Wall clock time and date at job start Tue Mar 31 2020 14:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42895 * 113.99825 * 2 1 4 4 C 1.53003 * 109.47078 * 179.97438 * 3 2 1 5 5 N 1.46901 * 109.46959 * 64.99702 * 4 3 2 6 6 C 1.46900 * 110.99946 * 66.04875 * 5 4 3 7 7 C 1.50700 * 109.47191 * 60.95104 * 6 5 4 8 8 O 1.20829 * 119.99910 * 2.16346 * 7 6 5 9 9 O 1.34228 * 119.99907 * 182.16740 * 7 6 5 10 10 C 1.45197 * 116.99786 * 179.97438 * 9 7 6 11 11 C 1.46906 * 111.00025 * 190.00286 * 5 4 3 12 12 C 1.50701 * 109.46916 * 164.10972 * 11 5 4 13 13 C 1.38304 * 119.92843 * 95.45248 * 12 11 5 14 14 C 1.38094 * 120.07074 * 179.97438 * 13 12 11 15 15 C 1.38880 * 119.92970 * 0.02562 * 14 13 12 16 16 O 1.35753 * 120.07111 * 180.02562 * 15 14 13 17 17 C 1.34829 * 117.00163 * 185.70070 * 16 15 14 18 18 H 1.08002 * 119.99621 * 354.89591 * 17 16 15 19 19 C 1.38653 * 119.99879 * 174.89567 * 17 16 15 20 20 N 1.31553 * 119.99995 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99953 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47199 * 89.99784 * 21 19 17 23 23 H 1.48501 * 109.47116 * 210.00276 * 21 19 17 24 24 H 1.48502 * 109.46855 * 330.00307 * 21 19 17 25 25 C 1.38886 * 119.86171 * 0.27375 * 15 14 13 26 26 C 1.38095 * 119.92618 * 359.44745 * 25 15 14 27 27 H 1.08996 * 109.47151 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46728 * 300.00522 * 1 2 3 29 29 H 1.08999 * 109.46974 * 59.99879 * 1 2 3 30 30 H 1.08998 * 109.47764 * 60.00138 * 3 2 1 31 31 H 1.09003 * 109.47245 * 299.99343 * 3 2 1 32 32 H 1.09000 * 109.47240 * 305.00032 * 4 3 2 33 33 H 1.08999 * 109.47113 * 184.99651 * 4 3 2 34 34 H 1.09003 * 109.46898 * 180.94701 * 6 5 4 35 35 H 1.08996 * 109.47172 * 300.94460 * 6 5 4 36 36 H 1.09006 * 109.47233 * 179.97438 * 10 9 7 37 37 H 1.09003 * 109.47208 * 299.99334 * 10 9 7 38 38 H 1.08996 * 109.47415 * 59.99735 * 10 9 7 39 39 H 1.09000 * 109.47039 * 44.11153 * 11 5 4 40 40 H 1.08998 * 109.46756 * 284.11367 * 11 5 4 41 41 H 1.08000 * 119.96552 * 359.97438 * 13 12 11 42 42 H 1.08001 * 120.03553 * 180.02562 * 14 13 12 43 43 H 0.97005 * 119.99727 * 179.97438 * 20 19 17 44 44 H 1.07995 * 120.03361 * 179.72671 * 25 15 14 45 45 H 1.07997 * 119.96507 * 180.27086 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9779 0.5622 -1.2543 6 6 3.6969 1.4346 -2.4023 7 6 4.4432 2.7338 -2.2404 8 8 5.1685 2.8994 -1.2883 9 8 4.3021 3.7071 -3.1539 10 6 5.0506 4.9316 -2.9334 11 6 5.4037 0.2132 -1.1948 12 6 5.7311 -0.7523 -2.3046 13 6 6.2438 -0.2817 -3.4998 14 6 6.5454 -1.1638 -4.5185 15 6 6.3329 -2.5249 -4.3421 16 8 6.6289 -3.3947 -5.3415 17 6 6.2894 -4.6854 -5.1502 18 1 5.8802 -5.0013 -4.2019 19 6 6.4655 -5.6072 -6.1708 20 7 6.9635 -5.2223 -7.3260 21 14 5.9958 -7.3957 -5.9055 22 1 4.5794 -7.5995 -6.3020 23 1 6.8713 -8.2652 -6.7318 24 1 6.1634 -7.7439 -4.4717 25 6 5.8121 -2.9938 -3.1430 26 6 5.5180 -2.1071 -2.1261 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.6887 1.8464 0.8899 31 1 1.6887 1.8463 -0.8901 32 1 3.8509 0.5685 0.8427 33 1 3.9785 2.1765 0.0901 34 1 4.0191 0.9425 -3.3200 35 1 2.6266 1.6342 -2.4536 36 1 4.8471 5.6327 -3.7430 37 1 4.7502 5.3752 -1.9842 38 1 6.1167 4.7062 -2.9079 39 1 5.6245 -0.2502 -0.2332 40 1 6.0037 1.1158 -1.3095 41 1 6.4085 0.7769 -3.6365 42 1 6.9462 -0.7957 -5.4514 43 1 7.0870 -5.8673 -8.0400 44 1 5.6416 -4.0512 -3.0045 45 1 5.1171 -2.4715 -1.1918 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265165565.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:18 Heat of formation + Delta-G solvation = -110.747754 kcal Electronic energy + Delta-G solvation = -27615.640693 eV Core-core repulsion = 23600.317965 eV Total energy + Delta-G solvation = -4015.322728 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.01190 -39.07845 -38.38563 -37.39105 -36.50721 -35.49267 -32.31648 -30.91421 -30.28229 -29.86097 -28.27332 -26.94465 -26.28618 -25.32510 -23.75783 -22.23255 -21.89131 -20.74452 -20.13911 -17.97378 -17.86902 -17.04866 -16.94809 -16.66608 -16.48845 -16.25252 -15.37494 -14.95579 -14.84653 -14.55705 -14.34960 -14.25857 -13.84019 -13.61618 -13.54225 -13.25936 -12.76776 -12.67647 -12.52403 -12.28510 -12.02126 -11.88397 -11.77883 -11.66571 -11.39397 -11.23508 -11.09667 -11.00677 -10.82267 -10.69046 -10.59048 -10.45017 -10.38920 -9.74561 -9.27671 -8.79452 -8.28921 -8.10658 -7.12823 -6.41376 -3.99840 1.99062 2.25874 2.34395 2.60077 3.15738 3.16969 3.21478 3.68955 3.86095 4.00478 4.63366 4.70674 4.81903 4.87929 4.92717 4.95836 5.01279 5.13306 5.17103 5.22298 5.27441 5.28895 5.31332 5.41702 5.49087 5.53442 5.59437 5.65903 5.77999 5.83792 5.94259 5.96180 6.26229 6.27418 6.47321 6.75277 6.81098 6.95106 6.99189 7.11030 7.14781 7.31148 7.48554 7.50229 7.57309 7.88323 8.04227 9.04670 9.75238 10.76787 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.013334 B = 0.003102 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.320558 B = 9025.652939 C =10419.511364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.371 6.371 3 C 0.064 3.936 4 C 0.035 3.965 5 N -0.489 5.489 6 C 0.055 3.945 7 C 0.430 3.570 8 O -0.509 6.509 9 O -0.361 6.361 10 C 0.034 3.966 11 C 0.096 3.904 12 C -0.179 4.179 13 C -0.072 4.072 14 C -0.193 4.193 15 C 0.156 3.844 16 O -0.179 6.179 17 C -0.390 4.390 18 H 0.092 0.908 19 C 0.039 3.961 20 N -0.864 5.864 21 Si 0.940 3.060 22 H -0.273 1.273 23 H -0.278 1.278 24 H -0.267 1.267 25 C -0.234 4.234 26 C -0.045 4.045 27 H 0.085 0.915 28 H 0.035 0.965 29 H 0.038 0.962 30 H 0.049 0.951 31 H 0.045 0.955 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.128 0.872 35 H 0.114 0.886 36 H 0.099 0.901 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.061 0.939 41 H 0.101 0.899 42 H 0.115 0.885 43 H 0.269 0.731 44 H 0.126 0.874 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.649 16.656 12.480 22.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.289 6.289 3 C -0.013 4.013 4 C -0.092 4.092 5 N -0.212 5.212 6 C -0.075 4.075 7 C 0.273 3.727 8 O -0.398 6.398 9 O -0.277 6.277 10 C -0.060 4.060 11 C -0.030 4.030 12 C -0.181 4.181 13 C -0.091 4.091 14 C -0.212 4.212 15 C 0.102 3.898 16 O -0.083 6.083 17 C -0.467 4.467 18 H 0.110 0.890 19 C -0.165 4.165 20 N -0.499 5.499 21 Si 0.765 3.235 22 H -0.199 1.199 23 H -0.203 1.203 24 H -0.192 1.192 25 C -0.253 4.253 26 C -0.063 4.063 27 H 0.104 0.896 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.105 0.895 33 H 0.093 0.907 34 H 0.146 0.854 35 H 0.132 0.868 36 H 0.117 0.883 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.079 0.921 41 H 0.119 0.881 42 H 0.133 0.867 43 H 0.079 0.921 44 H 0.144 0.856 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.398 16.040 12.265 22.272 hybrid contribution 0.084 0.247 0.295 0.394 sum -9.314 16.286 12.560 22.578 Atomic orbital electron populations 1.22730 0.81821 1.02737 0.99393 1.88059 1.18761 1.26908 1.95161 1.22627 0.93792 0.85384 0.99528 1.22509 0.93109 1.00495 0.93123 1.62557 1.19569 1.37641 1.01391 1.22362 1.00780 0.85250 0.99140 1.25916 0.80354 0.86616 0.79831 1.90577 1.37323 1.80600 1.31260 1.86592 1.65118 1.25509 1.50446 1.23232 0.96349 0.83834 1.02631 1.21126 0.86296 0.97626 0.97942 1.19107 1.09245 0.93826 0.95873 1.20438 0.98493 0.97442 0.92696 1.20137 1.10087 0.90700 1.00286 1.19384 0.91812 0.90212 0.88381 1.83974 1.69279 1.18131 1.36869 1.21335 1.43566 0.80958 1.00801 0.89035 1.25279 0.96698 1.00078 0.94471 1.70042 1.41265 1.35305 1.03305 0.85721 0.78614 0.80440 0.78721 1.19875 1.20325 1.19179 1.21175 1.09130 1.00460 0.94541 1.20573 0.95982 0.92267 0.97519 0.89649 0.94665 0.94306 0.93249 0.93680 0.89532 0.90742 0.85429 0.86846 0.88263 0.92192 0.91895 0.90605 0.92071 0.88070 0.86695 0.92084 0.85619 0.87377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.38 16 2 O -0.37 -4.50 10.65 -35.23 -0.38 -4.87 16 3 C 0.06 0.64 5.99 37.16 0.22 0.87 16 4 C 0.04 0.40 5.03 -3.82 -0.02 0.38 16 5 N -0.49 -6.49 4.61 -237.51 -1.09 -7.59 16 6 C 0.05 0.66 5.55 -4.98 -0.03 0.63 16 7 C 0.43 5.22 7.18 36.01 0.26 5.48 16 8 O -0.51 -6.96 11.46 -18.75 -0.21 -7.17 16 9 O -0.36 -4.02 10.57 -39.25 -0.41 -4.43 16 10 C 0.03 0.28 10.56 101.05 1.07 1.34 16 11 C 0.10 1.40 4.80 -4.97 -0.02 1.38 16 12 C -0.18 -3.12 4.91 -104.58 -0.51 -3.63 16 13 C -0.07 -1.30 8.41 -39.61 -0.33 -1.63 16 14 C -0.19 -4.10 9.99 -39.40 -0.39 -4.50 16 15 C 0.16 3.80 6.65 -39.10 -0.26 3.54 16 16 O -0.18 -5.16 9.76 0.04 0.00 -5.16 16 17 C -0.39 -11.01 9.49 30.89 0.29 -10.72 16 18 H 0.09 2.40 5.20 -52.49 -0.27 2.12 16 19 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 20 N -0.86 -25.52 13.67 55.48 0.76 -24.76 16 21 Si 0.94 20.72 29.55 -169.99 -5.02 15.70 16 22 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 23 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 24 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 25 C -0.23 -5.16 9.17 -39.39 -0.36 -5.52 16 26 C -0.04 -0.84 9.71 -39.61 -0.38 -1.23 16 27 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.42 6.32 -51.93 -0.33 0.09 16 32 H 0.09 0.99 7.86 -51.93 -0.41 0.58 16 33 H 0.07 0.87 5.41 -51.93 -0.28 0.59 16 34 H 0.13 1.68 6.47 -51.93 -0.34 1.34 16 35 H 0.11 1.14 6.33 -51.93 -0.33 0.82 16 36 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 38 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 39 H 0.08 1.07 7.79 -51.93 -0.40 0.66 16 40 H 0.06 0.93 5.32 -51.93 -0.28 0.65 16 41 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 42 H 0.11 2.37 8.06 -52.49 -0.42 1.95 16 43 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 44 H 0.13 2.79 5.64 -52.49 -0.30 2.50 16 45 H 0.11 1.84 8.06 -52.49 -0.42 1.41 16 LS Contribution 371.33 15.07 5.60 5.60 Total: -1.00 -32.63 371.33 -6.52 -39.15 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -6.29 Total: 4.78 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: 0.54 Total: -11.24 kcal Atomic # 7 Polarization: -32.01 SS G_CDS: -0.34 Total: -32.35 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -1.00 Total: -21.64 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.63 -6.52 -39.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265165565.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.601 kcal (2) G-P(sol) polarization free energy of solvation -32.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds