Wall clock time and date at job start Tue Mar 31 2020 13:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46495 * 109.46937 * 2 1 4 4 C 1.46505 * 119.99978 * 80.76471 * 3 2 1 5 5 C 1.50698 * 109.47325 * 270.00050 * 4 3 2 6 6 H 1.08006 * 119.99772 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99972 * 180.02562 * 5 4 3 8 8 N 1.31508 * 120.00113 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99825 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47194 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47043 * 119.99817 * 9 7 5 12 12 H 1.48497 * 109.47083 * 240.00060 * 9 7 5 13 13 C 1.34780 * 120.00119 * 260.77023 * 3 2 1 14 14 O 1.21277 * 120.00178 * 174.36339 * 13 3 2 15 15 C 1.50701 * 120.00065 * 354.35922 * 13 3 2 16 16 C 1.50697 * 112.84695 * 80.07272 * 15 13 3 17 17 C 1.38227 * 119.98877 * 6.48016 * 16 15 13 18 18 C 1.38191 * 120.04923 * 179.97438 * 17 16 15 19 19 C 1.38496 * 120.02519 * 359.97438 * 18 17 16 20 20 F 1.35096 * 120.01186 * 179.97438 * 19 18 17 21 21 C 1.38393 * 119.97519 * 359.97438 * 19 18 17 22 22 C 1.38439 * 119.95122 * 359.77200 * 21 19 18 23 23 F 1.35099 * 120.01927 * 180.22763 * 22 21 19 24 24 C 1.53783 * 113.61200 * 308.77285 * 15 13 3 25 25 C 1.53785 * 87.08105 * 270.88123 * 24 15 13 26 26 C 1.53777 * 113.61403 * 211.27436 * 15 13 3 27 27 H 1.08996 * 109.47110 * 69.05580 * 1 2 3 28 28 H 1.09001 * 109.47015 * 189.05295 * 1 2 3 29 29 H 1.08994 * 109.47385 * 309.05072 * 1 2 3 30 30 H 1.08999 * 109.47073 * 240.00170 * 2 1 3 31 31 H 1.09002 * 109.47050 * 119.99981 * 2 1 3 32 32 H 1.09001 * 109.46995 * 150.00057 * 4 3 2 33 33 H 1.08994 * 109.47133 * 30.00524 * 4 3 2 34 34 H 0.96998 * 120.00026 * 180.02562 * 8 7 5 35 35 H 1.07996 * 119.97677 * 359.97438 * 17 16 15 36 36 H 1.08002 * 119.98480 * 179.97438 * 18 17 16 37 37 H 1.07996 * 120.02638 * 180.02562 * 21 19 18 38 38 H 1.08998 * 113.61831 * 25.42970 * 24 15 13 39 39 H 1.09000 * 113.61241 * 156.33309 * 24 15 13 40 40 H 1.08999 * 113.61485 * 220.02409 * 25 24 15 41 41 H 1.09000 * 113.61421 * 89.11426 * 25 24 15 42 42 H 1.09004 * 113.60712 * 203.66389 * 26 15 13 43 43 H 1.08997 * 113.61914 * 334.56587 * 26 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0705 2.1397 1.2523 5 6 0.7662 2.8672 1.4538 6 1 -0.0226 2.7742 0.7218 7 6 0.5802 3.6523 2.5718 8 7 1.5409 3.7659 3.4627 9 14 -1.0368 4.5535 2.8218 10 1 -1.9467 4.2622 1.6850 11 1 -1.6655 4.1001 4.0884 12 1 -0.7834 6.0151 2.8904 13 6 2.4194 1.9542 -1.1521 14 8 2.7266 3.1273 -1.1712 15 6 2.4864 1.1371 -2.4166 16 6 1.1408 0.9619 -3.0720 17 6 0.0392 1.6359 -2.5790 18 6 -1.1953 1.4765 -3.1793 19 6 -1.3299 0.6416 -4.2761 20 9 -2.5370 0.4857 -4.8625 21 6 -0.2275 -0.0328 -4.7712 22 6 1.0097 0.1317 -4.1723 23 9 2.0877 -0.5224 -4.6573 24 6 3.2735 -0.1748 -2.2614 25 6 4.5291 0.6245 -2.6482 26 6 3.5895 1.5925 -3.3865 27 1 -0.3633 0.3673 -0.9597 28 1 -0.3633 -1.0149 0.1617 29 1 -0.3634 0.6474 0.7980 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.8858 2.8616 1.2061 33 1 2.2374 1.4559 2.0845 34 1 1.4099 4.3179 4.2495 35 1 0.1433 2.2874 -1.7240 36 1 -2.0554 2.0033 -2.7930 37 1 -0.3315 -0.6837 -5.6267 38 1 3.2945 -0.5532 -1.2394 39 1 2.9995 -0.9373 -2.9905 40 1 5.2052 0.0826 -3.3095 41 1 5.0391 1.0754 -1.7969 42 1 3.4017 1.3131 -4.4233 43 1 3.8655 2.6408 -3.2729 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271946985.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:26 Heat of formation + Delta-G solvation = -75.414004 kcal Electronic energy + Delta-G solvation = -29135.887468 eV Core-core repulsion = 25011.009411 eV Total energy + Delta-G solvation = -4124.878057 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.144 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.18243 -50.03814 -42.24395 -39.59102 -38.39189 -37.07781 -34.80166 -32.43758 -31.69686 -31.41205 -29.58539 -27.02278 -26.89225 -25.23173 -24.39692 -23.83682 -23.09565 -21.49714 -19.69359 -19.22295 -18.67830 -18.09472 -17.86787 -17.36193 -17.12729 -16.87757 -16.68156 -16.48906 -16.39689 -15.87868 -15.53899 -15.25286 -14.99431 -14.76166 -14.41147 -14.22028 -14.08416 -13.91616 -13.66870 -13.42469 -13.28030 -13.23922 -12.95119 -12.81210 -12.71283 -12.55707 -12.48213 -12.06927 -11.88575 -11.71257 -11.61999 -11.47262 -11.22521 -10.62662 -10.45850 -10.05211 -9.65230 -9.46529 -8.20914 -6.32696 -0.18410 -0.07104 1.34985 1.37369 1.47946 1.69000 2.20411 2.23379 2.40905 2.76183 3.09348 3.25313 3.36752 3.42477 3.48857 3.59790 3.65911 3.82834 3.89023 4.12442 4.19566 4.31064 4.45889 4.58942 4.68315 4.71502 4.72630 4.78282 4.86842 4.91265 4.94201 4.95561 5.01898 5.04989 5.05513 5.07496 5.22274 5.24898 5.40300 5.52832 5.61824 5.67246 5.84769 6.08058 6.70586 6.77873 7.28503 7.44363 8.86868 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.012737 B = 0.005334 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.807076 B = 5247.937726 C = 6659.523577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.083 3.917 3 N -0.591 5.591 4 C 0.262 3.738 5 C -0.525 4.525 6 H 0.058 0.942 7 C 0.007 3.993 8 N -0.930 5.930 9 Si 0.959 3.041 10 H -0.264 1.264 11 H -0.272 1.272 12 H -0.285 1.285 13 C 0.530 3.470 14 O -0.588 6.588 15 C -0.069 4.069 16 C -0.106 4.106 17 C -0.061 4.061 18 C -0.157 4.157 19 C 0.128 3.872 20 F -0.131 7.131 21 C -0.174 4.174 22 C 0.144 3.856 23 F -0.116 7.116 24 C -0.137 4.137 25 C -0.132 4.132 26 C -0.116 4.116 27 H 0.060 0.940 28 H 0.083 0.917 29 H 0.047 0.953 30 H 0.117 0.883 31 H 0.075 0.925 32 H -0.004 1.004 33 H 0.023 0.977 34 H 0.265 0.735 35 H 0.113 0.887 36 H 0.150 0.850 37 H 0.179 0.821 38 H 0.089 0.911 39 H 0.128 0.872 40 H 0.104 0.896 41 H 0.061 0.939 42 H 0.112 0.888 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.069 -13.855 -17.185 22.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.038 4.038 3 N -0.321 5.321 4 C 0.140 3.860 5 C -0.563 4.563 6 H 0.076 0.924 7 C -0.191 4.191 8 N -0.570 5.570 9 Si 0.784 3.216 10 H -0.188 1.188 11 H -0.197 1.197 12 H -0.211 1.211 13 C 0.318 3.682 14 O -0.468 6.468 15 C -0.072 4.072 16 C -0.108 4.108 17 C -0.080 4.080 18 C -0.176 4.176 19 C 0.109 3.891 20 F -0.110 7.110 21 C -0.194 4.194 22 C 0.124 3.876 23 F -0.094 7.094 24 C -0.174 4.174 25 C -0.169 4.169 26 C -0.153 4.153 27 H 0.079 0.921 28 H 0.102 0.898 29 H 0.066 0.934 30 H 0.135 0.865 31 H 0.094 0.906 32 H 0.014 0.986 33 H 0.041 0.959 34 H 0.074 0.926 35 H 0.131 0.869 36 H 0.168 0.832 37 H 0.196 0.804 38 H 0.107 0.893 39 H 0.146 0.854 40 H 0.123 0.877 41 H 0.080 0.920 42 H 0.130 0.870 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.872 -13.222 -17.029 21.640 hybrid contribution -0.740 1.182 0.893 1.656 sum -2.612 -12.040 -16.136 20.301 Atomic orbital electron populations 1.22408 0.95765 1.02762 1.02587 1.22254 0.95523 0.81630 1.04415 1.48162 1.61448 1.14745 1.07748 1.18771 0.95982 0.90520 0.80677 1.21672 1.00321 1.28329 1.05997 0.92364 1.25786 1.00288 0.97288 0.95758 1.70049 1.34334 1.40767 1.11871 0.85493 0.79618 0.78072 0.78446 1.18848 1.19736 1.21116 1.20140 0.76496 0.86773 0.84804 1.90646 1.51809 1.18436 1.85959 1.20865 0.93027 0.99693 0.93627 1.19431 0.94676 0.99698 0.96967 1.20744 0.91790 0.97074 0.98357 1.21258 0.98969 1.00842 0.96535 1.17220 0.80759 0.97916 0.93218 1.91533 1.42190 1.94266 1.82977 1.21134 0.89750 1.04322 1.04154 1.16748 0.83680 0.93958 0.93183 1.91455 1.52692 1.78618 1.86635 1.23663 0.94561 0.94691 1.04436 1.22760 0.96575 0.97319 1.00234 1.22974 0.93566 1.00269 0.98508 0.92089 0.89814 0.93387 0.86549 0.90637 0.98616 0.95917 0.92616 0.86878 0.83223 0.80362 0.89259 0.85371 0.87731 0.92029 0.87018 0.92370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.40 9.98 71.98 0.72 -4.68 16 2 C 0.08 2.61 5.10 86.38 0.44 3.05 16 3 N -0.59 -24.65 2.48 -826.15 -2.05 -26.70 16 4 C 0.26 13.88 5.13 85.63 0.44 14.32 16 5 C -0.52 -29.38 8.19 25.60 0.21 -29.17 16 6 H 0.06 3.21 7.25 -2.91 -0.02 3.18 16 7 C 0.01 0.42 5.46 84.66 0.46 0.88 16 8 N -0.93 -55.97 13.29 21.45 0.28 -55.68 16 9 Si 0.96 44.67 29.54 68.60 2.03 46.69 16 10 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 11 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 12 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 13 C 0.53 21.97 4.46 87.66 0.39 22.36 16 14 O -0.59 -30.63 15.83 -3.02 -0.05 -30.67 16 15 C -0.07 -2.05 0.62 -53.15 -0.03 -2.08 16 16 C -0.11 -2.83 4.72 -19.82 -0.09 -2.92 16 17 C -0.06 -1.82 6.11 22.26 0.14 -1.68 16 18 C -0.16 -3.83 9.85 22.32 0.22 -3.61 16 19 C 0.13 2.67 7.30 22.37 0.16 2.83 16 20 F -0.13 -2.72 17.27 44.97 0.78 -1.94 16 21 C -0.17 -3.09 10.01 22.35 0.22 -2.87 16 22 C 0.14 2.96 6.68 22.37 0.15 3.11 16 23 F -0.12 -2.08 12.89 44.97 0.58 -1.50 16 24 C -0.14 -3.09 5.41 31.12 0.17 -2.92 16 25 C -0.13 -3.08 7.80 31.12 0.24 -2.83 16 26 C -0.12 -3.12 6.84 31.12 0.21 -2.91 16 27 H 0.06 1.79 4.25 -2.39 -0.01 1.78 16 28 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.05 1.81 6.40 -2.39 -0.02 1.79 16 30 H 0.12 2.92 3.51 -2.39 -0.01 2.91 16 31 H 0.08 2.26 8.03 -2.39 -0.02 2.24 16 32 H 0.00 -0.26 7.51 -2.39 -0.02 -0.28 16 33 H 0.02 1.23 7.99 -2.39 -0.02 1.21 16 34 H 0.26 15.01 8.31 -92.71 -0.77 14.23 16 35 H 0.11 4.30 6.64 -2.91 -0.02 4.28 16 36 H 0.15 3.36 8.06 -2.91 -0.02 3.33 16 37 H 0.18 2.09 8.06 -2.91 -0.02 2.07 16 38 H 0.09 2.04 5.52 -2.39 -0.01 2.03 16 39 H 0.13 2.26 5.52 -2.39 -0.01 2.25 16 40 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.11 2.45 6.61 -2.39 -0.02 2.44 16 43 H 0.06 1.90 7.46 -2.39 -0.02 1.88 16 Total: -1.00 -69.93 341.78 6.68 -63.26 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: 1.05 Total: 15.68 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: 4.05 Total: -9.13 kcal Atomic # 7 Polarization: -80.62 SS G_CDS: -1.76 Total: -82.38 kcal Atomic # 8 Polarization: -30.63 SS G_CDS: -0.05 Total: -30.67 kcal Atomic # 9 Polarization: -4.80 SS G_CDS: 1.36 Total: -3.44 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Total: -69.93 6.68 -63.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271946985.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.159 kcal (2) G-P(sol) polarization free energy of solvation -69.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds