 1.48506 * 109.46927 * 330.00167 * 23 21 19 27 27 C 1.38484 * 120.03361 * 359.97438 * 10 9 8 28 28 H 1.09003 * 109.46875 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47163 * 300.00116 * 1 2 3 30 30 H 1.08996 * 109.47136 * 59.99982 * 1 2 3 31 31 H 1.08996 * 109.47136 * 120.00018 * 2 1 3 32 32 H 1.09002 * 109.47163 * 239.99884 * 2 1 3 33 33 H 1.07994 * 120.02327 * 359.97438 * 7 6 4 34 34 H 1.08000 * 119.89379 * 180.21234 * 8 7 6 35 35 H 1.08000 * 119.87875 * 179.74210 * 9 8 7 36 36 H 1.09005 * 109.47347 * 300.00373 * 12 11 10 37 37 H 1.09002 * 109.47382 * 60.00476 * 12 11 10 38 38 H 0.96702 * 114.00079 * 60.00396 * 15 13 12 39 39 H 1.08993 * 109.47017 * 299.99930 * 16 13 12 40 40 H 1.09003 * 109.47207 * 60.00255 * 16 13 12 41 41 H 1.09001 * 109.46343 * 95.15894 * 18 17 16 42 42 H 1.08997 * 109.47391 * 215.16027 * 18 17 16 43 43 H 1.08995 * 109.47129 * 335.16232 * 18 17 16 44 44 H 0.96997 * 120.00638 * 179.97438 * 22 21 19 45 45 H 1.08003 * 120.10652 * 180.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3495 1.5455 -0.0005 5 8 4.0894 0.5822 -0.0005 6 6 3.9142 2.9108 0.0000 7 6 3.0658 4.0201 -0.0048 8 6 3.5967 5.2934 0.0006 9 6 4.9675 5.4758 0.0006 10 6 5.8189 4.3793 0.0000 11 8 7.1653 4.5649 -0.0006 12 6 7.6341 5.9147 0.0002 13 6 9.1641 5.9233 -0.0012 14 1 9.5315 5.3351 0.8398 15 8 9.6425 5.3576 -1.2232 16 6 9.6662 7.3630 0.1253 17 7 11.1312 7.3711 0.1246 18 6 11.8625 7.4866 -1.1396 19 6 11.8170 7.2706 1.3056 20 1 11.3455 6.8222 2.1675 21 6 13.1185 7.7450 1.3949 22 7 13.6011 8.5245 0.4505 23 14 14.1851 7.2773 2.8554 24 1 14.9258 6.0276 2.5475 25 1 15.1516 8.3700 3.1328 26 1 13.3256 7.0624 4.0473 27 6 5.2971 3.0966 -0.0001 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5138 0.8899 32 1 1.8934 -0.5139 -0.8900 33 1 1.9948 3.8813 -0.0092 34 1 2.9396 6.1505 0.0004 35 1 5.3773 6.4750 0.0007 36 1 7.2675 6.4273 -0.8893 37 1 7.2685 6.4259 0.8907 38 1 9.3538 5.8312 -2.0154 39 1 9.2989 7.9511 -0.7156 40 1 9.3014 7.7945 1.0574 41 1 12.1183 8.5312 -1.3171 42 1 12.7751 6.8929 -1.0871 43 1 11.2381 7.1217 -1.9551 44 1 14.5104 8.8563 0.5130 45 1 5.9584 2.2427 -0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264263757.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:54 Heat of formation + Delta-G solvation = -124.117992 kcal Electronic energy + Delta-G solvation = -26360.861968 eV Core-core repulsion = 22344.959463 eV Total energy + Delta-G solvation = -4015.902505 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.93338 -40.04032 -38.03250 -36.95454 -36.64856 -34.71387 -32.33513 -31.62437 -31.36163 -30.62222 -29.35964 -26.20545 -25.69095 -25.03353 -23.18911 -22.65385 -22.07313 -20.89621 -20.67575 -18.81912 -17.56583 -16.99984 -16.89084 -16.53082 -16.27189 -16.11689 -16.03569 -15.18230 -14.85169 -14.60687 -14.35112 -14.26472 -13.83370 -13.81462 -13.32754 -13.18086 -13.08478 -12.95726 -12.58900 -12.26482 -12.19648 -12.04031 -11.86207 -11.42080 -11.16717 -11.05225 -10.91352 -10.87667 -10.81026 -10.70361 -10.42886 -10.36587 -10.05565 -9.89975 -9.62186 -9.40351 -8.53542 -8.45002 -6.74356 -5.73497 -3.21144 0.37884 1.14431 2.20066 2.26853 3.14102 3.39319 3.45764 3.46199 3.50249 4.26491 4.47494 4.50150 4.51282 4.55560 4.73777 4.79231 4.84628 4.86734 4.94499 5.01135 5.14100 5.19670 5.30860 5.33993 5.40683 5.42082 5.53158 5.59847 5.72736 5.85834 5.91746 5.93373 5.99577 6.06869 6.09743 6.35618 6.46520 6.61980 6.80910 7.29042 7.42071 7.43610 7.71639 7.80261 8.14760 8.37876 9.21484 9.84018 10.32248 11.30532 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.026806 B = 0.001982 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.294088 B =14123.393448 C =14486.272397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.353 6.353 4 C 0.512 3.488 5 O -0.501 6.501 6 C -0.091 4.091 7 C -0.108 4.108 8 C -0.092 4.092 9 C -0.176 4.176 10 C 0.128 3.872 11 O -0.298 6.298 12 C 0.027 3.973 13 C 0.084 3.916 14 H 0.105 0.895 15 O -0.543 6.543 16 C 0.129 3.871 17 N -0.589 5.589 18 C 0.167 3.833 19 C -0.260 4.260 20 H 0.067 0.933 21 C 0.004 3.996 22 N -0.905 5.905 23 Si 0.905 3.095 24 H -0.287 1.287 25 H -0.291 1.291 26 H -0.279 1.279 27 C -0.091 4.091 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.137 0.863 34 H 0.134 0.866 35 H 0.137 0.863 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.361 0.639 39 H 0.041 0.959 40 H 0.058 0.942 41 H 0.028 0.972 42 H 0.039 0.961 43 H 0.002 0.998 44 H 0.253 0.747 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.225 -9.178 -2.998 28.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.012 4.012 3 O -0.270 6.270 4 C 0.357 3.643 5 O -0.390 6.390 6 C -0.092 4.092 7 C -0.126 4.126 8 C -0.110 4.110 9 C -0.195 4.195 10 C 0.082 3.918 11 O -0.211 6.211 12 C -0.050 4.050 13 C 0.022 3.978 14 H 0.122 0.878 15 O -0.346 6.346 16 C -0.001 4.001 17 N -0.310 5.310 18 C 0.022 3.978 19 C -0.389 4.389 20 H 0.085 0.915 21 C -0.194 4.194 22 N -0.550 5.550 23 Si 0.735 3.265 24 H -0.214 1.214 25 H -0.217 1.217 26 H -0.205 1.205 27 C -0.110 4.110 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.155 0.845 34 H 0.152 0.848 35 H 0.154 0.846 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.206 0.794 39 H 0.060 0.940 40 H 0.077 0.923 41 H 0.047 0.953 42 H 0.058 0.942 43 H 0.020 0.980 44 H 0.063 0.937 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -26.373 -9.958 -2.602 28.310 hybrid contribution 0.295 0.229 0.451 0.585 sum -26.078 -9.730 -2.151 27.917 Atomic orbital electron populations 1.21813 0.92420 1.03102 1.03613 1.23074 0.95417 0.79825 1.02872 1.86532 1.23655 1.32590 1.84269 1.21100 0.80624 0.89769 0.72835 1.90857 1.60371 1.42415 1.45340 1.18741 0.92938 0.90087 1.07426 1.21293 1.00114 0.91439 0.99756 1.20939 0.94426 0.97170 0.98454 1.21635 0.94377 0.98852 1.04638 1.18896 0.83920 0.93249 0.95772 1.86271 1.17258 1.29997 1.87586 1.23932 0.98479 0.80994 1.01552 1.23128 0.86495 0.99659 0.88560 0.87756 1.86683 1.76455 1.56606 1.14846 1.21221 0.87127 0.91614 1.00090 1.43696 0.98391 1.84873 1.04034 1.20778 0.93874 0.99192 0.83921 1.19168 0.96497 1.33190 0.90073 0.91493 1.25008 0.98815 0.97607 0.97993 1.70071 1.15979 1.34417 1.34483 0.86247 0.80439 0.77679 0.82104 1.21401 1.21739 1.20451 1.20458 0.93431 0.96175 1.00921 0.90101 0.91379 0.91391 0.91022 0.91025 0.84477 0.84829 0.84570 0.91936 0.91147 0.79362 0.94024 0.92342 0.95346 0.94212 0.97953 0.93708 0.83649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 10.29 37.16 0.38 -0.31 16 2 C 0.06 0.45 6.19 37.16 0.23 0.68 16 3 O -0.35 -3.43 9.47 -40.51 -0.38 -3.82 16 4 C 0.51 6.11 7.90 34.62 0.27 6.39 16 5 O -0.50 -7.29 16.13 -19.24 -0.31 -7.60 16 6 C -0.09 -1.04 5.87 -105.00 -0.62 -1.65 16 7 C -0.11 -0.98 9.61 -39.16 -0.38 -1.36 16 8 C -0.09 -0.78 10.02 -39.67 -0.40 -1.18 16 9 C -0.18 -1.79 9.03 -39.35 -0.36 -2.14 16 10 C 0.13 1.63 6.68 -39.28 -0.26 1.37 16 11 O -0.30 -4.41 10.10 -24.29 -0.25 -4.65 16 12 C 0.03 0.35 4.37 37.16 0.16 0.51 16 13 C 0.08 1.44 3.52 -26.73 -0.09 1.34 16 14 H 0.10 2.04 8.14 -51.93 -0.42 1.62 16 15 O -0.54 -9.81 12.11 -40.08 -0.49 -10.29 16 16 C 0.13 2.43 5.34 -4.04 -0.02 2.40 16 17 N -0.59 -14.52 2.84 -181.12 -0.52 -15.04 16 18 C 0.17 4.09 8.66 59.85 0.52 4.61 16 19 C -0.26 -7.11 9.65 -15.06 -0.15 -7.26 16 20 H 0.07 1.79 7.87 -52.49 -0.41 1.37 16 21 C 0.00 0.12 5.09 -17.43 -0.09 0.03 16 22 N -0.90 -26.44 10.76 55.49 0.60 -25.84 16 23 Si 0.91 22.03 29.58 -169.99 -5.03 17.00 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 27 C -0.09 -1.17 9.53 -39.01 -0.37 -1.54 16 28 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.14 0.97 7.61 -52.49 -0.40 0.57 16 34 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 35 H 0.14 1.16 6.28 -52.49 -0.33 0.83 16 36 H 0.06 0.68 7.66 -51.93 -0.40 0.28 16 37 H 0.07 0.81 7.66 -51.93 -0.40 0.41 16 38 H 0.36 5.12 8.80 45.56 0.40 5.52 16 39 H 0.04 0.70 8.07 -51.93 -0.42 0.28 16 40 H 0.06 1.07 8.04 -51.93 -0.42 0.65 16 41 H 0.03 0.75 7.33 -51.93 -0.38 0.37 16 42 H 0.04 1.07 7.37 -51.93 -0.38 0.69 16 43 H 0.00 0.04 7.00 -51.93 -0.36 -0.32 16 44 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 45 H 0.15 1.98 7.65 -52.48 -0.40 1.58 16 LS Contribution 380.62 15.07 5.74 5.74 Total: -1.00 -33.58 380.62 -7.79 -41.37 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -5.99 Total: 1.22 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -1.16 Total: 1.90 kcal Atomic # 7 Polarization: -40.96 SS G_CDS: 0.08 Total: -40.88 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -1.42 Total: -26.36 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.03 Total: 17.00 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.58 -7.79 -41.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264263757.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.743 kcal (2) G-P(sol) polarization free energy of solvation -33.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds