Wall clock time and date at job start Tue Mar 31 2020 14:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42895 * 113.99825 * 2 1 4 4 C 1.53003 * 109.47078 * 179.97438 * 3 2 1 5 5 N 1.46901 * 109.46959 * 64.99702 * 4 3 2 6 6 C 1.46900 * 110.99946 * 66.04875 * 5 4 3 7 7 C 1.50700 * 109.47191 * 60.95104 * 6 5 4 8 8 O 1.20829 * 119.99910 * 2.16346 * 7 6 5 9 9 O 1.34228 * 119.99907 * 182.16740 * 7 6 5 10 10 C 1.45197 * 116.99786 * 179.97438 * 9 7 6 11 11 C 1.46906 * 111.00025 * 190.00286 * 5 4 3 12 12 C 1.50701 * 109.46916 * 164.10972 * 11 5 4 13 13 C 1.38304 * 119.92843 * 95.45248 * 12 11 5 14 14 C 1.38094 * 120.07074 * 179.97438 * 13 12 11 15 15 C 1.38880 * 119.92970 * 0.02562 * 14 13 12 16 16 O 1.35753 * 120.07111 * 180.02562 * 15 14 13 17 17 C 1.34829 * 117.00163 * 185.70070 * 16 15 14 18 18 H 1.08002 * 119.99621 * 354.89591 * 17 16 15 19 19 C 1.38653 * 119.99879 * 174.89567 * 17 16 15 20 20 N 1.31553 * 119.99995 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99953 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47199 * 89.99784 * 21 19 17 23 23 H 1.48501 * 109.47116 * 210.00276 * 21 19 17 24 24 H 1.48502 * 109.46855 * 330.00307 * 21 19 17 25 25 C 1.38886 * 119.86171 * 0.27375 * 15 14 13 26 26 C 1.38095 * 119.92618 * 359.44745 * 25 15 14 27 27 H 1.08996 * 109.47151 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46728 * 300.00522 * 1 2 3 29 29 H 1.08999 * 109.46974 * 59.99879 * 1 2 3 30 30 H 1.08998 * 109.47764 * 60.00138 * 3 2 1 31 31 H 1.09003 * 109.47245 * 299.99343 * 3 2 1 32 32 H 1.09000 * 109.47240 * 305.00032 * 4 3 2 33 33 H 1.08999 * 109.47113 * 184.99651 * 4 3 2 34 34 H 1.09003 * 109.46898 * 180.94701 * 6 5 4 35 35 H 1.08996 * 109.47172 * 300.94460 * 6 5 4 36 36 H 1.09006 * 109.47233 * 179.97438 * 10 9 7 37 37 H 1.09003 * 109.47208 * 299.99334 * 10 9 7 38 38 H 1.08996 * 109.47415 * 59.99735 * 10 9 7 39 39 H 1.09000 * 109.47039 * 44.11153 * 11 5 4 40 40 H 1.08998 * 109.46756 * 284.11367 * 11 5 4 41 41 H 1.08000 * 119.96552 * 359.97438 * 13 12 11 42 42 H 1.08001 * 120.03553 * 180.02562 * 14 13 12 43 43 H 0.97005 * 119.99727 * 179.97438 * 20 19 17 44 44 H 1.07995 * 120.03361 * 179.72671 * 25 15 14 45 45 H 1.07997 * 119.96507 * 180.27086 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9779 0.5622 -1.2543 6 6 3.6969 1.4346 -2.4023 7 6 4.4432 2.7338 -2.2404 8 8 5.1685 2.8994 -1.2883 9 8 4.3021 3.7071 -3.1539 10 6 5.0506 4.9316 -2.9334 11 6 5.4037 0.2132 -1.1948 12 6 5.7311 -0.7523 -2.3046 13 6 6.2438 -0.2817 -3.4998 14 6 6.5454 -1.1638 -4.5185 15 6 6.3329 -2.5249 -4.3421 16 8 6.6289 -3.3947 -5.3415 17 6 6.2894 -4.6854 -5.1502 18 1 5.8802 -5.0013 -4.2019 19 6 6.4655 -5.6072 -6.1708 20 7 6.9635 -5.2223 -7.3260 21 14 5.9958 -7.3957 -5.9055 22 1 4.5794 -7.5995 -6.3020 23 1 6.8713 -8.2652 -6.7318 24 1 6.1634 -7.7439 -4.4717 25 6 5.8121 -2.9938 -3.1430 26 6 5.5180 -2.1071 -2.1261 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.6887 1.8464 0.8899 31 1 1.6887 1.8463 -0.8901 32 1 3.8509 0.5685 0.8427 33 1 3.9785 2.1765 0.0901 34 1 4.0191 0.9425 -3.3200 35 1 2.6266 1.6342 -2.4536 36 1 4.8471 5.6327 -3.7430 37 1 4.7502 5.3752 -1.9842 38 1 6.1167 4.7062 -2.9079 39 1 5.6245 -0.2502 -0.2332 40 1 6.0037 1.1158 -1.3095 41 1 6.4085 0.7769 -3.6365 42 1 6.9462 -0.7957 -5.4514 43 1 7.0870 -5.8673 -8.0400 44 1 5.6416 -4.0512 -3.0045 45 1 5.1171 -2.4715 -1.1918 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265165565.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:17 Heat of formation + Delta-G solvation = -132.885046 kcal Electronic energy + Delta-G solvation = -27616.600638 eV Core-core repulsion = 23600.317965 eV Total energy + Delta-G solvation = -4016.282673 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.97227 -40.74365 -39.41345 -38.50672 -37.81983 -36.61009 -34.30139 -32.22117 -31.81392 -30.94910 -29.33141 -27.92477 -27.34923 -26.90819 -25.01507 -23.58823 -23.09576 -22.11101 -21.29883 -19.83709 -18.91824 -18.69207 -17.89254 -17.62163 -17.39336 -17.09212 -16.53918 -16.38256 -16.08749 -15.86704 -15.68377 -15.46639 -15.43465 -15.03373 -14.66871 -14.52231 -14.34330 -14.04747 -13.57979 -13.52530 -13.04980 -12.97101 -12.90946 -12.85903 -12.62566 -12.49961 -12.37810 -12.25437 -12.10845 -12.05803 -11.96538 -11.69160 -11.64037 -11.14267 -10.77007 -10.49140 -9.75439 -9.33145 -8.88276 -8.44970 -6.12759 0.61005 0.69238 1.06163 1.36846 1.45964 1.54128 1.77434 2.19853 2.66682 2.93997 3.02189 3.26884 3.53018 3.81100 3.92780 3.98425 4.09393 4.19598 4.20892 4.27578 4.28582 4.33283 4.42588 4.49662 4.58252 4.60028 4.62177 4.64980 4.69354 4.74490 4.80177 4.83963 4.92828 4.95560 5.09426 5.17895 5.31397 5.39470 5.56989 5.72380 5.77233 5.94712 5.95799 6.05516 6.23777 6.39545 6.66671 7.00057 7.80830 8.78297 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.013334 B = 0.003102 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.320558 B = 9025.652939 C =10419.511364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.401 6.401 3 C 0.064 3.936 4 C 0.039 3.961 5 N -0.499 5.499 6 C 0.054 3.946 7 C 0.435 3.565 8 O -0.525 6.525 9 O -0.367 6.367 10 C 0.027 3.973 11 C 0.102 3.898 12 C -0.152 4.152 13 C -0.061 4.061 14 C -0.200 4.200 15 C 0.117 3.883 16 O -0.232 6.232 17 C -0.413 4.413 18 H 0.101 0.899 19 C -0.022 4.022 20 N -0.921 5.921 21 Si 1.017 2.983 22 H -0.263 1.263 23 H -0.271 1.271 24 H -0.253 1.253 25 C -0.240 4.240 26 C -0.044 4.044 27 H 0.086 0.914 28 H 0.051 0.949 29 H 0.046 0.954 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.116 0.884 35 H 0.134 0.866 36 H 0.126 0.874 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.087 0.913 40 H 0.062 0.938 41 H 0.130 0.870 42 H 0.113 0.887 43 H 0.272 0.728 44 H 0.118 0.882 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.234 18.111 14.787 25.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.320 6.320 3 C -0.012 4.012 4 C -0.088 4.088 5 N -0.222 5.222 6 C -0.076 4.076 7 C 0.279 3.721 8 O -0.416 6.416 9 O -0.282 6.282 10 C -0.066 4.066 11 C -0.024 4.024 12 C -0.153 4.153 13 C -0.080 4.080 14 C -0.220 4.220 15 C 0.067 3.933 16 O -0.139 6.139 17 C -0.489 4.489 18 H 0.118 0.882 19 C -0.220 4.220 20 N -0.559 5.559 21 Si 0.837 3.163 22 H -0.188 1.188 23 H -0.196 1.196 24 H -0.177 1.177 25 C -0.259 4.259 26 C -0.062 4.062 27 H 0.105 0.895 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.104 0.896 33 H 0.093 0.907 34 H 0.134 0.866 35 H 0.152 0.848 36 H 0.144 0.856 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.105 0.895 40 H 0.080 0.920 41 H 0.148 0.852 42 H 0.131 0.869 43 H 0.081 0.919 44 H 0.136 0.864 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -11.004 17.553 14.613 25.352 hybrid contribution 0.506 0.161 -0.223 0.576 sum -10.498 17.714 14.390 25.121 Atomic orbital electron populations 1.22863 0.80362 1.03284 1.00554 1.88002 1.20500 1.28096 1.95425 1.22674 0.92654 0.85010 1.00903 1.22512 0.94182 1.00186 0.91919 1.62474 1.18129 1.38900 1.02684 1.22360 1.02065 0.85122 0.98035 1.25771 0.79896 0.86823 0.79646 1.90572 1.38044 1.81011 1.31946 1.86573 1.65404 1.26223 1.50009 1.23501 0.95806 0.83073 1.04213 1.21043 0.87638 0.96797 0.96949 1.19530 1.05693 0.93943 0.96109 1.20703 0.97073 0.98324 0.91858 1.20358 1.10144 0.90117 1.01338 1.19888 0.93718 0.90970 0.88769 1.83939 1.72049 1.18810 1.39081 1.21818 1.43993 0.81474 1.01578 0.88161 1.26566 0.96393 1.05121 0.93896 1.70185 1.43896 1.37220 1.04637 0.84603 0.78592 0.73801 0.79332 1.18790 1.19595 1.17693 1.21249 1.09212 1.00751 0.94691 1.20841 0.95358 0.92461 0.97566 0.89533 0.93056 0.93549 0.91281 0.92838 0.89639 0.90714 0.86639 0.84839 0.85568 0.91583 0.92383 0.89478 0.91974 0.85180 0.86914 0.91872 0.86431 0.84808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.64 16 2 O -0.40 -8.72 10.65 -148.98 -1.59 -10.31 16 3 C 0.06 1.10 5.99 71.98 0.43 1.53 16 4 C 0.04 0.78 5.03 86.30 0.43 1.21 16 5 N -0.50 -11.85 4.61 -905.35 -4.17 -16.02 16 6 C 0.05 1.16 5.55 85.56 0.47 1.63 16 7 C 0.44 9.42 7.18 71.24 0.51 9.94 16 8 O -0.53 -12.99 11.46 21.95 0.25 -12.74 16 9 O -0.37 -7.22 10.57 -51.40 -0.54 -7.76 16 10 C 0.03 0.38 10.56 113.37 1.20 1.58 16 11 C 0.10 2.69 4.80 85.56 0.41 3.10 16 12 C -0.15 -4.94 4.91 -19.83 -0.10 -5.04 16 13 C -0.06 -2.11 8.41 22.25 0.19 -1.92 16 14 C -0.20 -8.66 9.99 22.39 0.22 -8.44 16 15 C 0.12 5.92 6.65 22.58 0.15 6.07 16 16 O -0.23 -14.17 9.76 -22.76 -0.22 -14.39 16 17 C -0.41 -24.36 9.49 67.92 0.64 -23.72 16 18 H 0.10 5.46 5.20 -2.91 -0.02 5.45 16 19 C -0.02 -1.29 5.49 84.83 0.47 -0.82 16 20 N -0.92 -57.06 13.67 21.61 0.30 -56.77 16 21 Si 1.02 43.41 29.55 68.60 2.03 45.44 16 22 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 23 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 24 H -0.25 -10.06 7.11 99.48 0.71 -9.36 16 25 C -0.24 -10.72 9.17 22.39 0.21 -10.51 16 26 C -0.04 -1.59 9.71 22.25 0.22 -1.37 16 27 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.05 0.81 6.32 -2.39 -0.02 0.80 16 32 H 0.09 1.72 7.86 -2.39 -0.02 1.70 16 33 H 0.08 1.52 5.41 -2.39 -0.01 1.51 16 34 H 0.12 2.78 6.47 -2.39 -0.02 2.77 16 35 H 0.13 2.31 6.33 -2.39 -0.02 2.29 16 36 H 0.13 1.05 8.14 -2.38 -0.02 1.03 16 37 H 0.07 0.85 8.13 -2.39 -0.02 0.83 16 38 H 0.06 0.88 8.13 -2.39 -0.02 0.86 16 39 H 0.09 2.15 7.79 -2.39 -0.02 2.13 16 40 H 0.06 1.69 5.32 -2.39 -0.01 1.67 16 41 H 0.13 3.78 8.06 -2.91 -0.02 3.75 16 42 H 0.11 4.82 8.06 -2.91 -0.02 4.80 16 43 H 0.27 15.43 8.31 -92.70 -0.77 14.66 16 44 H 0.12 5.36 5.64 -2.91 -0.02 5.35 16 45 H 0.13 4.18 8.06 -2.91 -0.02 4.16 16 Total: -1.00 -74.11 371.33 3.76 -70.35 By element: Atomic # 1 Polarization: 26.32 SS G_CDS: 1.00 Total: 27.33 kcal Atomic # 6 Polarization: -31.83 SS G_CDS: 6.70 Total: -25.13 kcal Atomic # 7 Polarization: -68.91 SS G_CDS: -3.87 Total: -72.79 kcal Atomic # 8 Polarization: -43.09 SS G_CDS: -2.10 Total: -45.19 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -74.11 3.76 -70.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265165565.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.534 kcal (2) G-P(sol) polarization free energy of solvation -74.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds