Wall clock time and date at job start Tue Mar 31 2020 13:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45206 * 109.47090 * 2 1 4 4 C 1.34705 * 116.99911 * 180.02562 * 3 2 1 5 5 O 1.21466 * 120.00093 * 359.97438 * 4 3 2 6 6 C 1.47747 * 119.99777 * 180.02562 * 4 3 2 7 7 C 1.39650 * 120.12194 * 359.72414 * 6 4 3 8 8 C 1.37953 * 119.95787 * 179.76622 * 7 6 4 9 9 C 1.38289 * 120.21250 * 0.48496 * 8 7 6 10 10 C 1.38820 * 120.25072 * 359.77180 * 9 8 7 11 11 O 1.35906 * 119.98520 * 179.97438 * 10 9 8 12 12 C 1.42898 * 117.00046 * 0.02562 * 11 10 9 13 13 C 1.52998 * 109.47592 * 180.02562 * 12 11 10 14 14 H 1.09006 * 109.47149 * 305.00273 * 13 12 11 15 15 O 1.42898 * 109.47101 * 64.99900 * 13 12 11 16 16 C 1.52998 * 109.47528 * 185.00100 * 13 12 11 17 17 N 1.46503 * 109.47315 * 179.97438 * 16 13 12 18 18 C 1.46502 * 119.99943 * 89.99765 * 17 16 13 19 19 C 1.36940 * 119.99786 * 270.00314 * 17 16 13 20 20 H 1.07994 * 120.00550 * 23.18924 * 19 17 16 21 21 C 1.38809 * 119.99443 * 203.18448 * 19 17 16 22 22 N 1.31618 * 120.00432 * 13.71380 * 21 19 17 23 23 Si 1.86804 * 120.00035 * 193.71001 * 21 19 17 24 24 H 1.48497 * 109.47227 * 90.00390 * 23 21 19 25 25 H 1.48502 * 109.47392 * 210.00622 * 23 21 19 26 26 H 1.48506 * 109.46927 * 330.00167 * 23 21 19 27 27 C 1.38484 * 120.03361 * 359.97438 * 10 9 8 28 28 H 1.09003 * 109.46875 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47163 * 300.00116 * 1 2 3 30 30 H 1.08996 * 109.47136 * 59.99982 * 1 2 3 31 31 H 1.08996 * 109.47136 * 120.00018 * 2 1 3 32 32 H 1.09002 * 109.47163 * 239.99884 * 2 1 3 33 33 H 1.07994 * 120.02327 * 359.97438 * 7 6 4 34 34 H 1.08000 * 119.89379 * 180.21234 * 8 7 6 35 35 H 1.08000 * 119.87875 * 179.74210 * 9 8 7 36 36 H 1.09005 * 109.47347 * 300.00373 * 12 11 10 37 37 H 1.09002 * 109.47382 * 60.00476 * 12 11 10 38 38 H 0.96702 * 114.00079 * 60.00396 * 15 13 12 39 39 H 1.08993 * 109.47017 * 299.99930 * 16 13 12 40 40 H 1.09003 * 109.47207 * 60.00255 * 16 13 12 41 41 H 1.09001 * 109.46343 * 95.15894 * 18 17 16 42 42 H 1.08997 * 109.47391 * 215.16027 * 18 17 16 43 43 H 1.08995 * 109.47129 * 335.16232 * 18 17 16 44 44 H 0.96997 * 120.00638 * 179.97438 * 22 21 19 45 45 H 1.08003 * 120.10652 * 180.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3495 1.5455 -0.0005 5 8 4.0894 0.5822 -0.0005 6 6 3.9142 2.9108 0.0000 7 6 3.0658 4.0201 -0.0048 8 6 3.5967 5.2934 0.0006 9 6 4.9675 5.4758 0.0006 10 6 5.8189 4.3793 0.0000 11 8 7.1653 4.5649 -0.0006 12 6 7.6341 5.9147 0.0002 13 6 9.1641 5.9233 -0.0012 14 1 9.5315 5.3351 0.8398 15 8 9.6425 5.3576 -1.2232 16 6 9.6662 7.3630 0.1253 17 7 11.1312 7.3711 0.1246 18 6 11.8625 7.4866 -1.1396 19 6 11.8170 7.2706 1.3056 20 1 11.3455 6.8222 2.1675 21 6 13.1185 7.7450 1.3949 22 7 13.6011 8.5245 0.4505 23 14 14.1851 7.2773 2.8554 24 1 14.9258 6.0276 2.5475 25 1 15.1516 8.3700 3.1328 26 1 13.3256 7.0624 4.0473 27 6 5.2971 3.0966 -0.0001 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5138 0.8899 32 1 1.8934 -0.5139 -0.8900 33 1 1.9948 3.8813 -0.0092 34 1 2.9396 6.1505 0.0004 35 1 5.3773 6.4750 0.0007 36 1 7.2675 6.4273 -0.8893 37 1 7.2685 6.4259 0.8907 38 1 9.3538 5.8312 -2.0154 39 1 9.2989 7.9511 -0.7156 40 1 9.3014 7.7945 1.0574 41 1 12.1183 8.5312 -1.3171 42 1 12.7751 6.8929 -1.0871 43 1 11.2381 7.1217 -1.9551 44 1 14.5104 8.8563 0.5130 45 1 5.9584 2.2427 -0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264263757.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:53 Heat of formation + Delta-G solvation = -146.038856 kcal Electronic energy + Delta-G solvation = -26361.812528 eV Core-core repulsion = 22344.959463 eV Total energy + Delta-G solvation = -4016.853065 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.80370 -40.97341 -39.18112 -38.07407 -37.64437 -36.47527 -33.34132 -32.95816 -32.28812 -31.69217 -30.58246 -27.93247 -27.32476 -25.94973 -24.05779 -23.47388 -23.34920 -22.28558 -21.79537 -19.73325 -18.83237 -18.41765 -17.75346 -17.67394 -17.35958 -17.12740 -16.89343 -16.75994 -16.32145 -15.78503 -15.43406 -15.20983 -15.04168 -14.94496 -14.66570 -14.59469 -14.06263 -13.75388 -13.61070 -13.45504 -13.02670 -12.95399 -12.94322 -12.82017 -12.58856 -12.54492 -12.29654 -12.21490 -12.01100 -11.96794 -11.89300 -11.78205 -11.62609 -11.57803 -11.10631 -10.58302 -10.20161 -9.32089 -8.73512 -7.82730 -5.31930 -0.46202 0.34384 1.39358 1.41521 1.44451 1.47382 1.54526 2.16640 2.51098 2.69261 3.29696 3.50428 3.56681 3.64630 3.75819 3.98662 3.99333 4.01787 4.05429 4.08527 4.16275 4.22470 4.33418 4.39142 4.44885 4.49514 4.52131 4.80213 4.83351 4.91538 4.93134 4.97205 5.08631 5.15944 5.19663 5.23619 5.31083 5.37056 5.39212 5.60831 5.62656 5.72823 6.31570 6.38339 6.56786 6.96844 7.15045 7.87387 8.29555 9.19021 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.026806 B = 0.001982 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.294088 B =14123.393448 C =14486.272397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.052 3.948 3 O -0.347 6.347 4 C 0.513 3.487 5 O -0.539 6.539 6 C -0.104 4.104 7 C -0.094 4.094 8 C -0.081 4.081 9 C -0.169 4.169 10 C 0.107 3.893 11 O -0.328 6.328 12 C 0.036 3.964 13 C 0.095 3.905 14 H 0.070 0.930 15 O -0.566 6.566 16 C 0.127 3.873 17 N -0.609 5.609 18 C 0.182 3.818 19 C -0.264 4.264 20 H 0.069 0.931 21 C -0.053 4.053 22 N -0.936 5.936 23 Si 0.964 3.036 24 H -0.292 1.292 25 H -0.292 1.292 26 H -0.267 1.267 27 C -0.115 4.115 28 H 0.100 0.900 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.163 0.837 34 H 0.174 0.826 35 H 0.159 0.841 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.378 0.622 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.005 0.995 42 H 0.002 0.998 43 H 0.038 0.962 44 H 0.248 0.752 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.735 -8.204 -2.891 31.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.021 4.021 3 O -0.264 6.264 4 C 0.359 3.641 5 O -0.430 6.430 6 C -0.106 4.106 7 C -0.112 4.112 8 C -0.099 4.099 9 C -0.188 4.188 10 C 0.062 3.938 11 O -0.242 6.242 12 C -0.039 4.039 13 C 0.033 3.967 14 H 0.088 0.912 15 O -0.372 6.372 16 C 0.000 4.000 17 N -0.331 5.331 18 C 0.037 3.963 19 C -0.394 4.394 20 H 0.086 0.914 21 C -0.248 4.248 22 N -0.582 5.582 23 Si 0.793 3.207 24 H -0.219 1.219 25 H -0.219 1.219 26 H -0.191 1.191 27 C -0.134 4.134 28 H 0.118 0.882 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.180 0.820 34 H 0.192 0.808 35 H 0.177 0.823 36 H 0.111 0.889 37 H 0.108 0.892 38 H 0.227 0.773 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.023 0.977 42 H 0.021 0.979 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -29.960 -8.988 -2.494 31.379 hybrid contribution 1.205 -0.135 0.375 1.269 sum -28.755 -9.123 -2.119 30.242 Atomic orbital electron populations 1.21829 0.89821 1.04516 1.04001 1.23380 0.97376 0.78715 1.02671 1.86528 1.22212 1.34030 1.83627 1.21315 0.81127 0.89725 0.71897 1.90834 1.61313 1.43592 1.47301 1.18812 0.92637 0.90663 1.08451 1.21638 1.01034 0.90940 0.97602 1.21400 0.94189 0.98030 0.96247 1.21935 0.94864 0.98813 1.03140 1.18999 0.83333 0.93936 0.97550 1.86187 1.18853 1.30757 1.88432 1.23725 0.95263 0.80953 1.03963 1.22681 0.89472 0.97230 0.87331 0.91202 1.86640 1.77247 1.57457 1.15903 1.21434 0.83796 0.93099 1.01678 1.43925 1.00903 1.85212 1.03093 1.20497 0.93275 0.97140 0.85343 1.19499 0.96966 1.31918 0.91050 0.91367 1.25742 1.00188 0.98248 1.00606 1.70217 1.15877 1.35905 1.36249 0.85309 0.78802 0.76795 0.79812 1.21938 1.21869 1.19115 1.20390 0.94088 0.95955 1.02928 0.88187 0.90971 0.90937 0.91345 0.91294 0.81984 0.80831 0.82346 0.88917 0.89173 0.77343 0.91085 0.91706 0.97697 0.97907 0.94317 0.94307 0.86108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 10.29 71.98 0.74 -0.28 16 2 C 0.05 0.72 6.19 71.98 0.45 1.17 16 3 O -0.35 -6.40 9.47 -56.15 -0.53 -6.93 16 4 C 0.51 12.32 7.90 70.34 0.56 12.88 16 5 O -0.54 -16.47 16.13 19.95 0.32 -16.15 16 6 C -0.10 -2.31 5.87 -20.11 -0.12 -2.43 16 7 C -0.09 -1.41 9.61 22.54 0.22 -1.20 16 8 C -0.08 -1.01 10.02 22.21 0.22 -0.78 16 9 C -0.17 -2.82 9.03 22.42 0.20 -2.62 16 10 C 0.11 2.62 6.68 22.47 0.15 2.77 16 11 O -0.33 -9.48 10.10 -87.86 -0.89 -10.37 16 12 C 0.04 0.86 4.37 71.98 0.31 1.17 16 13 C 0.10 3.13 3.52 30.59 0.11 3.24 16 14 H 0.07 2.77 8.14 -2.38 -0.02 2.75 16 15 O -0.57 -19.93 12.11 -144.34 -1.75 -21.68 16 16 C 0.13 4.56 5.34 86.38 0.46 5.02 16 17 N -0.61 -29.92 2.84 -726.95 -2.07 -31.98 16 18 C 0.18 9.01 8.66 127.77 1.11 10.11 16 19 C -0.26 -14.54 9.65 84.03 0.81 -13.73 16 20 H 0.07 3.65 7.87 -2.91 -0.02 3.63 16 21 C -0.05 -2.99 5.09 84.86 0.43 -2.56 16 22 N -0.94 -55.93 10.76 21.65 0.23 -55.70 16 23 Si 0.96 45.94 29.58 68.60 2.03 47.97 16 24 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 25 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 26 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 27 C -0.11 -3.01 9.53 22.64 0.22 -2.80 16 28 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.07 0.99 8.14 -2.39 -0.02 0.98 16 32 H 0.07 0.99 8.14 -2.39 -0.02 0.98 16 33 H 0.16 1.62 7.61 -2.91 -0.02 1.59 16 34 H 0.17 0.84 8.06 -2.91 -0.02 0.82 16 35 H 0.16 1.90 6.28 -2.91 -0.02 1.89 16 36 H 0.09 1.63 7.66 -2.38 -0.02 1.62 16 37 H 0.09 1.76 7.66 -2.39 -0.02 1.75 16 38 H 0.38 9.94 8.80 -74.06 -0.65 9.29 16 39 H 0.07 2.15 8.07 -2.39 -0.02 2.13 16 40 H 0.06 2.24 8.04 -2.39 -0.02 2.22 16 41 H 0.00 0.26 7.33 -2.39 -0.02 0.24 16 42 H 0.00 0.12 7.37 -2.39 -0.02 0.10 16 43 H 0.04 1.58 7.00 -2.39 -0.02 1.56 16 44 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 45 H 0.12 3.64 7.65 -2.91 -0.02 3.62 16 Total: -1.00 -76.18 380.62 3.56 -72.62 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: 0.35 Total: 12.25 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: 5.86 Total: 9.96 kcal Atomic # 7 Polarization: -85.85 SS G_CDS: -1.83 Total: -87.69 kcal Atomic # 8 Polarization: -52.27 SS G_CDS: -2.85 Total: -55.12 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -76.18 3.56 -72.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264263757.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.420 kcal (2) G-P(sol) polarization free energy of solvation -76.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds